Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / BuysDB/SingleCellMultiOmics issues and pull requests

#270 - pkg_resources migration

Issue - State: open - Opened by BuysDB about 1 month ago

#269 - How is RC tag defined?

Issue - State: closed - Opened by annahyan 6 months ago - 5 comments

#268 - How is QC tag defined?

Issue - State: closed - Opened by annahyan 6 months ago - 1 comment

#267 - Bam file produced by the nlaIII pipeline can't be viewed by IGV

Issue - State: closed - Opened by annahyan 6 months ago - 5 comments

#266 - Small updates

Pull Request - State: closed - Opened by BuysDB 6 months ago

#265 - Single process counting

Pull Request - State: closed - Opened by BuysDB over 1 year ago

#264 - Vector single thread

Pull Request - State: closed - Opened by BuysDB over 1 year ago

#263 - Mate iter bugfix

Pull Request - State: closed - Opened by BuysDB over 1 year ago

#262 - 2 col bed compat

Pull Request - State: closed - Opened by BuysDB over 1 year ago

#261 - update vasa pipeline

Pull Request - State: closed - Opened by marloes3105 over 1 year ago

#260 - Added compatibility to Single Cell Discoveries fastq header

Pull Request - State: closed - Opened by BuysDB almost 2 years ago

#259 - read_me_file

Issue - State: closed - Opened by superwinkler almost 2 years ago - 1 comment

#258 - Updates 13 9 22

Pull Request - State: closed - Opened by BuysDB about 2 years ago

#257 - Bamtagmultiome blacklist fix

Pull Request - State: closed - Opened by BuysDB about 2 years ago

#256 - Count regions merged

Pull Request - State: closed - Opened by BuysDB about 2 years ago

#255 - bamtagmultiome cannot be run with blacklist

Issue - State: closed - Opened by Peter-Zeller about 2 years ago - 8 comments

#254 - Removes default ChIC segment time limit (from 20 minutes)

Pull Request - State: closed - Opened by BuysDB over 2 years ago

#253 - Fixes and updates june 2022

Pull Request - State: closed - Opened by BuysDB over 2 years ago

#252 - test(tagger): remove unused modules

Pull Request - State: open - Opened by tai271828 over 2 years ago

#251 - Add mini nla test into CI

Pull Request - State: closed - Opened by tai271828 over 2 years ago - 3 comments

#250 - March 2022 update

Pull Request - State: closed - Opened by BuysDB over 2 years ago

#249 - Added xtickfontsize parameter

Pull Request - State: closed - Opened by BuysDB over 2 years ago

#248 - Fix ds

Pull Request - State: closed - Opened by BuysDB over 2 years ago

#247 - bulk_mode

Pull Request - State: closed - Opened by BuysDB almost 3 years ago

#246 - Ttab and docs fix

Pull Request - State: closed - Opened by BuysDB almost 3 years ago

#245 - 18 nov fixes

Pull Request - State: closed - Opened by BuysDB almost 3 years ago

#244 - Update bamtagmultiome.py

Pull Request - State: closed - Opened by J-PTRson about 3 years ago

#243 - Hd lazy load fix

Pull Request - State: closed - Opened by BuysDB about 3 years ago

#242 - Chic single end read support and custom taps contig support

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#241 - Bparse optim

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#240 - 26 05 2021 updates

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#239 - Added bulk-seq support to the bamToCountable.py script

Pull Request - State: closed - Opened by J-PTRson over 3 years ago - 1 comment

#238 - 25 05 2021 updates

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#237 - Large barcode files slow demux.py down

Issue - State: closed - Opened by BuysDB over 3 years ago

#236 - 10x and gz

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#235 - Lda

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#234 - Added some pandas utility functions

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#233 - Demux 10x

Pull Request - State: closed - Opened by marloes3105 over 3 years ago

#232 - Fix fragment size tag value

Issue - State: closed - Opened by BuysDB over 3 years ago

#231 - Added script to generate bw diff

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#230 - Additions

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#229 - Use the right method to guess the reference

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#228 - update

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#227 - Added cmap option and option to disable normalisation

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#226 - Additions

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#224 - Methylation additions

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#223 - Nla nocheckopts

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#222 - Undefined span fix

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#221 - Missing requirements during installation // Wiki-Update

Issue - State: closed - Opened by J-PTRson over 3 years ago - 1 comment

#220 - Changed key value

Pull Request - State: closed - Opened by J-PTRson over 3 years ago

#219 - Adjusted command for count_genes

Pull Request - State: closed - Opened by J-PTRson over 3 years ago

#218 - Asp ttab

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#217 - Npos

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#216 - Fs additions

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#215 - Fs additions

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#214 - demux self compat

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#213 - Demux slurm

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#212 - Velocyto compatibility

Pull Request - State: closed - Opened by BuysDB over 3 years ago

#211 - Add optional argument to pass reference path if the mounting point in…

Pull Request - State: closed - Opened by BuysDB almost 4 years ago

#210 - Update config.json

Pull Request - State: closed - Opened by J-PTRson almost 4 years ago

#209 - 17 12 2020 fixes

Pull Request - State: closed - Opened by BuysDB almost 4 years ago

#208 - Perform sort before writing the tags

Pull Request - State: closed - Opened by BuysDB almost 4 years ago

#207 - Updates 11 12 20

Pull Request - State: closed - Opened by BuysDB almost 4 years ago

#206 - Updates 9 12 20

Pull Request - State: closed - Opened by BuysDB almost 4 years ago

#205 - Updates 3 12 20

Pull Request - State: closed - Opened by BuysDB almost 4 years ago

#204 - Updates 2 12 20

Pull Request - State: closed - Opened by BuysDB almost 4 years ago

#203 - export conversion table

Pull Request - State: closed - Opened by BuysDB almost 4 years ago

#202 - Fs fix

Pull Request - State: closed - Opened by BuysDB almost 4 years ago

#201 - Added proper cutadapt requirement which supports --cores

Pull Request - State: closed - Opened by BuysDB almost 4 years ago

#199 - Bw gen

Pull Request - State: closed - Opened by BuysDB almost 4 years ago

#198 - Updated to vasa

Pull Request - State: closed - Opened by BuysDB almost 4 years ago

#197 - added soft_clip_filter.py to bamProcessing

Pull Request - State: closed - Opened by RubenVanEsch almost 4 years ago

#196 - Updates 28 10

Pull Request - State: closed - Opened by BuysDB almost 4 years ago

#195 - Updates 9 10

Pull Request - State: closed - Opened by BuysDB almost 4 years ago

#194 - Export 4sU conversion dictionaries

Pull Request - State: closed - Opened by BuysDB almost 4 years ago

#193 - Check context bounds

Pull Request - State: closed - Opened by BuysDB almost 4 years ago

#192 - Updates 7 10

Pull Request - State: closed - Opened by BuysDB almost 4 years ago

#191 - Updates 6 10

Pull Request - State: closed - Opened by BuysDB almost 4 years ago

#190 - Updates 2 10 2020

Pull Request - State: closed - Opened by BuysDB almost 4 years ago

#189 - Updates 1 10 2020

Pull Request - State: closed - Opened by BuysDB about 4 years ago

#188 - Do not fatal error when contig is missing in vcf file #187

Pull Request - State: closed - Opened by BuysDB about 4 years ago

#187 - 'invalid contig' crashes bamtagmultiome.py

Issue - State: closed - Opened by marloes3105 about 4 years ago

#186 - Patches 14 9

Pull Request - State: closed - Opened by BuysDB about 4 years ago

#185 - Taps updates and tests

Pull Request - State: closed - Opened by BuysDB about 4 years ago

#184 - Updates 4 9 20

Pull Request - State: closed - Opened by BuysDB about 4 years ago

#183 - BugFix: Remove reference supplied to TAPS

Pull Request - State: closed - Opened by BuysDB about 4 years ago

#182 - Updates 3 9 20

Pull Request - State: closed - Opened by BuysDB about 4 years ago

#181 - method chic_taps does not support --consensus

Issue - State: closed - Opened by cgeisenberger about 4 years ago
Labels: bug

#180 - Updates 2 9 20

Pull Request - State: closed - Opened by BuysDB about 4 years ago

#179 - Raise fatal error when vcf index is missing

Issue - State: closed - Opened by BuysDB about 4 years ago - 1 comment
Labels: enhancement

#178 - Dev 28 8

Pull Request - State: closed - Opened by BuysDB about 4 years ago

#177 - Improvements and patches

Pull Request - State: closed - Opened by BuysDB about 4 years ago

#176 - Methylation: include read depth

Issue - State: closed - Opened by BuysDB about 4 years ago
Labels: enhancement

#170 - Fixes 31 7

Pull Request - State: closed - Opened by BuysDB about 4 years ago

#168 - Bugfixes

Pull Request - State: closed - Opened by BuysDB about 4 years ago

#167 - Cut sites

Pull Request - State: closed - Opened by BuysDB about 4 years ago

#166 - Additions 20 7

Pull Request - State: closed - Opened by BuysDB about 4 years ago

#163 - Count filters

Pull Request - State: closed - Opened by BuysDB about 4 years ago