COSIMA/regional-mom6 issues and pull requests

#196 - Processor layout

Issue - State: open - Opened by helenmacdonald about 1 month ago - 1 comment

#194 - tidy_bathymetry fills channels when fill_channels=False

Issue - State: open - Opened by aekiss about 1 month ago

#193 - Version 1.0: North Atlantic Update - Tides, Curved Boundaries, Config, and More!😀🤯🥳

Pull Request - State: open - Opened by manishvenu about 1 month ago - 7 comments
Labels: enhancement

#192 - Add python 3.11 in the CI test suite

Pull Request - State: closed - Opened by navidcy about 2 months ago - 1 comment
Labels: testing 🧪

#191 - xarray v2024.09.0 breaks tests

Issue - State: closed - Opened by navidcy about 2 months ago

#190 - Freeze xarray version given update causes crash

Pull Request - State: closed - Opened by ashjbarnes about 2 months ago - 6 comments

#189 - get_grid_sizerequested tile index 1 is out of bounds (1:0) when running model config produced with regional-mom6

Issue - State: closed - Opened by croachutas 3 months ago - 5 comments

#187 - Better citation info in Docs

Pull Request - State: closed - Opened by navidcy 3 months ago
Labels: documentation 📔

#186 - Tidy MOM_override file

Pull Request - State: closed - Opened by ashjbarnes 3 months ago - 1 comment

#185 - included a min_depth parameter and overwite this in MOM_input

Pull Request - State: closed - Opened by ashjbarnes 3 months ago

#184 - Need to override MOM6 min depth based on value set in `setup_bathymetry` function

Issue - State: open - Opened by ashjbarnes 3 months ago

#183 - Add some diagnostic plots + enhance phrasing in Demo notebook

Pull Request - State: open - Opened by navidcy 3 months ago - 6 comments

#182 - Add link in the Docs pointing to the COSIMA recipe that uses the package

Pull Request - State: closed - Opened by navidcy 3 months ago
Labels: documentation 📔

#181 - Add link to COSIMA recipe example with regional-mom6

Issue - State: closed - Opened by navidcy 3 months ago
Labels: documentation 📔

#180 - added glorys download functions with new API

Pull Request - State: closed - Opened by ashjbarnes 3 months ago - 4 comments
Labels: user experience 📻

#179 - Make setup rundir more robust take #2

Pull Request - State: closed - Opened by ashjbarnes 5 months ago - 3 comments

#178 - Pin numpy<2.0.0

Pull Request - State: closed - Opened by angus-g 5 months ago - 5 comments

#177 - Make setup rundir more robust

Pull Request - State: closed - Opened by ashjbarnes 6 months ago - 22 comments
Labels: package 📦

#176 - Fixes K->C conversion in `initial_condition`

Pull Request - State: closed - Opened by navidcy 6 months ago - 16 comments
Labels: bug 🐞

#175 - (v0.6.0) Simplify boundary condition construction

Pull Request - State: closed - Opened by navidcy 7 months ago - 7 comments
Labels: user experience 📻

#174 - Iterate through boundaries as part of `expt.initial_condition` method

Issue - State: closed - Opened by navidcy 7 months ago - 7 comments
Labels: enhancement, user experience 📻

#173 - add explicity bathymetry.nc to MOM_input

Pull Request - State: closed - Opened by ashjbarnes 7 months ago - 1 comment

#172 - Need to provide `TOPO_FILE` arg in `MOM_input` otherwise MOM6 looks for bathymetry in `topog.nc`

Issue - State: closed - Opened by AVEllepola 7 months ago - 6 comments
Labels: bug 🐞

#171 - Issues with ERA5 specific humidity and surface pressure computation

Issue - State: open - Opened by navidcy 7 months ago - 1 comment
Labels: documentation 📔

#170 - Era5 fix. Typo, and need to combine years into single file again

Pull Request - State: closed - Opened by ashjbarnes 7 months ago - 3 comments
Labels: bug 🐞

#169 - Add JOSS badge

Pull Request - State: closed - Opened by navidcy 7 months ago
Labels: documentation 📔, joss 📓

#168 - `setup_bathymetry` hangs on simple domain

Issue - State: open - Opened by ashjbarnes 7 months ago - 12 comments
Labels: question ❓

#167 - fix regional-mom6 link in docs/index.rst

Pull Request - State: closed - Opened by aekiss 7 months ago - 2 comments
Labels: documentation 📔

#166 - Babushka-doll directory structure 🐣

Issue - State: open - Opened by navidcy 7 months ago - 1 comment
Labels: question ❓, testing 🧪

#165 - `experiment.bathymetry` seems to have a vertical coordinate (weird?) and does not have horizontal coordinates

Issue - State: open - Opened by navidcy 7 months ago - 3 comments
Labels: enhancement, question ❓, user experience 📻

#164 - Fix error msgs related to initial condition + add tests for ValueErrors

Pull Request - State: closed - Opened by navidcy 7 months ago - 5 comments
Labels: testing 🧪, user experience 📻

#163 - Avoid singling out one contributor

Pull Request - State: closed - Opened by navidcy 7 months ago - 1 comment
Labels: package 📦

#162 - Delete ACCESS-OM2 example

Pull Request - State: closed - Opened by navidcy 7 months ago - 1 comment
Labels: documentation 📔

#161 - Fix minor bugs in kwargs default values in `setup_bathymetry`

Pull Request - State: closed - Opened by ashjbarnes 7 months ago - 1 comment
Labels: bug 🐞

#160 - Mostly ERA5-GLORYS demo notebook tweaks

Pull Request - State: closed - Opened by aekiss 7 months ago - 5 comments
Labels: documentation 📔

#159 - Few notebook fixes

Pull Request - State: closed - Opened by navidcy 7 months ago - 1 comment
Labels: documentation 📔

#158 - Tweak API docstrings/comments

Pull Request - State: closed - Opened by aekiss 7 months ago - 2 comments
Labels: documentation 📔

#157 - Docs edits

Pull Request - State: closed - Opened by navidcy 7 months ago - 1 comment
Labels: documentation 📔

#156 - Show bathymetry plot in notebook + some other fixes

Pull Request - State: closed - Opened by navidcy 7 months ago - 7 comments
Labels: documentation 📔

#155 - doc edits attempt 2

Pull Request - State: closed - Opened by aekiss 7 months ago
Labels: ⚠️ DO NOT MERGE ⚠️

#154 - doc edits

Pull Request - State: closed - Opened by aekiss 7 months ago - 4 comments
Labels: documentation 📔

#153 - Minor rephrase/format in the installation instructions

Pull Request - State: closed - Opened by navidcy 7 months ago
Labels: documentation 📔

#152 - PyPI doesn't see any "Project description"

Issue - State: closed - Opened by navidcy 7 months ago
Labels: package 📦

#151 - Automatic PyPI upload on GitHub release

Pull Request - State: closed - Opened by angus-g 7 months ago - 8 comments
Labels: package 📦

#150 - Can we eliminate the need for `positive_down` kwarg in `setup_bathymetry` method?

Issue - State: open - Opened by navidcy 7 months ago - 1 comment
Labels: question ❓, user experience 📻

#149 - Add conda-forge and pypi badges + update installation instructions

Pull Request - State: closed - Opened by navidcy 7 months ago - 7 comments
Labels: documentation 📔, package 📦, joss 📓

#148 - Add intro in Docs + include a "MOM6 file structure primer" section

Pull Request - State: closed - Opened by ashjbarnes 7 months ago - 18 comments
Labels: documentation 📔, joss 📓

#147 - (0.5.0) Better `experiment.bathymetry` method

Pull Request - State: closed - Opened by navidcy 8 months ago - 14 comments
Labels: documentation 📔, user experience 📻

#146 - Explain (via docs) or enhance (via type of args/kwargs) the input required for various methods

Issue - State: closed - Opened by navidcy 8 months ago - 7 comments

#145 - Explicitly explain each output (aka MOM6 input) file

Issue - State: closed - Opened by ashjbarnes 8 months ago
Labels: documentation 📔

#144 - JOSS paper edits/comments by Chris

Pull Request - State: closed - Opened by ashjbarnes 8 months ago - 7 comments
Labels: joss 📓

#143 - Paper cc

Pull Request - State: closed - Opened by ChrisC28 8 months ago - 2 comments

#142 - Fixes for demos

Pull Request - State: closed - Opened by navidcy 8 months ago - 3 comments

#141 - AK edits to paper

Pull Request - State: closed - Opened by aekiss 8 months ago - 6 comments

#140 - Adds interactive domain selection via a map in the ACCESS-OM2 demo

Pull Request - State: open - Opened by reillyja 8 months ago - 7 comments
Labels: user experience 📻

#139 - Remove tide-related methods until proper tidal forcing implementation

Pull Request - State: closed - Opened by navidcy 8 months ago
Labels: cleanup 🧹

#138 - Remove tide-related methods until tides are actually supported

Issue - State: closed - Opened by navidcy 8 months ago - 1 comment
Labels: question ❓, cleanup 🧹

#137 - Further enhance/clarify `setup_run_directory`

Pull Request - State: closed - Opened by navidcy 8 months ago
Labels: documentation 📔, user experience 📻

#136 - Minor changes to readme

Pull Request - State: closed - Opened by dhruvbhagtani 8 months ago - 3 comments
Labels: documentation 📔

#135 - Change default arg from False to None in the setup run dir

Pull Request - State: closed - Opened by ashjbarnes 8 months ago

#134 - `setup_run_directory` includes arguments that are either boolean or strings

Issue - State: closed - Opened by navidcy 8 months ago - 1 comment

#133 - Use verbosely-silly names when creating data arrays for tests

Pull Request - State: closed - Opened by navidcy 8 months ago

#132 - Remove buffer from longitude slicer

Pull Request - State: closed - Opened by ashjbarnes 8 months ago - 2 comments

#131 - Load input using `cosima_cookbook`

Issue - State: closed - Opened by navidcy 8 months ago - 3 comments
Labels: question ❓

#130 - Fix test

Pull Request - State: closed - Opened by navidcy 8 months ago

#129 - Bug in `longitude_slider`

Issue - State: closed - Opened by navidcy 9 months ago
Labels: bug 🐞

#128 - Better docstring rendering

Pull Request - State: closed - Opened by navidcy 9 months ago
Labels: documentation 📔

#127 - Ensure assumptions are met in `rectangular_hgrid`

Pull Request - State: closed - Opened by navidcy 9 months ago
Labels: testing 🧪

#126 - Delete deprecated `motu_requests`

Pull Request - State: closed - Opened by navidcy 9 months ago
Labels: cleanup 🧹

#125 - Fix bug + test assertion error in `longitude_slicer`

Pull Request - State: closed - Opened by navidcy 9 months ago
Labels: bug 🐞, testing 🧪

#124 - Fix typo

Pull Request - State: closed - Opened by navidcy 9 months ago
Labels: cleanup 🧹

#123 - Tolerence of 1e-14 for even spacing too strict

Pull Request - State: closed - Opened by ashjbarnes 9 months ago - 4 comments
Labels: bug 🐞, cleanup 🧹

#122 - Resolved a few errors in the example notebook

Pull Request - State: closed - Opened by dhruvbhagtani 9 months ago - 9 comments
Labels: bug 🐞

#121 - Is `buffer` implicitly assumed to be an `int`?

Issue - State: closed - Opened by navidcy 9 months ago - 4 comments
Labels: question ❓

#120 - `motu_requests` docstring does not describe `buffer`

Issue - State: closed - Opened by navidcy 9 months ago - 1 comment
Labels: documentation 📔

#119 - Testing the demo notebooks using the docker image locally

Issue - State: open - Opened by navidcy 9 months ago - 12 comments
Labels: documentation 📔, testing 🧪

#118 - `longitude_slicer` is not being covered by any test

Issue - State: open - Opened by navidcy 9 months ago - 3 comments
Labels: testing 🧪

#116 - Question regarding `slice` vs `nicer_slicer`

Issue - State: closed - Opened by navidcy 9 months ago - 8 comments
Labels: question ❓

#115 - Typo or is it really "quick quick mosaic"?

Issue - State: closed - Opened by navidcy 9 months ago - 1 comment
Labels: question ❓

#114 - `deepness`

Issue - State: closed - Opened by navidcy 9 months ago - 2 comments
Labels: question ❓

#113 - Revise `experiment` construction to utilize keyword arguments to enhance clarity

Pull Request - State: closed - Opened by navidcy 9 months ago - 10 comments
Labels: user experience 📻

#112 - Enhance (and rename) `nicer_slicer` -> `longitude_slicer`

Pull Request - State: closed - Opened by navidcy 9 months ago - 6 comments
Labels: documentation 📔, cleanup 🧹

#111 - Unpin xarray and xesmf

Pull Request - State: closed - Opened by navidcy 9 months ago - 2 comments
Labels: testing 🧪, package 📦

#110 - Proper/better way to tag new releases?

Issue - State: closed - Opened by navidcy 9 months ago - 18 comments
Labels: documentation 📔, package 📦

#109 - Adds some examples in docstrings with doctests + move utility methods in `regional_mom6.utils`

Pull Request - State: closed - Opened by navidcy 9 months ago - 8 comments
Labels: documentation 📔, testing 🧪

#108 - Add `xarray` upper bound to avoid v2024.02.0

Pull Request - State: closed - Opened by navidcy 9 months ago - 9 comments
Labels: bug 🐞, package 📦

#107 - Clean up construction of vertical grid + include surface `zi = 0`

Issue - State: closed - Opened by navidcy 9 months ago - 1 comment
Labels: question ❓, cleanup 🧹

#106 - Clean up the vertical thickness profile generator (`dz_hyperbolictan`) + modify `_make_vgrid` to include `zi = 0`

Pull Request - State: closed - Opened by navidcy 9 months ago - 20 comments
Labels: documentation 📔, cleanup 🧹

#105 - Add python 3.11 in CI

Pull Request - State: closed - Opened by navidcy 9 months ago
Labels: testing 🧪

#104 - Remove unused imports

Pull Request - State: closed - Opened by navidcy 9 months ago - 1 comment
Labels: cleanup 🧹, package 📦

#103 - Some imports are never used?

Issue - State: closed - Opened by navidcy 9 months ago
Labels: question ❓

#102 - Question regarding `ep2ap` and `ap2ep`

Issue - State: closed - Opened by navidcy 9 months ago - 3 comments
Labels: question ❓

#101 - Suggested shortcut for `regional_mom6`

Issue - State: closed - Opened by navidcy 9 months ago - 2 comments
Labels: documentation 📔, question ❓

#100 - JOSS paper

Pull Request - State: closed - Opened by navidcy 9 months ago - 56 comments
Labels: joss 📓

#99 - Some formatting beautifications in demos

Pull Request - State: closed - Opened by navidcy 9 months ago - 17 comments
Labels: documentation 📔

#98 - Fix `_make_hgrid` docstring ambiguity + Enhance format + clarity of various docstrings

Pull Request - State: closed - Opened by navidcy 9 months ago - 11 comments
Labels: documentation 📔

#97 - Reorder doc contents

Pull Request - State: closed - Opened by navidcy 9 months ago
Labels: documentation 📔

#96 - Enhance `reanalysis-forced` notebook

Issue - State: open - Opened by navidcy 9 months ago - 5 comments
Labels: documentation 📔, joss 📓

#95 - Update installation instructions

Pull Request - State: closed - Opened by navidcy 9 months ago - 30 comments
Labels: documentation 📔

#94 - Separate initial condition and boundary

Pull Request - State: closed - Opened by ashjbarnes 9 months ago - 4 comments

GitHub / COSIMA/regional-mom6 issues and pull requests