Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / CanDIG/CanDIGv2 issues and pull requests

#100 - update chord-metadata to use secrets file for password

Pull Request - State: closed - Opened by daisieh almost 3 years ago - 3 comments

#99 - Authentication - Tyk and Keycloak

Pull Request - State: closed - Opened by amanjeev almost 3 years ago - 3 comments
Labels: CanDIGv2

#98 - update htsget-server to stable

Pull Request - State: closed - Opened by daisieh almost 3 years ago

#97 - Conda fixes + Vagrant libvirt addition

Pull Request - State: closed - Opened by amanjeev about 3 years ago - 4 comments
Labels: bug, CanDIGv2

#96 - Hotfix/submodules redux redux

Pull Request - State: closed - Opened by daisieh about 3 years ago

#95 - Hotfix/submodules redux

Pull Request - State: closed - Opened by daisieh about 3 years ago

#94 - Move submodules to candig forks

Pull Request - State: closed - Opened by daisieh about 3 years ago

#93 - Hotfix: update htsget app pointer

Pull Request - State: closed - Opened by daisieh about 3 years ago

#92 - Reorganize submodules

Pull Request - State: closed - Opened by daisieh about 3 years ago

#91 - Post Auth Merge Fixes

Pull Request - State: closed - Opened by shaikh-rashid about 3 years ago - 2 comments
Labels: bug, enhancement, help wanted, Security, Architecture, CanDIGv2

#90 - update datasets submodule to point to develop branch

Pull Request - State: closed - Opened by daisieh about 3 years ago

#89 - update to new stable commit for htsget

Pull Request - State: closed - Opened by daisieh about 3 years ago

#88 - Switch for registries in Jenkins

Pull Request - State: closed - Opened by daisieh about 3 years ago

#87 - Switch back to Dockerhub registry

Pull Request - State: closed - Opened by daisieh about 3 years ago - 1 comment

#86 - add GitHub credentials

Pull Request - State: closed - Opened by daisieh about 3 years ago - 1 comment

#85 - update htsget submodule

Pull Request - State: closed - Opened by daisieh about 3 years ago

#84 - Pin version of alpine to 3.13

Pull Request - State: closed - Opened by daisieh about 3 years ago - 1 comment

#83 - create Jenkinsfile

Pull Request - State: closed - Opened by daisieh about 3 years ago

#82 - Initial jenkins setup

Pull Request - State: closed - Opened by daisieh about 3 years ago

#81 - update cancogen-dashboard

Pull Request - State: closed - Opened by daisieh over 3 years ago - 1 comment

#80 - bump toil to 5.3.1, following 5.3.x release

Pull Request - State: closed - Opened by shaikh-rashid over 3 years ago

#79 - Bridge-net, not bridge

Pull Request - State: closed - Opened by daisieh over 3 years ago

#78 - Shaikh/traefik2

Pull Request - State: closed - Opened by daisieh over 3 years ago

#77 - CanDIG release v0.5.0

Pull Request - State: closed - Opened by shaikh-rashid over 3 years ago - 1 comment

#76 - Traefik2 and other post-auth fixes

Pull Request - State: closed - Opened by shaikh-rashid over 3 years ago
Labels: enhancement, Architecture, CanDIGv2

#75 - Need federation peers list

Issue - State: closed - Opened by daisieh over 3 years ago - 1 comment

#74 - Pull images instead of making them every time

Pull Request - State: closed - Opened by daisieh over 3 years ago

#73 - Missing docker-compose installation

Issue - State: closed - Opened by brouillette over 3 years ago - 2 comments

#72 - Track progress in vagrant provisioning; small vagrant fixes

Pull Request - State: closed - Opened by daisieh over 3 years ago

#71 - Updates to Vagrant, deploy OpenStack instance from Vagrant

Pull Request - State: closed - Opened by daisieh over 3 years ago
Labels: Submodule update

#70 - Documentation

Issue - State: closed - Opened by daisieh over 3 years ago - 1 comment

#69 - Update requirements.txt

Pull Request - State: closed - Opened by shaikh-rashid over 3 years ago

#68 - don't build rust for cryptography

Pull Request - State: closed - Opened by daisieh over 3 years ago

#67 - Update datasets: add required packages gcc libc-dev

Pull Request - State: closed - Opened by daisieh over 3 years ago - 2 comments

#66 - v0.4.x merge window changes

Pull Request - State: closed - Opened by shaikh-rashid over 3 years ago

#65 - Fix pip version to 20.2.4

Pull Request - State: closed - Opened by daisieh over 3 years ago

#64 - New and improved Authz : Merge to develop

Pull Request - State: closed - Opened by brouillette almost 4 years ago - 1 comment

#63 - Add Data Flow Diagram skeleton in the README

Pull Request - State: closed - Opened by amanjeev almost 4 years ago - 2 comments
Labels: Submodule update

#62 - Dashboard global envs

Pull Request - State: closed - Opened by shaikh-rashid almost 4 years ago

#61 - Authz structure for the permissions JWT in Vault (COGG-103)

Pull Request - State: closed - Opened by amanjeev almost 4 years ago - 2 comments

#60 - COGG-143

Pull Request - State: closed - Opened by dashaylan almost 4 years ago

#59 - Quick fix to stable

Pull Request - State: closed - Opened by shaikh-rashid almost 4 years ago - 1 comment

#58 - [COGG-103] - TESTING JIRA 2

Pull Request - State: closed - Opened by amanjeev almost 4 years ago

#57 - COG-75 - TESTING JIRA

Pull Request - State: closed - Opened by amanjeev almost 4 years ago

#56 - Bringing arbiter changes from Brennan to COG-75 branch

Pull Request - State: closed - Opened by amanjeev almost 4 years ago

#55 - Merge AuthZ (Tyk, Keycloak, Vault) changes to develop

Pull Request - State: closed - Opened by brouillette about 4 years ago

#54 - WIP: COG-14

Pull Request - State: closed - Opened by amanjeev about 4 years ago - 2 comments

#53 - Felipe fix tox

Pull Request - State: closed - Opened by fcoralsasso about 4 years ago

#52 - Opa integration

Pull Request - State: closed - Opened by afrosimon about 4 years ago - 1 comment

#51 - Vault documentation

Pull Request - State: closed - Opened by afrosimon about 4 years ago - 2 comments

#50 - Stable version: v0.3.5

Pull Request - State: closed - Opened by shaikh-rashid about 4 years ago

#49 - Stable version: v0.3.3

Pull Request - State: closed - Opened by shaikh-rashid about 4 years ago

#48 - Monitoring services enabled

Pull Request - State: closed - Opened by shaikh-rashid about 4 years ago

#47 - Stable

Pull Request - State: closed - Opened by shaikh-rashid about 4 years ago

#46 - modules update with docker-compose configg for new candig services

Pull Request - State: closed - Opened by shaikh-rashid over 4 years ago
Labels: CanDIGv2

#45 - Felipe fix doc

Pull Request - State: closed - Opened by fcoralsasso over 4 years ago

#44 - Felipe add prometheus doc

Pull Request - State: closed - Opened by fcoralsasso over 4 years ago

#43 - Felipe add prometheus

Pull Request - State: closed - Opened by fcoralsasso over 4 years ago

#42 - Felipe change federation start command

Pull Request - State: closed - Opened by fcoralsasso over 4 years ago

#41 - Felipe add authz service

Pull Request - State: closed - Opened by fcoralsasso over 4 years ago

#40 - Felipe add dataset service

Pull Request - State: closed - Opened by fcoralsasso over 4 years ago

#39 - Felipe add rna get

Pull Request - State: closed - Opened by fcoralsasso over 4 years ago

#38 - Felipe add candig server

Pull Request - State: closed - Opened by fcoralsasso over 4 years ago

#37 - Felipe add tox docs

Pull Request - State: closed - Opened by fcoralsasso over 4 years ago

#36 - Felipe add tox dep

Pull Request - State: closed - Opened by fcoralsasso over 4 years ago

#35 - RNAget, REFget, Dataset, Authorization

Issue - State: closed - Opened by shaikh-rashid over 4 years ago

#34 - Use tox to manage python virtualenv and run services

Issue - State: closed - Opened by shaikh-rashid over 4 years ago

#33 - Felipe add docker free install

Pull Request - State: closed - Opened by fcoralsasso over 4 years ago

#32 - Evaluate process isolation and sanboxing options for CanDIGv2

Issue - State: closed - Opened by shaikh-rashid over 4 years ago
Labels: CanDIGv2

#31 - AuthZ and OPA integration

Issue - State: closed - Opened by shaikh-rashid over 4 years ago
Labels: CanDIGv2

#29 - Logging and monitoring infrastructure

Issue - State: closed - Opened by shaikh-rashid over 4 years ago
Labels: Architecture, CanDIGv2

#28 - Federation service integration

Issue - State: closed - Opened by shaikh-rashid over 4 years ago
Labels: Architecture, CanDIGv2

#27 - Create initial rollout of Tyk and Keycloak

Issue - State: closed - Opened by shaikh-rashid over 4 years ago
Labels: Architecture, CanDIGv2

#26 - Demo: variant service and metadata service

Issue - State: closed - Opened by shaikh-rashid over 4 years ago
Labels: CanDIGv2

#25 - Add CanDIGv1 metadata service to infrastructure

Issue - State: closed - Opened by shaikh-rashid over 4 years ago
Labels: CanDIGv2

#24 - De-dockerization

Issue - State: closed - Opened by shaikh-rashid over 4 years ago
Labels: Architecture, CanDIGv2

#23 - Current Tasklist

Issue - State: closed - Opened by shaikh-rashid over 4 years ago

#22 - Demo: Logging and OPA authorization in action

Issue - State: closed - Opened by shaikh-rashid over 4 years ago
Labels: Architecture, CanDIGv2

#21 - Demo: MinIO, CHORD DRS, and htsget_app

Issue - State: closed - Opened by shaikh-rashid over 4 years ago
Labels: CanDIGv2

#20 - MinIO, DRS, HTSGET End-to-end

Issue - State: closed - Opened by shaikh-rashid over 4 years ago
Labels: CanDIGv2

#19 - Integrate normalize-on-ingest work into CanDIGv2

Issue - State: closed - Opened by shaikh-rashid over 4 years ago
Labels: Architecture, CanDIGv2

#18 - HPC/conda integration

Pull Request - State: closed - Opened by shaikh-rashid over 4 years ago
Labels: Architecture, CanDIGv2

#17 - Jade data repo

Pull Request - State: closed - Opened by kcolford almost 5 years ago

#16 - Removes HTS Nexus and replaces it with htsget_app

Pull Request - State: closed - Opened by kcolford almost 5 years ago - 1 comment

#15 - fix (docker daemon config):

Pull Request - State: closed - Opened by amanjeev almost 5 years ago

#14 - working system with htsget server

Pull Request - State: closed - Opened by shaikh-rashid almost 6 years ago
Labels: Architecture, CanDIGv2

#13 - Igv js

Pull Request - State: closed - Opened by shaikh-rashid almost 6 years ago
Labels: Architecture, CanDIGv2

#12 - updated README

Pull Request - State: closed - Opened by shaikh-rashid almost 6 years ago - 1 comment
Labels: CanDIGv2

#11 - Consul

Pull Request - State: closed - Opened by shaikh-rashid almost 6 years ago - 1 comment

#10 - OIDC issues for interop

Issue - State: closed - Opened by ljdursi almost 6 years ago - 1 comment
Labels: Security, CanDIGv2

#9 - Variant API in collaboration w/ OICR

Issue - State: closed - Opened by ljdursi almost 6 years ago - 1 comment
Labels: CanDIGv2

#8 - Integrate authz infrastructure into PoC

Issue - State: closed - Opened by ljdursi almost 6 years ago
Labels: Security, Architecture, CanDIGv2

#7 - Authz tooling

Issue - State: closed - Opened by ljdursi almost 6 years ago - 1 comment
Labels: Security, CHORD, Architecture, CanDIGv2

#6 - Integrated logging

Issue - State: closed - Opened by ljdursi almost 6 years ago
Labels: Architecture, CanDIGv2

#5 - WES prototype

Issue - State: closed - Opened by ljdursi almost 6 years ago
Labels: Architecture, CanDIGv2

#4 - Genomic/Phenotypic queries using GraphQL

Issue - State: open - Opened by ljdursi almost 6 years ago
Labels: Architecture, CanDIGv2

#3 - GraphQL for complex clin/phen queries

Issue - State: open - Opened by ljdursi almost 6 years ago
Labels: Architecture, CanDIGv2

#2 - FHIR Clin/Phen server

Issue - State: closed - Opened by ljdursi almost 6 years ago - 1 comment
Labels: Architecture, CanDIGv2

#1 - Minio/DRS/htsget PoC

Issue - State: closed - Opened by ljdursi almost 6 years ago - 1 comment
Labels: Architecture, CanDIGv2