CellProfiler/centrosome issues and pull requests

#127 - Expand deps

Pull Request - State: closed - Opened by gnodar01 2 months ago

#126 - Expand upper dependency boundaries

Pull Request - State: closed - Opened by afermg 2 months ago - 4 comments

#125 - Bumping up dependencies

Issue - State: open - Opened by afermg 2 months ago - 2 comments

#124 - Fix build

Pull Request - State: closed - Opened by gnodar01 7 months ago - 1 comment

#123 - Compatibility updates

Pull Request - State: closed - Opened by joshua-gould 10 months ago - 1 comment

#122 - bug and hack

Issue - State: closed - Opened by Doondondon over 1 year ago - 1 comment

#121 - Build error on Windows

Issue - State: closed - Opened by hinerm over 1 year ago - 4 comments

#120 - Bump to 1.2.2

Pull Request - State: closed - Opened by gnodar01 over 1 year ago

#119 - Update heap.pxd

Pull Request - State: closed - Opened by FirstGalacticEmpire over 1 year ago - 1 comment

#118 - Issue with Centrosome/propagate.pyx Package

Issue - State: closed - Opened by cliandouble08 over 1 year ago - 3 comments

#117 - Rename test action, test in more cases

Pull Request - State: closed - Opened by bethac07 over 1 year ago

#116 - Cython3 compatibility

Pull Request - State: closed - Opened by bethac07 over 1 year ago - 2 comments

#115 - Change matplotlib to >=3.1.3

Pull Request - State: closed - Opened by JacobHayes almost 2 years ago - 4 comments

#114 - Update classifiers field

Pull Request - State: closed - Opened by gnodar01 over 2 years ago

#113 - Bump version to 1.2.1

Pull Request - State: closed - Opened by gnodar01 over 2 years ago

#112 - Address div by 0 warnings in tests

Issue - State: open - Opened by gnodar01 over 2 years ago
Labels: Task

#111 - Fix a typo

Pull Request - State: closed - Opened by bethac07 over 2 years ago

#110 - Deprecations, numpy 1.23 compatibility

Pull Request - State: closed - Opened by bethac07 over 2 years ago - 9 comments

#109 - Fix deprecations, numpy 1.23 compatibility

Pull Request - State: closed - Opened by bethac07 over 2 years ago

#108 - Update to fix deprecation warnings

Pull Request - State: closed - Opened by bethac07 over 2 years ago - 2 comments

#107 - Address numpy deprecation warnings

Pull Request - State: closed - Opened by gnodar01 over 2 years ago

#106 - Enable Zernike calculation for larger images without tons of memory

Issue - State: open - Opened by bethac07 about 3 years ago

#105 - ModuleNotFoundError: No module named 'FasterCode'

Issue - State: closed - Opened by Sudeep2448 over 3 years ago

#104 - Fix skimage deprecation

Pull Request - State: closed - Opened by DavidStirling over 4 years ago - 1 comment

#103 - Fix sorting of cell objects in Python 3

Pull Request - State: closed - Opened by DavidStirling over 4 years ago

#102 - Fix Numpy deprecation warning

Pull Request - State: closed - Opened by DavidStirling over 4 years ago - 1 comment

#101 - build from source issue for 1.1.7

Issue - State: open - Opened by j-christ almost 5 years ago

#100 - Black formatting leads to python2 syntax error

Issue - State: open - Opened by dummyindex almost 5 years ago - 1 comment

#99 - remove comma

Pull Request - State: closed - Opened by jburel almost 5 years ago - 1 comment

#98 - Drop comma that causes install to fail

Pull Request - State: closed - Opened by nicholsn almost 5 years ago - 8 comments

#97 - Raise error with excessive adaptive threshold window size

Pull Request - State: closed - Opened by DavidStirling almost 5 years ago

#96 - Fix for Python 3.7

Pull Request - State: closed - Opened by DavidStirling about 5 years ago

#95 - Remove numpy_histogram

Pull Request - State: closed - Opened by DavidStirling over 5 years ago - 1 comment

#94 - lapjv solver

Issue - State: open - Opened by berhane about 6 years ago

#93 - Update filter.py

Pull Request - State: closed - Opened by bethac07 about 6 years ago

#92 - Index error in circular_average_filter

Issue - State: closed - Opened by bethac07 about 6 years ago

#91 - Explicitly decompoze zip into a list

Pull Request - State: closed - Opened by AetherUnbound over 6 years ago
Labels: bug

#90 - filter.py tests fail on Python 3.7 but pass on Python 2.7, 3.5, and 3.6

Issue - State: open - Opened by cclauss over 6 years ago - 3 comments

#89 - Update travis to only deploy on 1 build in matrix

Pull Request - State: closed - Opened by AetherUnbound over 6 years ago

#88 - Travis CI: Add Python 3.6 in allow_failures mode and flake8 tests

Pull Request - State: closed - Opened by cclauss over 6 years ago

#87 - Undefined names on ./centrosome/filter.py line 718

Issue - State: closed - Opened by cclauss over 6 years ago

#86 - Travis CI: Add flake8 to find syntax errors & undefined names

Pull Request - State: closed - Opened by cclauss over 6 years ago - 1 comment

#85 - print() is a function in Python 3

Pull Request - State: closed - Opened by cclauss over 6 years ago - 2 comments

#84 - Add support for Python 3

Pull Request - State: closed - Opened by jni almost 7 years ago - 13 comments

#83 - Fix minor numerical error in Otsu variance computation

Pull Request - State: closed - Opened by hellowhistler almost 7 years ago - 3 comments

#82 - Release 1.1.0

Pull Request - State: closed - Opened by mcquin over 7 years ago

#81 - Centrosome without Cython

Pull Request - State: closed - Opened by mcquin over 7 years ago

#80 - Don't smooth when smoothing factor is 0.

Pull Request - State: closed - Opened by mcquin over 7 years ago

#79 - centrosome.filter ZeroDivisionError

Issue - State: closed - Opened by mcquin over 7 years ago

#78 - ImportError: No module named Cython.Build

Issue - State: closed - Opened by mcquin over 7 years ago - 28 comments

#77 - Error pip installing centrosome on windows

Issue - State: closed - Opened by bethac07 over 7 years ago - 2 comments

#76 - Release 1.0.8

Pull Request - State: closed - Opened by mcquin over 7 years ago

#75 - Bugfix/update to numpy 1.13

Pull Request - State: closed - Opened by oleksandr-pavlyk over 7 years ago - 3 comments

#74 - Feature/faster zernike

Pull Request - State: closed - Opened by oleksandr-pavlyk over 7 years ago - 6 comments

#73 - Remove Tox configuration

Issue - State: open - Opened by 0x00b1 about 8 years ago

#72 - Upgrade to NumPy 1.12.0 (resolves #71)

Pull Request - State: closed - Opened by 0x00b1 about 8 years ago

#71 - Upgrade to NumPy 1.12.0

Issue - State: closed - Opened by 0x00b1 about 8 years ago

#70 - project description

Issue - State: open - Opened by swharden about 8 years ago - 1 comment

#69 - Chan-Vese

Issue - State: closed - Opened by 0x00b1 over 8 years ago - 1 comment

#68 - trim trailing whitespace

Pull Request - State: closed - Opened by mcquin over 8 years ago

#67 - Trim trailing whitespace in filter.py and test_filter.py

Issue - State: closed - Opened by mcquin over 8 years ago

#66 - Sobel filter for volumes

Pull Request - State: closed - Opened by mcquin over 8 years ago - 1 comment

#65 - 3D Sobel operator

Issue - State: closed - Opened by mcquin over 8 years ago

#64 - Add files via upload

Pull Request - State: closed - Opened by PetterRanefall over 8 years ago

#63 - Add files via upload

Pull Request - State: closed - Opened by PetterRanefall over 8 years ago - 2 comments

#62 - Add files via upload

Pull Request - State: closed - Opened by PetterRanefall over 8 years ago

#61 - Added granulometry_filter to filter.py

Pull Request - State: closed - Opened by tischi over 8 years ago - 1 comment

#60 - manylinux

Pull Request - State: closed - Opened by 0x00b1 over 8 years ago

#59 - Issues/58

Pull Request - State: closed - Opened by 0x00b1 over 8 years ago

#58 - manylinux support

Issue - State: closed - Opened by 0x00b1 over 8 years ago

#57 - centrosome.classification

Pull Request - State: closed - Opened by 0x00b1 almost 9 years ago - 2 comments

#56 - centrosome.neighmovetrack

Pull Request - State: closed - Opened by 0x00b1 almost 9 years ago - 2 comments

#55 - HTML Documentation in rtd

Issue - State: closed - Opened by chsasank almost 9 years ago - 1 comment

#54 - Update setup.py

Pull Request - State: closed - Opened by lowks almost 9 years ago - 1 comment

#53 - Support for ijv format input into construct_zernike_polynomials

Pull Request - State: closed - Opened by LeeKamentsky almost 9 years ago

#52 - Add a weight parameter to construct_zernike_polynomials

Issue - State: open - Opened by LeeKamentsky almost 9 years ago - 1 comment

#51 - remove fixup_scipy_ndimage_result

Issue - State: open - Opened by braymp about 9 years ago - 1 comment
Labels: Future consideration, Task

#50 - Replace and deprecate centrosome.mode

Issue - State: open - Opened by LeeKamentsky about 9 years ago

#49 - Fixes #46 decimate the rank order if > 255 entries

Pull Request - State: closed - Opened by LeeKamentsky about 9 years ago

#48 - pip install centrosome tries compiling *.c

Issue - State: open - Opened by LeeKamentsky about 9 years ago - 8 comments

#47 - Kirsch operator

Pull Request - State: closed - Opened by 0x00b1 about 9 years ago - 1 comment

#46 - Median filter overflows for large filter sizes

Issue - State: closed - Opened by LeeKamentsky about 9 years ago - 1 comment

#45 - Minor Travis CI fixes

Pull Request - State: closed - Opened by 0x00b1 over 9 years ago

#44 - Added skeleton_length to compute length of skeletonized labels + tests

Pull Request - State: closed - Opened by LeeKamentsky over 9 years ago

#43 - Align: Implement aligning color images similarly

Issue - State: closed - Opened by braymp over 9 years ago - 1 comment
Labels: Feature request

#42 - Issues/39

Pull Request - State: closed - Opened by LeeKamentsky over 9 years ago

#41 - Fixes #40 return a value

Pull Request - State: closed - Opened by LeeKamentsky over 9 years ago - 1 comment

#40 - watershed does not return a value

Issue - State: closed - Opened by LeeKamentsky over 9 years ago

#39 - add .gitignore

Issue - State: closed - Opened by LeeKamentsky over 9 years ago - 1 comment

#38 - Tests for centrosome.cpmorphology.openlines

Issue - State: open - Opened by LeeKamentsky over 9 years ago
Labels: enhancement

#37 - morphological operation to distinguish lines from dots (fixes #36)

Pull Request - State: closed - Opened by 0x00b1 over 9 years ago - 2 comments

#36 - morphological operation to distinguish lines from dots

Issue - State: closed - Opened by 0x00b1 over 9 years ago
Labels: enhancement

#35 - Python 3 (WIP)

Pull Request - State: closed - Opened by 0x00b1 over 9 years ago

#34 - pytest-flakes (fixes #33) (WIP)

Pull Request - State: closed - Opened by 0x00b1 over 9 years ago

#33 - pytest-flakes

Issue - State: open - Opened by 0x00b1 over 9 years ago
Labels: bug

#32 - optimize imports

Issue - State: open - Opened by 0x00b1 over 9 years ago
Labels: bug

#31 - PEP8 compliance

Issue - State: open - Opened by 0x00b1 over 9 years ago
Labels: bug

#30 - use skimage.morphology.watershed (fixes #15)

Pull Request - State: closed - Opened by 0x00b1 over 9 years ago - 1 comment
Labels: enhancement

#29 - removed “main” artifacts from centrosome.zernike (fixes #24)

Pull Request - State: closed - Opened by 0x00b1 over 9 years ago
Labels: bug

#28 - removed “main” artifacts from centrosome.otsu (fixes #23)

Pull Request - State: closed - Opened by 0x00b1 over 9 years ago
Labels: bug

GitHub / CellProfiler/centrosome issues and pull requests