Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / Charestlab/pyGLMdenoise issues and pull requests

#79 - Update requirements.txt

Pull Request - State: closed - Opened by alireza-kr 9 months ago

#78 - Question regarding running the package

Issue - State: open - Opened by ShreyasFadnavis almost 3 years ago - 1 comment

#77 - pass design by onset time and duration pairs

Issue - State: open - Opened by CompuNeuroPsychiatryLabEinKerem almost 4 years ago - 1 comment

#76 - default params on single trial branch

Issue - State: closed - Opened by iancharest about 4 years ago

#74 - ols inv when zero regressors

Pull Request - State: open - Opened by iancharest about 4 years ago - 4 comments

#73 - work in progress

Pull Request - State: open - Opened by iancharest about 4 years ago - 3 comments

#72 - indexing error in optimiseHRF

Issue - State: open - Opened by ilogue over 4 years ago - 1 comment

#71 - Importing glmdenoise does not import all submodules of io subpackage

Issue - State: closed - Opened by adkipnis over 4 years ago - 6 comments

#69 - carry over BIDS file naming convention to outputs.

Issue - State: open - Opened by iancharest over 5 years ago

#68 - Plot hrf

Issue - State: open - Opened by ilogue over 5 years ago

#67 - Mean mask as param (off, fmriprep)

Issue - State: open - Opened by ilogue over 5 years ago

#66 - support multiple stim durations

Issue - State: open - Opened by ilogue over 5 years ago

#65 - hrf should only be assigned if not in params already

Issue - State: closed - Opened by ilogue over 5 years ago

#64 - MAINT: Adds Python 3.6, 3.7, 3.8 to Travis config

Pull Request - State: closed - Opened by arokem over 5 years ago - 2 comments

#63 - Python 3.6 + 3.7?

Issue - State: closed - Opened by arokem over 5 years ago - 3 comments

#62 - Issues fix

Pull Request - State: closed - Opened by iancharest over 5 years ago

#61 - make a GIF of SNRbefore SNRafter

Issue - State: closed - Opened by iancharest over 5 years ago - 1 comment

#59 - whiten_data poly_degs argument default is mutable

Issue - State: closed - Opened by ilogue almost 6 years ago

#58 - datalad IncompleteResultsError

Issue - State: closed - Opened by ilogue almost 6 years ago - 1 comment

#57 - public datasets revisited

Pull Request - State: closed - Opened by ilogue almost 6 years ago

#56 - build in inserting of fmriprep dataset_description

Issue - State: closed - Opened by ilogue almost 6 years ago

#55 - public datasets

Pull Request - State: closed - Opened by ilogue almost 6 years ago - 1 comment

#54 - output denoised time-series if requested by user

Issue - State: open - Opened by iancharest almost 6 years ago

#52 - added some imagestacks of mean tpats

Pull Request - State: closed - Opened by iancharest almost 6 years ago

#51 - datalad for downloading example data

Issue - State: closed - Opened by iancharest almost 6 years ago

#50 - Clarify condition order for user

Issue - State: open - Opened by ilogue almost 6 years ago

#49 - simplify output structure of fitting parallel job

Issue - State: open - Opened by ilogue almost 6 years ago

#48 - Need spatialdims for plotting: Accept data in 4D and optional dim order in params?

Issue - State: closed - Opened by ilogue almost 6 years ago - 2 comments

#47 - bug in calculation of R2s

Issue - State: open - Opened by ilogue almost 6 years ago - 1 comment

#46 - match event files for missing bold files in fmriprep

Issue - State: closed - Opened by ilogue almost 6 years ago

#45 - BIDS filepath with build_path

Issue - State: closed - Opened by ilogue almost 6 years ago

#44 - Alternatively use bids.layout.get_tr() instead of full metadata

Issue - State: open - Opened by ilogue almost 6 years ago

#43 - bids: how to filter out 'variants'

Issue - State: closed - Opened by ilogue almost 6 years ago - 3 comments

#42 - Bids: if no sessions, don't use session as query param

Issue - State: closed - Opened by ilogue almost 6 years ago

#41 - Separate HRF per voxel

Issue - State: open - Opened by lajnd almost 6 years ago - 1 comment

#40 - Different stimulus durations when convolving DMs

Issue - State: open - Opened by lajnd almost 6 years ago - 1 comment

#39 - polys

Issue - State: closed - Opened by lajnd almost 6 years ago - 2 comments

#38 - optimise or not as a def to clean up fit()

Issue - State: closed - Opened by iancharest almost 6 years ago - 1 comment

#37 - Estimate hrf

Pull Request - State: closed - Opened by lajnd almost 6 years ago

#36 - Store outputs as files and fix bids

Pull Request - State: closed - Opened by ilogue almost 6 years ago - 2 comments

#35 - ian's implementation

Pull Request - State: closed - Opened by iancharest almost 6 years ago

#34 - in branch createstimmats, check crossval

Issue - State: closed - Opened by iancharest almost 6 years ago - 1 comment

#33 - branch estimateHRF only 2 runs on git

Issue - State: closed - Opened by iancharest almost 6 years ago - 1 comment

#32 - Store output as files

Pull Request - State: closed - Opened by ilogue almost 6 years ago - 1 comment

#31 - reorganized docs

Pull Request - State: closed - Opened by ilogue almost 6 years ago

#30 - docs: separate page per module with --separate flag

Issue - State: closed - Opened by ilogue almost 6 years ago

#29 - image stack plot: skip if empty

Issue - State: open - Opened by ilogue almost 6 years ago

#28 - Report and figures

Pull Request - State: closed - Opened by ilogue almost 6 years ago

#27 - figure: hrf

Issue - State: closed - Opened by ilogue almost 6 years ago

#26 - figure: nregressors curve

Issue - State: closed - Opened by ilogue almost 6 years ago

#25 - figure: imagestack

Issue - State: closed - Opened by ilogue almost 6 years ago

#24 - figure: scattersparse

Issue - State: closed - Opened by ilogue almost 6 years ago

#23 - html report

Issue - State: closed - Opened by ilogue almost 6 years ago

#22 - BIDS app

Issue - State: open - Opened by ilogue almost 6 years ago

#21 - Support separate sessions

Pull Request - State: closed - Opened by ilogue almost 6 years ago

#20 - BIDS: separate sessions

Issue - State: closed - Opened by ilogue almost 6 years ago

#19 - output as BIDS derivative glmdenoise: pass outdir derivatives/glmdenoise/sub-1/ses-1/

Issue - State: closed - Opened by ilogue almost 6 years ago - 1 comment

#18 - Can ignore errors if looping over subjects etc

Issue - State: open - Opened by ilogue almost 6 years ago

#17 - warn if fmriprep not mentioned in dataset_description.json

Issue - State: open - Opened by ilogue almost 6 years ago
Labels: wishlist

#16 - logging: sent all print statements to a log object so we can redirect / silence

Issue - State: open - Opened by ilogue almost 6 years ago - 3 comments

#15 - File I/O and BIDS

Pull Request - State: closed - Opened by ilogue almost 6 years ago

#14 - select_voxels_nr_selection when no voxels pass cutoff

Issue - State: open - Opened by ilogue almost 6 years ago
Labels: wishlist

#13 - select_voxels_nr_selection can use mask

Issue - State: closed - Opened by ilogue almost 6 years ago - 1 comment
Labels: wishlist

#12 - make image stack

Pull Request - State: closed - Opened by ilogue almost 6 years ago

#11 - auto-generated docs

Pull Request - State: closed - Opened by ilogue almost 6 years ago

#10 - added notebook

Pull Request - State: closed - Opened by lajnd almost 6 years ago - 1 comment

#9 - Console interface

Pull Request - State: closed - Opened by ilogue almost 6 years ago

#8 - Choosing noise regressors (step 7)

Pull Request - State: closed - Opened by ilogue almost 6 years ago - 1 comment

#7 - basic documentation

Pull Request - State: closed - Opened by ilogue almost 6 years ago

#6 - extra artifact regressors

Issue - State: open - Opened by ilogue almost 6 years ago
Labels: wishlist

#5 - pypi releasing with twine

Pull Request - State: closed - Opened by ilogue almost 6 years ago

#4 - Auto determine HRF using FIR

Issue - State: closed - Opened by lajnd almost 6 years ago - 1 comment
Labels: wishlist

#3 - basic travis setup

Pull Request - State: closed - Opened by ilogue almost 6 years ago

#2 - basic unit tests setup

Pull Request - State: closed - Opened by ilogue almost 6 years ago

#1 - basic python packaging

Pull Request - State: closed - Opened by ilogue almost 6 years ago