Clinical-Genomics/cg_lims issues and pull requests

#297 - ADD UDF for nuclease -free water lot number in library validation QC step for WGS

Issue - State: open - Opened by MarcelaGa over 2 years ago - 10 comments
Labels: Effort: Small, Urgency: Medium, Gain: Medium, Arnold

#296 - Mirco WF, adds purification instrument to Arnold

Pull Request - State: closed - Opened by RasmusBurge-CG over 2 years ago

#294 - Add pool name to sample

Pull Request - State: closed - Opened by RasmusBurge-CG over 2 years ago

#293 - Volume calculation of requeued TWIST-samples (in pooling for hyb)

Issue - State: closed - Opened by RasmusBurge-CG over 2 years ago - 4 comments
Labels: Effort: Medium, Urgency: Small, Gain: Small

#292 - Script to copy location

Pull Request - State: open - Opened by RasmusBurge-CG over 2 years ago - 1 comment

#289 - Add pool name to KAPA debug

Pull Request - State: closed - Opened by RasmusBurge-CG over 2 years ago

#288 - KingFisher Flex ready be trended in Arnold

Issue - State: closed - Opened by FayKanellidou over 2 years ago - 5 comments
Labels: Effort: Small, Urgency: Medium, Gain: Large, Arnold

#285 - Couldn't use -su in the make_96well_placement_map.py

Issue - State: closed - Opened by RasmusBurge-CG almost 3 years ago - 1 comment
Labels: Effort: Small, bug, help wanted, question, Urgency: Small

#282 - lägga till novva seq run i arnold

Issue - State: closed - Opened by cesve almost 3 years ago

#277 - Make a script that can be used to change a UDF in an already finished step.

Issue - State: closed - Opened by RasmusBurge-CG almost 3 years ago - 2 comments
Labels: Effort: Small, Urgency: Medium, Gain: Medium

#265 - Make a EPP that is able to change reception date

Issue - State: closed - Opened by RasmusBurge-CG almost 3 years ago - 3 comments
Labels: Effort: Large, Urgency: Small, Gain: Medium, More info needed

#259 - Use the actual file names when uploading documents to lims

Issue - State: open - Opened by EmiliaRegazzoni almost 3 years ago - 2 comments
Labels: Urgency: Small

#256 - Remove samples from NovaSeq run

Issue - State: closed - Opened by karlnyr almost 3 years ago - 2 comments
Labels: enhancement

#252 - update arnold models with atlas methods

Issue - State: closed - Opened by mayabrandi almost 3 years ago - 1 comment

#244 - Add source well in Sample table in Quantit step

Issue - State: open - Opened by cesve almost 3 years ago - 2 comments
Labels: Effort: Medium, help wanted, Urgency: Small

#242 - Move aggregate qc and copy fields maya sugestions

Pull Request - State: closed - Opened by mayabrandi almost 3 years ago

#228 - ticket id + step type description to arnold

Issue - State: closed - Opened by mayabrandi almost 3 years ago - 2 comments

#223 - Move Aggregate QC and Copy Fields EPP

Pull Request - State: closed - Opened by Karl-Svard almost 3 years ago

#220 - Add Hamilton norm and pooling script to relevant steps in LIMS

Issue - State: closed - Opened by RasmusBurge-CG almost 3 years ago - 2 comments
Labels: Effort: Medium, Urgency: Medium, Gain: Large

#212 - Transfer make_twist_pooling_map.py

Issue - State: closed - Opened by mayabrandi almost 3 years ago - 1 comment

#211 - Transfer make_csv.py

Issue - State: open - Opened by mayabrandi almost 3 years ago

#195 - Transfer file2udf_quantit_qc.py

Issue - State: closed - Opened by mayabrandi almost 3 years ago

#188 - Transfer reads_aggregation.py

Issue - State: open - Opened by mayabrandi almost 3 years ago - 1 comment

#186 - Transfer qPCR_dilution.py

Issue - State: closed - Opened by mayabrandi almost 3 years ago - 9 comments
Labels: Effort: Medium, Urgency: Large, Gain: Large

#177 - Qc option

Pull Request - State: closed - Opened by mayabrandi almost 3 years ago

#171 - API based integration service for NovaSeq.

Issue - State: open - Opened by mayabrandi almost 3 years ago - 2 comments
Labels: Effort: Large, Urgency: Medium, Gain: Large

#168 - Change definition of Concentration (nM ) in CG002 - Normalization of microbial samples for sequencing

Issue - State: closed - Opened by mayabrandi almost 3 years ago
Labels: Effort: Medium, Urgency: Small, Gain: Large

#158 - New validation and normalization protocols for the SARS-CoV-2 wf

Issue - State: closed - Opened by cesve almost 3 years ago - 4 comments
Labels: Effort: Large, Urgency: Small, Gain: Medium

#157 - New version of TWIST wf

Issue - State: closed - Opened by cesve almost 3 years ago - 13 comments

#146 - archive 96well_placement_map

Issue - State: open - Opened by mayabrandi about 3 years ago - 1 comment
Labels: bug

#141 - ignore control samples for rerun

Issue - State: closed - Opened by mayabrandi about 3 years ago - 2 comments
Labels: More info needed

#128 - aggreagte reads gives error - transfere fom clinical_EPPs to cg_lims

Issue - State: closed - Opened by mayabrandi about 3 years ago - 1 comment
Labels: More info needed

#110 - Update calculate_water_volume_rna.py

Pull Request - State: closed - Opened by mayabrandi over 3 years ago

#107 - if you want to use pydantic

Pull Request - State: closed - Opened by mayabrandi over 3 years ago - 1 comment

#100 - fixing Wrong types

Pull Request - State: closed - Opened by mayabrandi over 3 years ago

#92 - Add a Planning for hyb step in TWIST wf

Issue - State: closed - Opened by cesve over 3 years ago - 5 comments
Labels: Effort: Large, Urgency: Medium, Gain: Large

#88 - Transfer check_indexes_in_pools.py

Issue - State: closed - Opened by barrystokman over 3 years ago - 3 comments
Labels: Effort: Small, Urgency: Large

#74 - Amount concentration

Pull Request - State: closed - Opened by mayabrandi over 3 years ago

#68 - Amount concentration

Pull Request - State: closed - Opened by mayabrandi over 3 years ago

#61 - Debug TGA script - add column

Issue - State: closed - Opened by annaengstrom over 3 years ago - 7 comments
Labels: Urgency: Medium

#59 - TWIST / TGA, colorize the pooling map based on source container

Issue - State: closed - Opened by RasmusBurge-CG over 3 years ago - 6 comments
Labels: Effort: Medium, Urgency: Small, Gain: Small

#38 - Decouple lims from vogue

Issue - State: closed - Opened by mayabrandi about 4 years ago

GitHub / Clinical-Genomics/cg_lims issues and pull requests