Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / CEA-COSMIC/pysap-mri issues and pull requests

#177 - CLI scripts

Pull Request - State: closed - Opened by chaithyagr 8 months ago

#176 - update to src layout and cleanup dependencies.

Pull Request - State: closed - Opened by paquiteau 9 months ago - 2 comments

#175 - Fix the current testing pipelines

Issue - State: open - Opened by chaithyagr 9 months ago

#173 - Setup basic reconstruction script without Hydra

Issue - State: open - Opened by chaithyagr 9 months ago

#172 - Making num_check_lips=0

Pull Request - State: closed - Opened by chaithyagr 9 months ago

#171 - Remove the default of 10 for `num_check_lips`

Issue - State: closed - Opened by chaithyagr 9 months ago

#170 - Add a bunch of utils functions for reconstruction

Issue - State: open - Opened by chaithyagr 9 months ago - 2 comments

#169 - Add support functions for IO

Issue - State: closed - Opened by chaithyagr 9 months ago - 1 comment

#167 - Develop

Pull Request - State: closed - Opened by chaithyagr 10 months ago

#166 - Mrinufft

Pull Request - State: closed - Opened by chaithyagr 11 months ago - 3 comments

#165 - Make a new release with documentation build flow

Pull Request - State: closed - Opened by chaithyagr 11 months ago

#164 - Setup a k-space generator with true generator

Issue - State: open - Opened by chaithyagr over 1 year ago

#163 - `convert_locations_to_mask` is broken

Issue - State: closed - Opened by chaithyagr over 1 year ago - 1 comment

#162 - Tests are broken on develop

Issue - State: open - Opened by paquiteau almost 2 years ago
Labels: bug

#161 - Auto threshold

Pull Request - State: closed - Opened by paquiteau almost 2 years ago - 1 comment

#160 - Add support for documentation + Gradien tparameter for modopt

Pull Request - State: closed - Opened by paquiteau almost 2 years ago

#159 - Documentation structure changes

Issue - State: open - Opened by sfarrens over 2 years ago
Labels: documentation

#158 - Final Documentation Pull Request #155

Pull Request - State: closed - Opened by chaithyagr over 2 years ago - 1 comment

#157 - Setup the workflow needed for getting API docs

Pull Request - State: closed - Opened by chaithyagr over 2 years ago - 2 comments

#156 - Aliases in documentation

Issue - State: open - Opened by paquiteau over 2 years ago

#155 - Final Documentation Pull Request

Pull Request - State: closed - Opened by paquiteau over 2 years ago - 1 comment

#154 - Fourier operator base

Pull Request - State: closed - Opened by paquiteau over 2 years ago - 2 comments

#153 - add dtype option for gradient.

Pull Request - State: closed - Opened by paquiteau over 2 years ago - 2 comments

#152 - documentation reconstructors

Pull Request - State: closed - Opened by Zaineb18 over 2 years ago - 4 comments
Labels: documentation

#151 - Clean documentation on gradient operators

Pull Request - State: closed - Opened by Daval-G over 2 years ago - 1 comment
Labels: documentation

#150 - Doc fourier

Pull Request - State: closed - Opened by philouc over 2 years ago - 1 comment
Labels: documentation

#149 - Move from pynfft to nfft

Issue - State: closed - Opened by paquiteau over 2 years ago - 1 comment
Labels: enhancement

#148 - [DOC] Linear Operators

Pull Request - State: closed - Opened by paquiteau over 2 years ago - 1 comment

#147 - revised documentation of Cartesian Fourier operators

Pull Request - State: closed - Opened by philouc over 2 years ago - 2 comments

#146 - Update develop branch

Pull Request - State: closed - Opened by chaithyagr over 2 years ago

#145 - Setup documentation flow

Issue - State: closed - Opened by chaithyagr over 2 years ago - 1 comment

#142 - optimizers and generators: go through and fix documentations

Issue - State: open - Opened by chaithyagr over 2 years ago - 1 comment

#140 - Add support for pygpuNUFFT

Pull Request - State: closed - Opened by paquiteau almost 3 years ago - 1 comment

#139 - Issue during install

Issue - State: closed - Opened by gavins13 almost 3 years ago - 2 comments

#138 - Skip duplicate action runs

Pull Request - State: closed - Opened by chaithyagr almost 3 years ago

#137 - Misuse of numpy.all function in test assertions

Issue - State: open - Opened by Daval-G almost 3 years ago - 1 comment

#136 - Add function to discard kspace locations out-of-bounds, and related tests

Pull Request - State: closed - Opened by Daval-G almost 3 years ago - 1 comment

#135 - add window function support for Smaps estimations.

Pull Request - State: closed - Opened by paquiteau almost 3 years ago - 3 comments

#134 - Optimizer

Pull Request - State: closed - Opened by paquiteau almost 3 years ago - 6 comments

#133 - Generators

Pull Request - State: closed - Opened by paquiteau almost 3 years ago - 2 comments

#132 - Allow fast fail and faster tests

Pull Request - State: closed - Opened by chaithyagr almost 3 years ago - 2 comments

#131 - remove pyNUFFT

Pull Request - State: closed - Opened by paquiteau almost 3 years ago

#130 - Integration of online reconstruction

Pull Request - State: closed - Opened by paquiteau almost 3 years ago - 2 comments
Labels: enhancement, In Progress, Testing

#129 - [TASK][Plugin Merge] Merging `pysap-mri-online` to `pysap-mri`

Issue - State: closed - Opened by chaithyagr almost 3 years ago - 4 comments
Labels: enhancement, In Progress, Testing, CircleCI

#127 - Change CI to github and add fix coverage through codecov

Pull Request - State: closed - Opened by chaithyagr over 3 years ago - 3 comments

#126 - Ci codecov

Pull Request - State: closed - Opened by chaithyagr over 3 years ago

#125 - [BUG] A reconstruct() call alters the sys.stdout

Issue - State: open - Opened by patquem over 3 years ago - 10 comments

#124 - Move to github CI / CD

Issue - State: closed - Opened by chaithyagr over 3 years ago

#123 - Add Weighted Sparse Threshold

Pull Request - State: closed - Opened by chaithyagr over 3 years ago - 10 comments

#122 - Use OWL also for mono-coil reconstruction

Pull Request - State: closed - Opened by paquiteau over 3 years ago - 5 comments

#121 - Fix the #66 issue. This will ensure that we dont enforce sparsity in approximation

Pull Request - State: closed - Opened by chaithyagr over 3 years ago - 1 comment

#120 - Preparing for a release v0.3

Pull Request - State: closed - Opened by chaithyagr over 3 years ago - 5 comments

#119 - Move to using codecov

Issue - State: closed - Opened by chaithyagr over 3 years ago

#118 - Remove examples and remove unwanted imports

Pull Request - State: closed - Opened by chaithyagr over 3 years ago

#117 - CircleCI tests are running for too long

Issue - State: closed - Opened by chaithyagr over 3 years ago - 7 comments
Labels: Travis

#116 - Fix gridsearch script for non cartesian

Pull Request - State: closed - Opened by chaithyagr almost 4 years ago - 2 comments
Labels: bug, In Progress

#115 - B0 correction operator and coefficients

Pull Request - State: closed - Opened by Daval-G almost 4 years ago - 6 comments
Labels: enhancement, In Progress, Testing

#114 - Add oscar scale based proximity

Pull Request - State: closed - Opened by chaithyagr almost 4 years ago - 2 comments
Labels: bug, enhancement

#113 - Fix normalize_frequency_locations

Pull Request - State: closed - Opened by chaithyagr almost 4 years ago - 1 comment

#111 - [SHORT] Fix up codes for FFT class, making it more user friendly and fix grid search

Pull Request - State: closed - Opened by chaithyagr almost 4 years ago - 4 comments

#109 - Add support for density compensation

Pull Request - State: closed - Opened by chaithyagr over 4 years ago - 4 comments

#108 - [ENHANCEMENT] Add support for gpuNUFFT density compensation

Issue - State: closed - Opened by chaithyagr over 4 years ago - 1 comment

#107 - Fix travis based on new pysap flow and add support to python3.8

Pull Request - State: closed - Opened by chaithyagr over 4 years ago - 1 comment

#106 - 'mr_transform' is not executable

Issue - State: closed - Opened by guanhuaw over 4 years ago - 2 comments

#105 - Fix Parallel wavelet run by having a queue of transformers

Pull Request - State: closed - Opened by chaithyagr over 4 years ago - 1 comment

#104 - [BUG] [URGENT] Parallel WaveletN has issues when n_jobs!=1

Issue - State: closed - Opened by chaithyagr over 4 years ago
Labels: bug, In Progress, Testing

#103 - Update OWL to avoid weights overflow with large volumes.

Pull Request - State: closed - Opened by Daval-G over 4 years ago - 1 comment

#102 - silght difference in documentation and code

Issue - State: closed - Opened by akazeykina over 4 years ago - 1 comment

#101 - [BUG] Pickling issue while trying to pickle a linear_op, causing gridsearch to fail

Issue - State: open - Opened by chaithyagr over 4 years ago
Labels: bug, Testing

#100 - Add python 3.8 to travis and maybe remove python 3.5

Issue - State: closed - Opened by chaithyagr over 4 years ago - 4 comments
Labels: Travis

#99 - [SHORT] Pass linear_op to POGM

Pull Request - State: closed - Opened by chaithyagr over 4 years ago - 5 comments

#98 - [Enhancement][BUG] Send Linear operator to POGM so that metrics can be called

Issue - State: closed - Opened by chaithyagr over 4 years ago
Labels: bug, enhancement

#97 - [Enhancement] Improve the Smap estimation process for Self Calibration reconstruction

Issue - State: open - Opened by chaithyagr over 4 years ago - 1 comment
Labels: enhancement

#96 - Add SWI Reconstruction of data from multichannel

Pull Request - State: closed - Opened by mathrip over 4 years ago - 6 comments
Labels: enhancement, In Progress, Testing

#95 - [SMALL] PR for version bump for PyPi Release

Pull Request - State: closed - Opened by chaithyagr over 4 years ago - 4 comments

#94 - changed self calibration gradients op to not use loop

Pull Request - State: closed - Opened by zaccharieramzi over 4 years ago - 1 comment

#93 - Flattening of the wavelet coefficients

Issue - State: open - Opened by zaccharieramzi over 4 years ago - 1 comment

#92 - Add gpu sense recon support from GPUNUFFT

Pull Request - State: closed - Opened by chaithyagr over 4 years ago - 4 comments

#91 - Add support for using SENSE Recon with gpuNUFFT

Issue - State: closed - Opened by chaithyagr over 4 years ago - 2 comments

#90 - Need to update gridding reconstruction for variable stack density

Issue - State: open - Opened by mathrip over 4 years ago - 3 comments

#89 - Fix 3D Gridding

Pull Request - State: closed - Opened by chaithyagr over 4 years ago - 2 comments
Labels: bug

#87 - Add Support for gpuNUFFT

Pull Request - State: closed - Opened by chaithyagr almost 5 years ago - 3 comments

#86 - [SMALL] Add Value Error to bad extraction mode

Pull Request - State: closed - Opened by chaithyagr almost 5 years ago

#85 - Add a Value error is smap+extraction_mode is not macthing

Issue - State: closed - Opened by chaithyagr almost 5 years ago
Labels: good first issue

#84 - Speed up Gridding for Smap Estimation

Issue - State: closed - Opened by chaithyagr almost 5 years ago - 1 comment
Labels: enhancement, good first issue

#83 - [SPLIT][SMALL] Fix cost to work more robustly for primal_dual optimization

Pull Request - State: closed - Opened by chaithyagr almost 5 years ago - 2 comments
Labels: enhancement

#82 - Gridding Stack, add interpolation in z

Pull Request - State: closed - Opened by chaithyagr almost 5 years ago

#81 - Fix Stack3DNFFT for VDS case to interpolate in z direction so that we do not zero fill

Issue - State: closed - Opened by chaithyagr almost 5 years ago - 1 comment
Labels: bug, enhancement, Testing

#79 - Extend SelfCalibrationReconstructor smaps use, add getter and setter

Pull Request - State: closed - Opened by Daval-G almost 5 years ago - 2 comments
Labels: enhancement, In Progress