Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / COMBINE-lab/simpleaf issues and pull requests

#162 - read lengths differ

Issue - State: open - Opened by robertzeibich 17 days ago - 7 comments

#161 - simpleaf index: long runtime | takes too long

Issue - State: open - Opened by robertzeibich 17 days ago - 2 comments

#160 - [feature request] umi-edit-dist parameter

Issue - State: open - Opened by TavorB 19 days ago

#159 - expose piscem workdir parameter `-w` for simpleaf index

Pull Request - State: closed - Opened by DongzeHE about 2 months ago

#158 - [feature request] 10x chemistry autodetection

Issue - State: open - Opened by rob-p 3 months ago - 3 comments
Labels: enhancement, feature

#157 - sequencing saturation

Issue - State: closed - Opened by wangjiawen2013 3 months ago - 4 comments

#156 - merge dev into main

Pull Request - State: closed - Opened by rob-p 4 months ago

#155 - mege main back into dev

Pull Request - State: closed - Opened by rob-p 4 months ago

#154 - merge dev into main

Pull Request - State: closed - Opened by rob-p 4 months ago

#153 - merge main back into dev.

Pull Request - State: closed - Opened by rob-p 4 months ago

#152 - Update test_simpleaf.yml

Pull Request - State: closed - Opened by rob-p 4 months ago

#151 - Dev

Pull Request - State: closed - Opened by rob-p 4 months ago

#150 - Update test_simpleaf.yml

Pull Request - State: closed - Opened by rob-p 4 months ago

#149 - Update test_simpleaf.yml

Pull Request - State: closed - Opened by rob-p 4 months ago

#148 - Update test_simpleaf.yml

Pull Request - State: closed - Opened by rob-p 4 months ago

#147 - Update test_simpleaf.yml

Pull Request - State: closed - Opened by rob-p 4 months ago

#146 - Update test_simpleaf.yml

Pull Request - State: closed - Opened by rob-p 4 months ago

#145 - Update test_simpleaf.yml

Pull Request - State: closed - Opened by rob-p 4 months ago

#144 - Update test_simpleaf.yml

Pull Request - State: closed - Opened by rob-p 4 months ago

#143 - Update simpleaf_conda_env.yml

Pull Request - State: closed - Opened by rob-p 4 months ago

#142 - Update simpleaf_conda_env.yml

Pull Request - State: closed - Opened by rob-p 4 months ago

#141 - Update test_simpleaf.yml

Pull Request - State: closed - Opened by rob-p 4 months ago

#140 - chore(main): release 0.17.0

Pull Request - State: closed - Opened by github-actions[bot] 4 months ago - 1 comment
Labels: autorelease: tagged

#139 - Dev

Pull Request - State: closed - Opened by rob-p 4 months ago

#138 - Merge main back into dev

Pull Request - State: closed - Opened by rob-p 4 months ago

#137 - Error: invalid base: 0067

Issue - State: open - Opened by holmrenser 5 months ago - 6 comments

#136 - Retaining sample origin information

Issue - State: closed - Opened by pakiessling 6 months ago - 2 comments

#135 - [question]: maximum available parallelism and number of threads

Issue - State: open - Opened by tamuanand 7 months ago - 1 comment

#132 - 0 cells returned

Issue - State: closed - Opened by mousepixels 9 months ago - 4 comments

#131 - 10x genomics FFPE chemistry

Issue - State: open - Opened by wangjiawen2013 9 months ago

#130 - chore(main): release 0.16.2

Pull Request - State: closed - Opened by github-actions[bot] 9 months ago - 1 comment
Labels: autorelease: tagged

#129 - Dev

Pull Request - State: closed - Opened by rob-p 9 months ago

#128 - permit list download failure

Issue - State: closed - Opened by rpolicastro 9 months ago - 8 comments

#127 - Merge main back into dev

Pull Request - State: closed - Opened by rob-p 9 months ago

#125 - chore(main): release 0.16.1

Pull Request - State: closed - Opened by github-actions[bot] 9 months ago - 1 comment
Labels: autorelease: tagged

#124 - fix: update 10xv3 permit list location

Pull Request - State: closed - Opened by rob-p 9 months ago

#123 - fix: add piscem to conda env

Pull Request - State: closed - Opened by rob-p 9 months ago

#122 - chore(main): release 0.16.0

Pull Request - State: closed - Opened by github-actions[bot] 9 months ago - 1 comment
Labels: autorelease: tagged

#121 - Dev

Pull Request - State: closed - Opened by rob-p 9 months ago

#120 - merge main back into dev

Pull Request - State: closed - Opened by rob-p 9 months ago

#118 - consider making piscem a dependency in the simpleaf conda env

Issue - State: closed - Opened by rpolicastro 11 months ago - 5 comments

#117 - chore(main): release 0.15.1

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago - 1 comment
Labels: autorelease: tagged

#116 - Dev

Pull Request - State: closed - Opened by rob-p about 1 year ago

#115 - Cell-by-isoform matrix

Issue - State: open - Opened by sameer-aryal about 1 year ago - 2 comments

#114 - Update .readthedocs.yaml

Pull Request - State: closed - Opened by rob-p about 1 year ago

#113 - Merge main into dev

Pull Request - State: closed - Opened by rob-p about 1 year ago

#112 - chore(main): release 0.15.0

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago - 1 comment
Labels: autorelease: tagged

#111 - Refactor workflow

Pull Request - State: closed - Opened by rob-p about 1 year ago

#110 - Rework workflow implementation

Issue - State: closed - Opened by rob-p about 1 year ago - 2 comments
Labels: enhancement

#109 - Merge main back into dev

Pull Request - State: closed - Opened by rob-p about 1 year ago

#108 - fix: write workflow log when external command fails

Pull Request - State: closed - Opened by DongzeHE about 1 year ago - 2 comments

#106 - Too many obs

Issue - State: closed - Opened by partrita about 1 year ago - 3 comments

#105 - BD data

Issue - State: open - Opened by cathalgking about 1 year ago - 4 comments

#104 - Processing SplitSeq / ParseBio data with simpleaf

Issue - State: open - Opened by wmacnair about 1 year ago - 3 comments

#102 - How to obtain simpleaf previous versions

Issue - State: closed - Opened by sdr08 about 1 year ago - 1 comment

#101 - add tutorial website's link to doc

Pull Request - State: closed - Opened by DongzeHE about 1 year ago

#100 - CHM13 Index

Issue - State: open - Opened by AndrewSkelton over 1 year ago

#99 - "Error: piscem mapping failed with exit status ExitStatus(unix_wait_status(139))"

Issue - State: closed - Opened by wmacnair over 1 year ago - 54 comments

#98 - Issues with indexing concatenated gtf file

Issue - State: closed - Opened by wmacnair over 1 year ago - 4 comments

#97 - chore(main): release 0.14.1

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: autorelease: tagged

#96 - fix: bump roers dependency

Pull Request - State: closed - Opened by rob-p over 1 year ago

#95 - chore(main): release 0.14.0

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: autorelease: tagged

#94 - Dev

Pull Request - State: closed - Opened by rob-p over 1 year ago

#93 - feat: replace pyroe with roers

Pull Request - State: closed - Opened by rob-p over 1 year ago

#91 - numpy has no attribute long

Issue - State: closed - Opened by thisisamirv over 1 year ago - 13 comments

#90 - fix: update Jrsonnet related code for its new version

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#89 - fix: update jrsonnet related code for its new version

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#88 - Using simpleaf quant offline

Issue - State: closed - Opened by jagoor93 over 1 year ago - 2 comments

#87 - Improve workflow utils library doc

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#86 - improve workflow utility library doc

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#85 - merge main back to dev

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#84 - doc: add workflow utility doc

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#83 - merge main back into dev

Pull Request - State: closed - Opened by rob-p over 1 year ago

#82 - chore(main): release 0.13.0

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: autorelease: tagged

#81 - merge dev into main

Pull Request - State: closed - Opened by rob-p over 1 year ago

#80 - simpleaf index issues around pyroe

Issue - State: closed - Opened by rpolicastro over 1 year ago - 19 comments

#79 - feat: improvements simpleaf workflow

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#78 - merge main back into dev

Pull Request - State: closed - Opened by rob-p over 1 year ago

#77 - fix formatting

Pull Request - State: closed - Opened by rob-p over 1 year ago

#76 - merge main back into dev

Pull Request - State: closed - Opened by rob-p over 1 year ago

#75 - chore(main): release 0.12.0

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: autorelease: tagged

#74 - merge dev into main

Pull Request - State: closed - Opened by rob-p over 1 year ago

#73 - feat: adding log for parsing commands

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#72 - feat: improve logging for simpleaf workflow

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#71 - doc: update get-workflow-config command doc

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#70 - chore(main): release 0.11.1

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: autorelease: tagged

#69 - Dev

Pull Request - State: closed - Opened by rob-p over 1 year ago

#68 - merge main into dev

Pull Request - State: closed - Opened by rob-p over 1 year ago

#67 - chore(main): release 0.11.0

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: autorelease: tagged

#66 - fix: toy reference dir in testing dataset

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#65 - fix: toy reference dir in testing dataset

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#64 - merge dev into main

Pull Request - State: closed - Opened by rob-p over 1 year ago - 1 comment

#63 - ci skip : update Readme

Pull Request - State: closed - Opened by rob-p over 1 year ago