Ecosyste.ms: Issues

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GitHub / CHESSComputing/ChessAnalysisPipeline issues and pull requests

#126 - refactor: changed scan_numbers to string format

Pull Request - State: closed - Opened by rolfverberg 8 months ago

#125 - refactor: added list_to_string to simplify index lists inputs

Pull Request - State: closed - Opened by rolfverberg 8 months ago

#124 - fix: giwaxs: bugs in single set of q-coords for all thetas

Pull Request - State: closed - Opened by rolfverberg 8 months ago

#123 - fix: giwaxs: use single set of q-coords for all thetas

Pull Request - State: closed - Opened by rolfverberg 8 months ago

#122 - bump: make code compliant with pydantic 2.7.3

Pull Request - State: closed - Opened by rolfverberg 8 months ago

#121 - fix: tomo bug when nans/infs are introduced by normalization

Pull Request - State: closed - Opened by rolfverberg 8 months ago

#120 - feat: Added an initial CHAP GIWAXS workflow

Pull Request - State: closed - Opened by rolfverberg 9 months ago

#119 - merge EDD spring with main

Pull Request - State: closed - Opened by rolfverberg 9 months ago

#118 - refactor: updated the galaxy tomo tools to current CHAP

Pull Request - State: closed - Opened by rolfverberg 10 months ago

#117 - tomo docs update

Pull Request - State: closed - Opened by rolfverberg 11 months ago

#116 - fix: brought the tomo examples up to date

Pull Request - State: closed - Opened by rolfverberg 11 months ago

#115 - Dev rolf edd

Pull Request - State: closed - Opened by rolfverberg 11 months ago

#114 - Add foxden module

Pull Request - State: closed - Opened by vkuznet 11 months ago - 1 comment

#113 - Edd etth calib

Pull Request - State: closed - Opened by rolfverberg 11 months ago

#111 - Previously working EDD map pipeline now fails

Issue - State: closed - Opened by arwoll 12 months ago - 2 comments
Labels: bug

#110 - Tests confirm x MUST == unconstrainted_fit_centers after all

Pull Request - State: closed - Opened by arwoll 12 months ago

#109 - Revert to performing detector-specific E recalibration Ceria Peaks

Pull Request - State: closed - Opened by arwoll 12 months ago

#107 - Request option to set detector config defaults in EDD Calibration

Issue - State: closed - Opened by arwoll 12 months ago - 2 comments

#106 - fix: fixed prominence in auto peak finding Ecalib in EDD

Pull Request - State: closed - Opened by rolfverberg 12 months ago

#105 - Dev rolf edd

Pull Request - State: closed - Opened by rolfverberg 12 months ago

#104 - refactor: Eliminate max_energy_kev

Pull Request - State: closed - Opened by rolfverberg 12 months ago

#103 - First pull request for branch edd-spring2024-woll-dev to edd-spring2024

Pull Request - State: closed - Opened by arwoll 12 months ago - 1 comment

#102 - First Pull Request! And: Ecal plot file name change

Pull Request - State: closed - Opened by arwoll 12 months ago

#101 - Energy Calibration output image files need "detector_name" included.

Issue - State: closed - Opened by arwoll about 1 year ago - 1 comment

#100 - Edd fall2023

Pull Request - State: closed - Opened by rolfverberg about 1 year ago

#99 - add: add colorbar to AnimationProcessor and ImageProcessor

Pull Request - State: closed - Opened by rolfverberg about 1 year ago

#98 - Dev rolf

Pull Request - State: closed - Opened by rolfverberg about 1 year ago

#97 - fix: Implement CHAP version of outputdir in Tomo

Pull Request - State: closed - Opened by rolfverberg about 1 year ago

#96 - fix: overhauled the interactive tomo find center search routine

Pull Request - State: closed - Opened by rolfverberg about 1 year ago

#95 - feat: Added an optional 'par_file' field to class SpecScan

Pull Request - State: closed - Opened by rolfverberg about 1 year ago

#94 - Dev rolf

Pull Request - State: closed - Opened by rolfverberg about 1 year ago

#93 - Dev rolf

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#92 - Use MapReader with SMB-style.par files

Issue - State: open - Opened by keara-soloway over 1 year ago

#91 - TOMO: detector pixels frame of reference

Issue - State: closed - Opened by rolfverberg over 1 year ago
Labels: TOMO

#90 - Dev rolf

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#89 - add: CHAP.version attribute

Pull Request - State: closed - Opened by keara-soloway over 1 year ago

#88 - feat: added redchi and success to EDD nexus fit output results

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#87 - fix: fixed inputdir implementation for common.models.map.SpecConfig

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#86 - Updated EDD items from the issues list

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#85 - fix: fixed bugs found in testing tomo test cases

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#84 - Dev rolf

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#83 - Edd fall2023

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#82 - fix: fixed x,y,z order bugs in CHAP/tomo/processor.py

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#81 - Flexible spec_numbers input in pipeline.yaml

Issue - State: closed - Opened by rolfverberg over 1 year ago - 1 comment
Labels: enhancement

#80 - test: add missing input yaml for tomo example

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#79 - style: Updated or added (missing) docstrings

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#78 - Dev rolf

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#77 - Broken action: "Deploy Sphinx documentation to Pages"

Issue - State: closed - Opened by keara-soloway over 1 year ago - 1 comment
Labels: bug, ci/cd

#76 - Edd fall2023

Pull Request - State: closed - Opened by keara-soloway over 1 year ago

#75 - style: added units to tomo Nexus outputs

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#74 - add: Added FileTreeWriter class and implemented it for tomo sim

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#73 - fix: don't append data with write in MultiplePipelineItem.execute

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#72 - Dev rolf

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#71 - EDD fall 2023

Issue - State: open - Opened by keara-soloway over 1 year ago - 9 comments
Labels: EDD

#70 - Dev rolf

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#69 - Fit multipeak

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#68 - add MapReader, update MapConfig

Pull Request - State: closed - Opened by keara-soloway over 1 year ago

#67 - refactor: cleanup tomo and scanparser to use smb_pars and columns

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#66 - Dev rolf

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#65 - feat: move run options from CLI to config file

Pull Request - State: closed - Opened by keara-soloway over 1 year ago

#64 - build: restrict pydantic version to < 2.0

Pull Request - State: closed - Opened by keara-soloway over 1 year ago

#63 - Add configuration pipeline item

Issue - State: closed - Opened by vkuznet over 1 year ago - 2 comments
Labels: enhancement

#61 - conda-forge and galaxy-dev ci/cd

Issue - State: open - Opened by keara-soloway over 1 year ago
Labels: enhancement, ci/cd

#60 - add: new Writer and galaxy tool for Chapbook demo

Pull Request - State: closed - Opened by keara-soloway over 1 year ago

#59 - 31 cicd for galaxy tools

Pull Request - State: closed - Opened by keara-soloway over 1 year ago

#58 - refactor: move CHAP.common.utils to CHAP.utils

Pull Request - State: closed - Opened by keara-soloway over 1 year ago

#57 - Dev rolf

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#56 - refactor: add a PipelineItem.get_config method

Pull Request - State: closed - Opened by keara-soloway over 1 year ago - 1 comment

#55 - RawDetectorDataMapProcessor

Pull Request - State: closed - Opened by keara-soloway over 1 year ago

#54 - CI/CD chores

Pull Request - State: closed - Opened by keara-soloway over 1 year ago

#53 - bump: update saxswaxs reduce galaxy tool

Pull Request - State: closed - Opened by keara-soloway over 1 year ago

#52 - add: tomo_reduce.xml: added manual option to enter detector info

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#51 - Add support for UserProcessor (part of CHAPaaS)

Pull Request - State: closed - Opened by vkuznet over 1 year ago - 1 comment

#50 - doc: fix bugs in documentation source.

Pull Request - State: closed - Opened by keara-soloway over 1 year ago

#49 - Bugs in docs/installation.md

Issue - State: closed - Opened by keara-soloway over 1 year ago
Labels: bug, documentation

#48 - fix: Fixed the Galaxy tools to work with CHAP v0.0.8

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#47 - style: Added/updated docstrings for tomo

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#46 - Update README

Issue - State: closed - Opened by keara-soloway over 1 year ago
Labels: documentation

#45 - link to galaxy tool

Issue - State: open - Opened by rolfverberg over 1 year ago
Labels: enhancement, galaxy

#44 - test: added two tomo examples

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#43 - doc/build: add installation docs. add shebang to setup.py

Pull Request - State: closed - Opened by keara-soloway over 1 year ago

#42 - Refactor Tomo from the NXTomo structure to a MapConfig compatible structure

Issue - State: closed - Opened by rolfverberg over 1 year ago - 1 comment
Labels: TOMO

#41 - Added a tomography simulator for SMB style runs

Pull Request - State: closed - Opened by rolfverberg over 1 year ago

#40 - Add initial Unittests

Pull Request - State: closed - Opened by keara-soloway over 1 year ago

#39 - Relocate CHAP.common.utils

Issue - State: closed - Opened by keara-soloway over 1 year ago
Labels: refactor

#38 - CHAP.version

Issue - State: closed - Opened by keara-soloway almost 2 years ago
Labels: enhancement, ci/cd

#37 - Documentation

Pull Request - State: closed - Opened by keara-soloway almost 2 years ago

#36 - Dev rolf

Pull Request - State: closed - Opened by rolfverberg almost 2 years ago

#35 - Initial example of unit test

Pull Request - State: closed - Opened by vkuznet almost 2 years ago
Labels: ci/cd, unittest

#34 - CHAP.common.StrainAnalysisProcessor

Issue - State: open - Opened by keara-soloway almost 2 years ago
Labels: EDD, sin2psi

#33 - PipelineItem.get_configs

Issue - State: closed - Opened by keara-soloway almost 2 years ago
Labels: refactor

#32 - Galaxy tool tests

Issue - State: open - Opened by keara-soloway almost 2 years ago
Labels: tests, galaxy

#31 - CI/CD for galaxy tools

Issue - State: closed - Opened by keara-soloway almost 2 years ago - 1 comment
Labels: ci/cd, galaxy

#30 - CI/CD for pylint

Issue - State: closed - Opened by keara-soloway almost 2 years ago - 1 comment
Labels: ci/cd

#29 - unit tests

Issue - State: open - Opened by keara-soloway almost 2 years ago - 2 comments
Labels: enhancement, ci/cd, tests

#28 - Changelog

Issue - State: open - Opened by keara-soloway almost 2 years ago

#27 - Docs

Issue - State: open - Opened by keara-soloway almost 2 years ago - 1 comment
Labels: documentation, ci/cd