Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / Campbell-Muscle-Lab/FiberSim issues and pull requests

#106 - Equation numbers in the new KX = F page

Issue - State: closed - Opened by utkugulbulak 7 months ago - 1 comment
Labels: documentation

#105 - Sparse

Pull Request - State: closed - Opened by kenatcampbellmusclelab 8 months ago

#104 - Afterload

Pull Request - State: closed - Opened by kenatcampbellmusclelab 9 months ago

#103 - Isotypes

Pull Request - State: closed - Opened by kenatcampbellmusclelab 10 months ago

#102 - Bug in thin_kinetics batch file

Issue - State: open - Opened by CaterinaSquarci about 1 year ago

#101 - Pushing up

Pull Request - State: closed - Opened by kenatcampbellmusclelab about 1 year ago

#100 - Pushing up new documentation

Pull Request - State: closed - Opened by kenatcampbellmusclelab about 1 year ago

#99 - Sampling

Pull Request - State: closed - Opened by kenatcampbellmusclelab about 1 year ago

#98 - Myofibril

Pull Request - State: closed - Opened by kenatcampbellmusclelab about 1 year ago

#97 - Multithreading for Muscle class

Issue - State: closed - Opened by kenatcampbellmusclelab about 1 year ago - 1 comment
Labels: FiberCpp, Performance

#96 - Merge pull request #95 from Campbell-Muscle-Lab/master

Pull Request - State: closed - Opened by kenatcampbellmusclelab over 1 year ago

#95 - Tidying up

Pull Request - State: closed - Opened by kenatcampbellmusclelab over 1 year ago

#94 - Write m and c isotype rate functions to file

Issue - State: closed - Opened by kenatcampbellmusclelab about 2 years ago - 1 comment
Labels: enhancement

#93 - Demos now lead to slightly different results than with FiberSim1.2.0

Issue - State: closed - Opened by Sarah-Kst over 2 years ago - 1 comment
Labels: bug

#92 - Characterize_model feature does not work when no SL is specified

Issue - State: closed - Opened by Sarah-Kst over 2 years ago - 1 comment
Labels: bug

#91 - Adding exp recovery fit for fv curves

Pull Request - State: closed - Opened by Sarah-Kst over 2 years ago

#90 - Updating website doc before new release

Pull Request - State: closed - Opened by Sarah-Kst over 2 years ago

#89 - Improving half_sarcomere::myosin_kinetics function implementation

Issue - State: closed - Opened by Sarah-Kst over 2 years ago - 1 comment
Labels: seasoning, core model

#88 - Model comparision

Pull Request - State: closed - Opened by kenatcampbellmusclelab over 2 years ago

#87 - Load dep detachment rate

Pull Request - State: closed - Opened by Sarah-Kst almost 3 years ago

#86 - Add module for generating force-velocity curves

Issue - State: closed - Opened by Sarah-Kst almost 3 years ago - 2 comments
Labels: seasoning

#85 - Add force-dependent attachment rate

Issue - State: closed - Opened by Sarah-Kst almost 3 years ago
Labels: core model

#84 - Update myosin kinetics test

Issue - State: closed - Opened by Sarah-Kst almost 3 years ago - 1 comment
Labels: documentation, validation

#83 - Fitting single force-velocity curve

Pull Request - State: closed - Opened by Sarah-Kst almost 3 years ago

#82 - Poly function should be centered on "- x_ps"

Issue - State: closed - Opened by Sarah-Kst almost 3 years ago - 1 comment
Labels: bug, core model

#81 - Thin Filament Kinetics Test

Issue - State: closed - Opened by Sarah-Kst about 3 years ago
Labels: documentation, validation, core model

#80 - Adding version check

Pull Request - State: closed - Opened by Sarah-Kst about 3 years ago

#79 - Controlling threads

Issue - State: closed - Opened by kenatcampbellmusclelab about 3 years ago
Labels: enhancement

#77 - Pushing max threads option

Pull Request - State: closed - Opened by kenatcampbellmusclelab about 3 years ago

#76 - kens_tweaks

Pull Request - State: closed - Opened by kenatcampbellmusclelab about 3 years ago

#75 - Adding FiberSim version in metadata from model file

Issue - State: closed - Opened by Sarah-Kst about 3 years ago - 1 comment
Labels: enhancement, core model

#73 - Fv and power

Pull Request - State: closed - Opened by kenatcampbellmusclelab over 3 years ago

#72 - Check for actin and myosin filament rotations

Issue - State: closed - Opened by Sarah-Kst over 3 years ago - 2 comments
Labels: enhancement, core model

#71 - isAlive() method was renamed is_alive() in Python version 3.9

Issue - State: closed - Opened by Sarah-Kst over 3 years ago - 1 comment
Labels: minor

#70 - Trying to merge multi_bs

Pull Request - State: closed - Opened by kenatcampbellmusclelab over 3 years ago

#69 - Multi bs

Pull Request - State: closed - Opened by kenatcampbellmusclelab over 3 years ago

#68 - Starting numbers for numbering isotypes and isostates are different

Issue - State: closed - Opened by Sarah-Kst over 3 years ago - 1 comment
Labels: core model, minor

#67 - Force and MyBPC-dependent rate leads to no CB binding in the C-zone

Issue - State: closed - Opened by Sarah-Kst over 3 years ago - 1 comment

#66 - Dimer kinetics

Pull Request - State: closed - Opened by kenatcampbellmusclelab over 3 years ago

#65 - Visualization

Pull Request - State: closed - Opened by kenatcampbellmusclelab over 3 years ago

#64 - Logging

Pull Request - State: closed - Opened by kenatcampbellmusclelab over 3 years ago

#63 - MYBPC-dependent kinetics

Issue - State: closed - Opened by kenatcampbellmusclelab over 3 years ago - 2 comments
Labels: potential bug, core model

#62 - cb_iso

Issue - State: closed - Opened by kenatcampbellmusclelab over 3 years ago - 2 comments
Labels: potential bug, needs clarification

#61 - 3 groups modeling

Pull Request - State: closed - Opened by kenatcampbellmusclelab over 3 years ago

#60 - 3 groups modeling

Pull Request - State: closed - Opened by kenatcampbellmusclelab over 3 years ago

#59 - demos fitting pCa_curve_single

Issue - State: closed - Opened by kenatcampbellmusclelab over 3 years ago - 1 comment
Labels: bug

#58 - Fitting modules need openpyxl package to read Excel files

Issue - State: closed - Opened by kenatcampbellmusclelab over 3 years ago - 1 comment
Labels: bug

#57 - Demo fitting single-pCa curve crashes

Issue - State: closed - Opened by kenatcampbellmusclelab over 3 years ago - 1 comment
Labels: bug

#56 - Add support for multiple half-sarcomeres in series

Issue - State: closed - Opened by kenatcampbellmusclelab almost 4 years ago
Labels: enhancement

#55 - Add 3D spatial description

Issue - State: closed - Opened by Sarah-Kst almost 4 years ago
Labels: enhancement

#54 - Add Sarah's webinar video to FiberSim documentation

Issue - State: closed - Opened by Sarah-Kst almost 4 years ago - 1 comment
Labels: documentation

#53 - Spatio-temporal variation in Ca

Issue - State: closed - Opened by kenatcampbellmusclelab almost 4 years ago
Labels: enhancement

#52 - Rate description for force-dependent recruitment

Issue - State: closed - Opened by Sarah-Kst about 4 years ago - 1 comment
Labels: core model

#51 - Improve FiberCpp computational time

Issue - State: closed - Opened by Sarah-Kst about 4 years ago - 3 comments
Labels: enhancement, core model

#50 - Latex functionality down

Issue - State: closed - Opened by kenatcampbellmusclelab about 4 years ago - 2 comments
Labels: documentation, minor

#49 - Simplify documentation

Issue - State: closed - Opened by kenatcampbellmusclelab about 4 years ago - 1 comment
Labels: documentation, minor

#48 - "Multithreading" and "n° of repeats" are outdated parameters ?

Issue - State: closed - Opened by Sarah-Kst over 4 years ago - 2 comments
Labels: question

#47 - FiberSim docs seem corrupted?

Issue - State: closed - Opened by kenatcampbellmusclelab over 4 years ago - 1 comment
Labels: documentation

#46 - Can't find distribution in environment.yml

Issue - State: closed - Opened by kenatcampbellmusclelab over 4 years ago - 2 comments

#45 - Include source files for images in doc folders?

Issue - State: closed - Opened by kenatcampbellmusclelab over 4 years ago - 5 comments
Labels: documentation

#44 - Need writeup for installing Blender

Issue - State: closed - Opened by dcolli23 over 4 years ago - 1 comment
Labels: documentation

#43 - Demos - Getting started - Multiple run

Issue - State: closed - Opened by kenatcampbellmusclelab over 4 years ago - 1 comment

#42 - Switching to FiberPy

Issue - State: closed - Opened by kenatcampbellmusclelab over 4 years ago - 3 comments

#41 - Building the FiberSim project with Visual Studio

Issue - State: closed - Opened by Sarah-Kst over 4 years ago - 3 comments

#40 - Installing and updating environments

Issue - State: closed - Opened by kenatcampbellmusclelab over 4 years ago - 2 comments

#39 - Link to view Doxygen-generated documentation is broken

Issue - State: closed - Opened by dcolli23 over 4 years ago
Labels: bug, documentation

#38 - FiberSim executable file path is hard coded in batch.py

Issue - State: closed - Opened by dcolli23 over 4 years ago - 2 comments
Labels: enhancement

#37 - Potential bug in cross-bridge binding

Issue - State: closed - Opened by dcolli23 over 4 years ago - 4 comments
Labels: potential bug

#37 - Potential bug in cross-bridge binding

Issue - State: closed - Opened by dcolli23 over 4 years ago - 4 comments
Labels: potential bug

#36 - C-protein angle offset is smaller than specified

Issue - State: closed - Opened by dcolli23 over 4 years ago - 1 comment
Labels: bug, visualization

#35 - Bare zone is drawn incorrectly

Issue - State: closed - Opened by dcolli23 over 4 years ago - 1 comment
Labels: bug, visualization

#34 - Cross-bridge attachment-detachment transition is too dramatic

Issue - State: closed - Opened by dcolli23 over 4 years ago
Labels: visualization

#33 - Investigate issue with thick filament spring not moving in Star Wars animation

Issue - State: closed - Opened by dcolli23 over 4 years ago - 1 comment
Labels: bug, visualization

#32 - Add simple check for camera array in top-level JSON

Issue - State: closed - Opened by dcolli23 over 4 years ago - 1 comment
Labels: visualization

#32 - Add simple check for camera array in top-level JSON

Issue - State: closed - Opened by dcolli23 over 4 years ago - 1 comment
Labels: visualization

#31 - Specify Blender file path in the top-level JSON file

Issue - State: closed - Opened by dcolli23 over 4 years ago
Labels: visualization

#30 - All instruction parameter checking should be done in the visualization wrapper

Issue - State: closed - Opened by dcolli23 over 4 years ago - 2 comments
Labels: visualization

#29 - Get rid of "linear_camera_movement" option in visualization instruction file

Issue - State: closed - Opened by dcolli23 over 4 years ago
Labels: visualization

#28 - Setup GitHub Pages in this Repository

Issue - State: closed - Opened by dcolli23 over 4 years ago - 1 comment
Labels: documentation, enhancement

#27 - Incorporate Angle Factor into Transition Validation

Issue - State: closed - Opened by dcolli23 over 4 years ago - 2 comments
Labels: bug, validation

#26 - Investigate why there is a gap between 0 and -0.5 nanometers for the transition validation

Issue - State: closed - Opened by dcolli23 over 4 years ago - 4 comments
Labels: potential bug, validation

#25 - Add Conditional for Calculation of Stretch for Bound Cross-bridges in half_sarcomere::myosin_kinetics()

Issue - State: closed - Opened by dcolli23 over 4 years ago - 5 comments
Labels: potential bug, core model

#24 - Implement Wrapper for Visualization Pipeline

Issue - State: closed - Opened by dcolli23 over 4 years ago
Labels: enhancement, visualization

#23 - Add Camera "Look at" Point for Calculating Camera Alignment

Issue - State: closed - Opened by dcolli23 over 4 years ago - 2 comments
Labels: enhancement, wontfix, visualization

#22 - Incorporate C-protein Offset in Core Model

Issue - State: closed - Opened by dcolli23 over 4 years ago - 1 comment
Labels: enhancement, core model

#21 - Temporarily Offset C-Protein for Star Wars Animation

Issue - State: closed - Opened by dcolli23 over 4 years ago - 2 comments
Labels: bug, visualization

#20 - Write a test to produce cross-bridge stretch histograms

Issue - State: closed - Opened by dcolli23 over 4 years ago - 1 comment
Labels: seasoning, validation

#19 - Develop C-protein transition rate validation

Issue - State: closed - Opened by dcolli23 over 4 years ago - 1 comment
Labels: validation

#18 - Develop cross-bridge transition rate validation

Issue - State: closed - Opened by dcolli23 over 4 years ago - 4 comments
Labels: validation

#17 - Test the dumped force equals the averaged force across the thick filaments

Issue - State: closed - Opened by dcolli23 over 4 years ago - 2 comments
Labels: validation

#16 - Cross-bridge extension not currently incorporated into visualization

Issue - State: closed - Opened by dcolli23 over 4 years ago
Labels: bug, visualization

#15 - Biochemical visualization

Issue - State: closed - Opened by dcolli23 almost 5 years ago
Labels: enhancement, seasoning, visualization

#14 - Add support for visualization of C-protein phosphorylation state

Issue - State: closed - Opened by dcolli23 almost 5 years ago
Labels: enhancement, visualization

#13 - Titin offset not incorporated into visualization

Issue - State: closed - Opened by dcolli23 almost 5 years ago - 1 comment
Labels: bug

#12 - Produce "Star Wars-like" visualization

Issue - State: closed - Opened by dcolli23 over 4 years ago - 3 comments
Labels: visualization

#11 - Actin filament "bound_to_m_type" array incorrectly indexed in half_sarcomere::handle_lattice_event function

Issue - State: closed - Opened by dcolli23 over 4 years ago - 1 comment
Labels: core model

#10 - Extensions of cross-bridges bound to actin filament 0 are not encorporated

Issue - State: closed - Opened by dcolli23 over 4 years ago - 2 comments
Labels: potential bug, core model

#9 - Titin attachment

Issue - State: closed - Opened by kenatcampbellmusclelab almost 5 years ago - 2 comments
Labels: core model

#8 - Filament y - z calculation has to be generalized

Issue - State: closed - Opened by kenatcampbellmusclelab almost 5 years ago - 2 comments
Labels: core model

#7 - Reworking x vector solve

Issue - State: closed - Opened by kenatcampbellmusclelab almost 5 years ago - 2 comments
Labels: core model