Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / COMBINE-lab/pyroe issues and pull requests

#44 - Optional pyranges

Pull Request - State: open - Opened by DongzeHE 8 months ago

#43 - Upgrade pyranges and pandas

Pull Request - State: closed - Opened by DongzeHE 8 months ago

#42 - latest pandas

Issue - State: open - Opened by wangjiawen2013 9 months ago - 5 comments

#41 - Duplicate entries for spliceu index

Issue - State: closed - Opened by davidaknowles about 1 year ago - 12 comments

#40 - fix: fix bug in format detection for id-to-name

Pull Request - State: closed - Opened by rob-p over 1 year ago

#39 - Bug in id-to-name

Issue - State: closed - Opened by zedongL over 1 year ago - 2 comments

#38 - merge develop

Pull Request - State: closed - Opened by DongzeHE over 1 year ago - 1 comment

#37 - fix: fix pyranges version

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#36 - fix: pandas version & subcommand alias

Pull Request - State: closed - Opened by rob-p over 1 year ago

#35 - merge main back into dev

Pull Request - State: closed - Opened by rob-p over 1 year ago

#34 - ci skip: bump version

Pull Request - State: closed - Opened by rob-p over 1 year ago

#33 - Develop

Pull Request - State: closed - Opened by rob-p over 1 year ago

#32 - fix: fix bug in make_splici_txome

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#31 - the pyranges.introns() warning is still there, set warning filter

Pull Request - State: closed - Opened by DongzeHE over 1 year ago - 1 comment

#30 - Merge main back into develop

Pull Request - State: closed - Opened by rob-p over 1 year ago

#29 - more wording for documentation

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#28 - Update documentation

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#27 - merge develop into main

Pull Request - State: closed - Opened by rob-p over 1 year ago

#26 - merge main back into dev

Pull Request - State: closed - Opened by rob-p over 1 year ago

#25 - fix: update minimum pyranges version and exception handling

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#24 - fix: ensure only proper fields are written to bed file

Pull Request - State: closed - Opened by rob-p over 1 year ago

#23 - fix: refine bed file formats

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#22 - Merge develop into master

Pull Request - State: closed - Opened by rob-p over 1 year ago

#21 - Improve GTF parsing

Pull Request - State: closed - Opened by DongzeHE over 1 year ago - 2 comments

#20 - fix: fix bugs in "try except"

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#19 - feat: new predefined output_formats for load_fry function

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#18 - Develop

Pull Request - State: closed - Opened by rob-p over 1 year ago

#17 - Update README.md

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#16 - Merge main back into develop

Pull Request - State: closed - Opened by rob-p over 1 year ago

#15 - add alias for make-splici and make-spliceu

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#14 - Develop

Pull Request - State: closed - Opened by rob-p over 1 year ago

#13 - write test function for make_spliceu

Pull Request - State: closed - Opened by DongzeHE over 1 year ago

#12 - Merge main updates back to dev

Pull Request - State: closed - Opened by rob-p over 1 year ago

#11 - feat: add make_spliceu_txome function and command line tool

Pull Request - State: closed - Opened by DongzeHE over 1 year ago - 3 comments

#10 - Develop

Pull Request - State: closed - Opened by rob-p almost 2 years ago

#9 - fix:correct gene id to name file name

Pull Request - State: closed - Opened by DongzeHE almost 2 years ago

#8 - fix:correct gene id to name file name

Pull Request - State: closed - Opened by DongzeHE almost 2 years ago - 1 comment

#7 - Develop

Pull Request - State: closed - Opened by rob-p almost 2 years ago

#6 - feat:improve robustness

Pull Request - State: closed - Opened by DongzeHE almost 2 years ago

#5 - feat: catch error when PyRanges.read_gtf fails.

Pull Request - State: closed - Opened by DongzeHE almost 2 years ago

#4 - feat:check GTF before processing + write gene_id_to_name.tsv

Pull Request - State: closed - Opened by DongzeHE almost 2 years ago

#3 - fix:check GTF before processing

Pull Request - State: closed - Opened by DongzeHE almost 2 years ago

#2 - Merge develop into main for 0.6.0 release

Pull Request - State: closed - Opened by rob-p over 2 years ago