Ecosyste.ms: Issues

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GitHub / CamDavidsonPilon/lifelines issues and pull requests

#1637 - Survival function for Cox Time Varying model

Pull Request - State: open - Opened by rvdinter 12 days ago - 3 comments

#1634 - What does 'y' stands for in the AFT model?

Issue - State: open - Opened by shi-ang 18 days ago

#1633 - Fix link statistical test for survival analysis

Pull Request - State: closed - Opened by deril2605 24 days ago - 1 comment

#1632 - scipy.integrate.trapz is deprecated from SciPy 1.14.0

Issue - State: closed - Opened by skjongithub about 1 month ago - 1 comment

#1631 - Stratified K-fold CV

Issue - State: open - Opened by anbai106 about 1 month ago

#1629 - Not compatible w/ Numpy >= 1.26 (venv Python 3.12)

Issue - State: closed - Opened by PavelRechkalov about 2 months ago - 1 comment

#1627 - [Feature Request] ONNX Export

Issue - State: open - Opened by ogencoglu about 2 months ago - 2 comments
Labels: enhancement

#1624 - at_risk_counts results as arrays or dataframe instead of under plot?

Issue - State: open - Opened by ayadasan 3 months ago - 2 comments
Labels: enhancement, plotting

#1622 - Typo in documentation code snippet

Issue - State: open - Opened by evanrubel 3 months ago
Labels: docs

#1621 - bump to 0.29.0; bump scipy and pandas dependencies

Pull Request - State: closed - Opened by CamDavidsonPilon 3 months ago

#1620 - Changing `trapz` to `trapezoid` for scipy 1.14.0.

Pull Request - State: closed - Opened by asarigun 3 months ago - 8 comments

#1619 - Compatibility with numpy 2.0

Issue - State: open - Opened by Zethson 4 months ago - 3 comments

#1616 - Relation to hazardous by probabl - is that a copycat project?

Issue - State: closed - Opened by fkiraly 4 months ago - 1 comment

#1615 - successor library for autograd?

Issue - State: open - Opened by CamDavidsonPilon 4 months ago - 7 comments
Labels: installation, Help wanted

#1612 - FutureWarning in utils/__init__.py

Issue - State: closed - Opened by andyp05 5 months ago

#1611 - Manually setting parameters

Issue - State: open - Opened by Biorrith 5 months ago

#1609 - Using age as 'timescale' for Cox Model in lifelines?

Issue - State: closed - Opened by dcstang 5 months ago - 1 comment

#1608 - x% confidence interval?

Issue - State: closed - Opened by miretchin 5 months ago - 2 comments

#1606 - [BUG] `AalenAdditive` regressor predicts improper survival function

Issue - State: open - Opened by fkiraly 6 months ago - 5 comments

#1604 - Handling of observations with birth_time==death_time

Issue - State: open - Opened by user799595 6 months ago - 1 comment
Labels: bug

#1598 - `robust` is ignored when `cluster_col` is set

Issue - State: open - Opened by benslack19 7 months ago

#1596 - address pandas deprecation warning

Pull Request - State: closed - Opened by mathematicalmichael 8 months ago

#1593 - Plotting KM Survival Functions not working

Issue - State: closed - Opened by jcursons 8 months ago - 6 comments

#1592 - Hazard rates (dividing by timedelta, censored times)

Issue - State: open - Opened by shilet 8 months ago

#1591 - Fix: Typos

Pull Request - State: closed - Opened by FBruzzesi 9 months ago - 1 comment

#1590 - 0.28.0

Pull Request - State: closed - Opened by CamDavidsonPilon 9 months ago

#1589 - Add option to suppress __repr__ when fitting

Issue - State: open - Opened by vunh16 9 months ago - 1 comment

#1585 - Overflow with large numbers in Nelson Aalen fitter

Issue - State: closed - Opened by shilet 10 months ago - 7 comments

#1582 - Obtain log-likelihood given parameters

Issue - State: closed - Opened by melodiemonod 10 months ago - 3 comments

#1576 - Add throw_on_fail setting to check_assumptions

Pull Request - State: closed - Opened by Pearcekieser 11 months ago - 3 comments

#1575 - switch confidence interval values

Pull Request - State: closed - Opened by TheooJ 11 months ago - 1 comment

#1574 - Fix confidence_interval_cumulative_density_

Issue - State: closed - Opened by TheooJ 11 months ago

#1573 - Typo in docs

Issue - State: closed - Opened by Duane321 11 months ago

#1572 - Counting Process Parametric Fitter

Issue - State: open - Opened by RubyT336 11 months ago

#1571 - Issue : 1570 | Updated documentation for CoxPH Fitter

Pull Request - State: closed - Opened by HimanshuBajpai869 11 months ago - 1 comment

#1567 - get Cox results (p-value, confidence interval, etc)

Issue - State: closed - Opened by aster94 11 months ago - 3 comments

#1563 - doc: fix typos

Pull Request - State: closed - Opened by he7d3r almost 1 year ago - 1 comment

#1562 - weibull_aft.plot_survival_function: object has no attribute

Issue - State: open - Opened by timscorbett about 1 year ago - 15 comments

#1561 - AttributeError: module 'formulaic' has no attribute 'ModelSpec'

Issue - State: closed - Opened by timscorbett about 1 year ago - 3 comments

#1557 - Deprecation of pkg_resources in Python 3.11

Issue - State: closed - Opened by shaunporwal about 1 year ago - 1 comment

#1556 - Overlapping 'at risk' counts in Kaplan-Meier plot for multiple dataframes

Issue - State: closed - Opened by Aniket99coder about 1 year ago - 3 comments

#1554 - confidence_interval_survival_function_ at specific times

Issue - State: open - Opened by prikosms about 1 year ago

#1552 - KaplanMeierFitter `label` class attribute is not inherited

Issue - State: closed - Opened by CatChenal about 1 year ago - 2 comments

#1549 - Median and quantiles not correct for AalenJohansen

Issue - State: open - Opened by evannemartin about 1 year ago

#1547 - Fixed example and reproducibility for Log-likelihood

Pull Request - State: closed - Opened by Genarito about 1 year ago

#1546 - unable to load a saved `WeibullAFTFitter` model

Issue - State: open - Opened by deven-gqc about 1 year ago - 1 comment

#1545 - Log likelihood needs to be maximized or minimized?

Issue - State: closed - Opened by Genarito about 1 year ago - 8 comments

#1544 - Possible to reduce CoxPHFitter pickled model size?

Issue - State: closed - Opened by maoserr about 1 year ago - 4 comments

#1543 - [Doc] edit doc for survival_difference_at_fixed_point_in_time_test

Pull Request - State: closed - Opened by DanBasson about 1 year ago - 3 comments

#1542 - Error when predicting single row df with sklearn_adapter

Issue - State: closed - Opened by HansWeda about 1 year ago

#1535 - All CPH Coefficients are 0

Issue - State: open - Opened by Tejussurendran over 1 year ago

#1534 - expose r_precision parameter in Newton raphson solvers, correct typos

Pull Request - State: closed - Opened by mathurinm over 1 year ago - 2 comments

#1533 - Add a test to reproduce #1532 and a fix

Pull Request - State: closed - Opened by AlexandreAbraham over 1 year ago - 1 comment

#1531 - ENH improve speed of fitting Cox model by relying on the fast skglm solver

Issue - State: open - Opened by mathurinm over 1 year ago - 6 comments

#1529 - Feature selection method

Issue - State: open - Opened by AmericaBG over 1 year ago

#1528 - ENH use scientific number formatting for delta and newton decrement in Cox fitters

Pull Request - State: closed - Opened by mathurinm over 1 year ago - 2 comments

#1526 - includes RMST, difference in RMST and confidence intervals

Pull Request - State: open - Opened by bayesfactor over 1 year ago - 10 comments

#1525 - CI Table Not Outputting For All Classes In Column

Issue - State: closed - Opened by sapaca over 1 year ago - 2 comments

#1524 - Fix Aalen-Johansen plotting method when `calculate_variance=False`

Pull Request - State: closed - Opened by Vincent-Maladiere over 1 year ago - 1 comment

#1520 - Why use X_norm instead of X directly?

Issue - State: open - Opened by GaoJiannn over 1 year ago

#1519 - Update Docs (Proportional hazard assumption.ipynb)

Pull Request - State: closed - Opened by nomennominatur over 1 year ago - 2 comments

#1518 - ensure plotting in check_assumptions (file mixins.py)

Pull Request - State: closed - Opened by nomennominatur over 1 year ago - 2 comments

#1517 - `import lifelines` errors with `SyntaxError` in Python 3.7

Issue - State: closed - Opened by DrShushen over 1 year ago - 3 comments

#1516 - fix datetime_is_numeric problem with pandas >= 2.0.0

Pull Request - State: closed - Opened by jonathan-taylor over 1 year ago - 1 comment

#1515 - CoxPHFitter has no attribute 'predict_hazard'

Issue - State: closed - Opened by rajagopaljeeva over 1 year ago - 1 comment

#1514 - cph.check_assumptions not showing plots despite specified?

Issue - State: closed - Opened by nomennominatur over 1 year ago - 8 comments

#1512 - Compatibility issue with pandas 2.0.0

Issue - State: closed - Opened by DrShushen over 1 year ago - 4 comments

#1511 - event column for sklearn predict?

Issue - State: closed - Opened by dpellow over 1 year ago

#1508 - DOC: fixing a typo in conditional_after document

Pull Request - State: closed - Opened by Unessam over 1 year ago - 2 comments

#1507 - How to label censored data on survival curves

Issue - State: closed - Opened by realHongYuZhou over 1 year ago - 2 comments

#1506 - Is there Hazard Function in lifelines ?

Issue - State: closed - Opened by DaniBre99 over 1 year ago - 4 comments

#1505 - Cox Regression with a categorical variable

Issue - State: open - Opened by anyang-kevin over 1 year ago - 11 comments

#1500 - Remove `print` from error path

Issue - State: closed - Opened by CamDavidsonPilon over 1 year ago
Labels: better error handling, next minor release 🤞

#1499 - adding explanation to survival_difference_at_fixed_point_in_time_test

Pull Request - State: closed - Opened by Unessam over 1 year ago - 1 comment