ClarityNLP/ClarityNLP issues and pull requests

#100 - Security Question

Issue - State: closed - Opened by aus10powell almost 6 years ago - 1 comment

#99 - Integrate performance optimizations from ClarityNLPOptimized into ClarityNLP main branch

Issue - State: closed - Opened by charhart almost 6 years ago - 1 comment
Labels: performance

#98 - Store pre-computed segmentation on Ingest

Issue - State: open - Opened by charhart almost 6 years ago
Labels: year1, algorithms, solr

#97 - NLPQL Editor: make the appearance of the "final" keyword optional

Issue - State: closed - Opened by richardboyd almost 6 years ago - 1 comment

#96 - Modify Result Viewer for Mongo evaluator

Issue - State: open - Opened by charhart almost 6 years ago
Labels: year1, ui

#95 - Add source as NLPQL keyword

Issue - State: open - Opened by jduke99 almost 6 years ago
Labels: year1, nlpql

#94 - Add support for SETDIFF to the NLPQL parser

Issue - State: closed - Opened by richardboyd almost 6 years ago - 1 comment
Labels: year1, nlpql

#93 - NLPQL statements don't always parse the same

Issue - State: closed - Opened by charhart about 6 years ago - 2 comments
Labels: year1, nlpql

#92 - Create documentset based on JOIN of document tags

Issue - State: open - Opened by jduke99 about 6 years ago
Labels: year1, nlpql

#91 - Modify ValueExtractor to look either before or after the search terms.

Issue - State: open - Opened by richardboyd about 6 years ago
Labels: year1, algorithms

#90 - Add API documentation for Ecog task

Issue - State: closed - Opened by charhart about 6 years ago
Labels: documentation, year1

#89 - Reorganization of Tasks

Pull Request - State: closed - Opened by charhart about 6 years ago

#88 - add source as argument to createDocumentSet

Pull Request - State: closed - Opened by charhart about 6 years ago

#87 - Feature/result feedback

Pull Request - State: closed - Opened by cjamadagni about 6 years ago

#86 - #85

Pull Request - State: closed - Opened by charhart about 6 years ago

#85 - Root out instances of the "mutable default argument" problem

Issue - State: closed - Opened by richardboyd about 6 years ago - 3 comments

#84 - Improvements on Negex

Issue - State: open - Opened by charhart about 6 years ago - 1 comment
Labels: year1, algorithms

#83 - add filtering by clarity jobs

Pull Request - State: closed - Opened by charhart about 6 years ago

#82 - API to write result feedback to Mongo

Pull Request - State: closed - Opened by cjamadagni about 6 years ago

#81 - ngrams do not show up on subject view on results viewer

Issue - State: closed - Opened by charhart about 6 years ago
Labels: year1, ui, results

#80 - Update Job status when failed

Issue - State: open - Opened by charhart about 6 years ago
Labels: year1, logging, jobs

#79 - Results Viewer Updates

Issue - State: open - Opened by charhart about 6 years ago
Labels: year1, ui, results

#78 - Ability to do set math on sets of ids

Issue - State: open - Opened by charhart about 6 years ago
Labels: year1, nlpql, algorithms

#77 - APIs to get tf-idf out of solr

Issue - State: open - Opened by charhart about 6 years ago
Labels: year1, solr, api

#76 - Set batch size on document set

Issue - State: open - Opened by charhart about 6 years ago
Labels: year1, api, luigi

#75 - Update generic_ingestion.md

Pull Request - State: closed - Opened by cjamadagni about 6 years ago

#74 - Create topic-modeling task

Issue - State: open - Opened by crherlihy about 6 years ago
Labels: year1, algorithms

#73 - Export API submodule

Pull Request - State: closed - Opened by cjamadagni about 6 years ago

#72 - Add 'source' to document set

Issue - State: closed - Opened by charhart about 6 years ago
Labels: enhancement, Top Issue

#71 - NLPQL rerun a job with new logic

Issue - State: open - Opened by charhart about 6 years ago
Labels: year1, nlpql, api

#70 - Add document source to documentset in NLPQL

Issue - State: open - Opened by charhart about 6 years ago
Labels: year1, nlpql

#69 - pipeline_config custom_arguments state reset problem

Issue - State: closed - Opened by richardboyd about 6 years ago - 1 comment

#68 - Map custom fields to previously defined termsets

Issue - State: closed - Opened by charhart about 6 years ago - 2 comments

#67 - Ability to get Mongo results as input to NLPQL data entities

Issue - State: closed - Opened by charhart about 6 years ago - 1 comment
Labels: enhancement, Top Issue

#66 - createReportTagList AND / OR

Issue - State: open - Opened by jduke99 about 6 years ago
Labels: enhancement, year1, nlpql

#65 - New Proximity Custom Task

Issue - State: closed - Opened by jduke99 about 6 years ago

#64 - Develop Design for Unified UX with SSO

Issue - State: open - Opened by jduke99 about 6 years ago
Labels: year1, security, ui, year2

#63 - Data Ingestion Running ToDo List

Issue - State: open - Opened by jduke99 about 6 years ago
Labels: enhancement, year1, ingestion

#62 - Word substitutions in subject_finder sometimes appear in the output.

Issue - State: closed - Opened by richardboyd about 6 years ago - 1 comment

#61 - Data Entity final values don't show up as final (only intermediate), unless operations exist

Issue - State: closed - Opened by charhart about 6 years ago - 1 comment

#60 - Configure Result Viewer in Docker compose

Issue - State: closed - Opened by charhart about 6 years ago

#59 - Support nested operations in NLPQL

Issue - State: closed - Opened by charhart about 6 years ago - 2 comments

#58 - Sanity check to test if services are up before running Phenotype job

Issue - State: open - Opened by charhart about 6 years ago
Labels: devops, year1, api

#57 - Change enum_list to value_list in value_extractor NLPQL

Issue - State: closed - Opened by charhart about 6 years ago - 1 comment
Labels: year1, nlpql, algorithms

#56 - Handle quotes in createDocumentSet

Issue - State: closed - Opened by charhart about 6 years ago - 1 comment

#55 - Problem with value extractor enumlist feature

Issue - State: closed - Opened by richardboyd about 6 years ago - 2 comments
Labels: year1, nlpql, algorithms

#54 - Sometimes results are blank

Issue - State: closed - Opened by charhart over 6 years ago
Labels: bug

#53 - Prompt users for rows missing in .env but in .env.example

Issue - State: open - Opened by charhart over 6 years ago
Labels: devops, year1

#52 - Change Delimiter on Ingest for CSV

Issue - State: open - Opened by jduke99 over 6 years ago
Labels: year1, ingestion

#51 - Add de-identification to NLPQL

Issue - State: open - Opened by charhart over 6 years ago
Labels: year1, nlpql, deidentification

#50 - Add preprocessing step option to NLPQL

Issue - State: closed - Opened by charhart over 6 years ago

#49 - In NLPQL, change enum_list to value_list

Issue - State: closed - Opened by charhart over 6 years ago - 1 comment

#48 - Custom collectors

Pull Request - State: closed - Opened by charhart over 6 years ago

#47 - add enum_list as a valid option for valid extractor in nlpql, #46

Pull Request - State: closed - Opened by charhart over 6 years ago

#46 - Support lists in ValueExtractor NLPQL

Issue - State: closed - Opened by charhart over 6 years ago - 1 comment

#45 - Add additional unit tests

Issue - State: open - Opened by charhart over 6 years ago
Labels: year1, nlpql, testing

#44 - support multivalued solr text field

Issue - State: closed - Opened by charhart over 6 years ago

#43 - Get value extraction list processing working again.

Issue - State: closed - Opened by richardboyd over 6 years ago - 1 comment

#42 - OHDSI cohort ID issues

Issue - State: open - Opened by richardboyd over 6 years ago - 3 comments
Labels: year1, api, omop

#41 - Ngram

Pull Request - State: closed - Opened by charhart over 6 years ago

#40 - "flask run" command not working

Issue - State: closed - Opened by richardboyd over 6 years ago - 1 comment

#39 - Automated Test Framework with Jenkins

Issue - State: closed - Opened by charhart over 6 years ago - 1 comment

#38 - Add filters to TermFinder

Issue - State: closed - Opened by charhart over 6 years ago

#37 - Negation errors

Issue - State: closed - Opened by jduke99 over 6 years ago - 2 comments

#36 - Ohdsi synonyms

Pull Request - State: closed - Opened by richardboyd over 6 years ago

#35 - PFTFinder and Proximity- incorporated changes from custom_parameter file

Pull Request - State: closed - Opened by prathamesh1993 over 6 years ago

#34 - Add Adjectives to Clarity.Synonyms

Issue - State: closed - Opened by jduke99 over 6 years ago

#33 - Expander api

Pull Request - State: closed - Opened by charhart over 6 years ago

#32 - adding proximity and pftfinder

Pull Request - State: closed - Opened by prathamesh1993 over 6 years ago

#31 - initial commit for using property based solr values

Pull Request - State: closed - Opened by charhart over 6 years ago

#30 - #28 add more robust doc set functions

Pull Request - State: closed - Opened by charhart over 6 years ago

#29 - termset tester

Issue - State: closed - Opened by charhart over 6 years ago - 4 comments

#28 - Change documentset creation to more rubust function

Issue - State: closed - Opened by jduke99 over 6 years ago - 3 comments
Labels: Top Issue

#27 - ngram without OHDSI cohort

Issue - State: closed - Opened by jduke99 over 6 years ago - 1 comment

#26 - Add a createReportTypeList for simple documentset creation

Issue - State: closed - Opened by jduke99 over 6 years ago - 1 comment
Labels: enhancement

#25 - Modules

Pull Request - State: closed - Opened by charhart over 6 years ago

#24 - Solr field mapping configuration

Issue - State: closed - Opened by charhart over 6 years ago - 1 comment

#23 - Job Kill API call

Issue - State: closed - Opened by jduke99 over 6 years ago - 1 comment

#22 - NLPQL Runner Web Page

Issue - State: closed - Opened by jduke99 over 6 years ago - 1 comment

#21 - Sync up documentation for methods with pipeline output

Issue - State: closed - Opened by jduke99 over 6 years ago

#20 - Move synonyms, word variants, etc. to Term Set creation functions

Issue - State: closed - Opened by jduke99 over 6 years ago - 1 comment

#19 - Change "Custom" algorithm framing

Issue - State: closed - Opened by jduke99 over 6 years ago - 1 comment

#18 - pft_algo and proximity_search

Pull Request - State: closed - Opened by prathamesh1993 over 6 years ago

#17 - bug fixes for subject_finder

Pull Request - State: closed - Opened by richardboyd over 6 years ago

#16 - Lexical variant library

Issue - State: closed - Opened by charhart over 6 years ago - 3 comments

#15 - add limit support to nlpql

Pull Request - State: closed - Opened by charhart over 6 years ago

#14 - fix utilities misspelling and add TNMStager pipeline

Pull Request - State: closed - Opened by charhart over 6 years ago

#13 - Datediff range

Issue - State: open - Opened by jduke99 over 6 years ago
Labels: year1, nlpql, algorithms

#12 - Allow multiple logical statements in final

Issue - State: closed - Opened by jduke99 over 6 years ago - 1 comment
Labels: year1, nlpql, algorithms

#11 - Allow creating phenotypes (finals) that combine other finals

Issue - State: closed - Opened by jduke99 over 6 years ago - 1 comment
Labels: question

#10 - Add Doc Limit to Debug

Issue - State: closed - Opened by jduke99 over 6 years ago - 1 comment
Labels: Top Issue

#9 - extract out mongo writer, fix numeric compartor

Pull Request - State: closed - Opened by charhart over 6 years ago

#8 - Numeric comparisons in NLPQL don't respect floats

Issue - State: closed - Opened by charhart over 6 years ago

#7 - NLPQL Custom Solr Query

Issue - State: closed - Opened by charhart over 6 years ago - 1 comment

#6 - Integrate the Columbia measurement extraction code into the pipeline

Issue - State: closed - Opened by charhart over 6 years ago - 1 comment

#5 - Integrate the Tumor Stage extraction code into the pipeline

Issue - State: closed - Opened by charhart over 6 years ago - 1 comment

#4 - Link NLP Ingest in Docker Compose

Issue - State: closed - Opened by charhart over 6 years ago - 1 comment

#3 - Lowercase solr filter

Pull Request - State: closed - Opened by charhart over 6 years ago

#2 - Readme instructions out of date

Issue - State: closed - Opened by jpfairbanks over 6 years ago - 1 comment

#1 - Create LICENSE

Pull Request - State: closed - Opened by charhart over 6 years ago

GitHub / ClarityNLP/ClarityNLP issues and pull requests