BrunaLab/HeliconiaDemography issues and pull requests

#99 - Revisions

Pull Request - State: closed - Opened by Aariq about 3 years ago

#98 - Report observational data as percentages, model results as probabilities

Issue - State: closed - Opened by Aariq about 3 years ago

#97 - figure out how to put formatting in table captions

Issue - State: closed - Opened by Aariq about 3 years ago - 1 comment

#96 - Problem in diagnostics for individual-level random effects

Issue - State: closed - Opened by Aariq over 3 years ago - 4 comments
Labels: question

#95 - Figure caption updates

Issue - State: closed - Opened by Aariq over 3 years ago

#94 - `dist` argument isn't working in custom plots

Issue - State: closed - Opened by Aariq over 3 years ago - 1 comment
Labels: bug, high priority

#93 - Correct CIs for smooths?

Issue - State: closed - Opened by Aariq over 3 years ago - 1 comment
Labels: high priority

#92 - Add model validation supplement, include knot choice

Issue - State: closed - Opened by Aariq over 3 years ago - 4 comments
Labels: high priority, reviewer comment

#91 - NAs, "dormancy", and assumed death

Issue - State: closed - Opened by Aariq over 3 years ago - 1 comment
Labels: reviewer comment

#90 - Dormancy and detection, NAs

Issue - State: closed - Opened by Aariq over 3 years ago

#89 - Size/growth confusion

Issue - State: closed - Opened by Aariq over 3 years ago - 1 comment
Labels: reviewer comment

#88 - Resubmission checklist

Issue - State: closed - Opened by Aariq over 3 years ago

#87 - Explanation of model

Issue - State: closed - Opened by Aariq over 3 years ago - 1 comment
Labels: reviewer comment

#86 - Discussion of mechanisms of delay

Issue - State: closed - Opened by Aariq over 3 years ago - 4 comments
Labels: reviewer comment

#85 - Concerns about habitat difference interpretation

Issue - State: closed - Opened by Aariq over 3 years ago - 2 comments
Labels: reviewer comment

#84 - Revise Abstract

Issue - State: closed - Opened by Aariq over 3 years ago
Labels: reviewer comment

#83 - Comments on figures

Issue - State: closed - Opened by Aariq over 3 years ago - 2 comments
Labels: reviewer comment

#82 - Line-specific comments

Issue - State: closed - Opened by Aariq over 3 years ago - 1 comment
Labels: reviewer comment

#81 - Recruitment analysis

Issue - State: closed - Opened by Aariq over 3 years ago - 2 comments
Labels: reviewer comment

#80 - Discuss pros and limitations of DLNM approach more

Issue - State: closed - Opened by Aariq over 3 years ago
Labels: reviewer comment

#79 - Plot raw data more when possible

Issue - State: closed - Opened by Aariq over 3 years ago - 3 comments
Labels: reviewer comment

#78 - Report model fit in some way

Issue - State: closed - Opened by Aariq over 3 years ago - 3 comments
Labels: reviewer comment

#77 - Elaborate on DLNM explanation

Issue - State: closed - Opened by Aariq over 3 years ago
Labels: reviewer comment

#76 - Mechanisms for fragment-climate interaction

Issue - State: closed - Opened by Aariq over 3 years ago
Labels: reviewer comment

#75 - Edit intro/abstract to include extreme wet in addition to drought

Issue - State: closed - Opened by Aariq over 3 years ago
Labels: reviewer comment

#74 - Update Data

Pull Request - State: closed - Opened by Aariq over 3 years ago - 1 comment

#73 - Remove leading NAs

Issue - State: closed - Opened by Aariq over 3 years ago - 2 comments
Labels: low priority

#72 - Update results after new data

Issue - State: closed - Opened by Aariq over 3 years ago - 2 comments
Labels: high priority

#71 - put dashed lines on top layer for SPEI figures

Issue - State: closed - Opened by Aariq over 3 years ago
Labels: low priority

#70 - Submission checklist

Issue - State: closed - Opened by Aariq over 3 years ago - 1 comment

#69 - Emilio edits

Pull Request - State: closed - Opened by Aariq over 3 years ago

#68 - The (no really) final edits

Issue - State: closed - Opened by embruna over 3 years ago - 2 comments

#67 - Remove data from GitHub, point to archived data

Issue - State: closed - Opened by Aariq over 3 years ago - 2 comments

#66 - Revise Abstract

Issue - State: closed - Opened by Aariq over 3 years ago

#65 - 95ci writing

Pull Request - State: closed - Opened by Aariq over 3 years ago - 1 comment

#64 - in .Rmd, use tar_read() to reduce memory usage

Issue - State: closed - Opened by Aariq over 3 years ago

#63 - Hipergator ssh

Pull Request - State: closed - Opened by Aariq over 3 years ago

#62 - Plot with 95%CI overlap

Pull Request - State: closed - Opened by Aariq over 3 years ago - 1 comment

#61 - Write about individual-level random effects

Issue - State: closed - Opened by Aariq over 3 years ago
Labels: manuscript

#60 - Run only heavy-duty targets on cluster

Issue - State: closed - Opened by Aariq over 3 years ago - 2 comments
Labels: low priority

#59 - Use 95% CIs to determine "critical windows"

Issue - State: closed - Opened by Aariq over 3 years ago - 2 comments
Labels: enhancement

#58 - Add Land Acknowledgment

Issue - State: closed - Opened by Aariq over 3 years ago - 4 comments

#57 - Eric edits

Pull Request - State: closed - Opened by Aariq over 3 years ago

#56 - Could differences in smoothness be explained by sample size?

Issue - State: closed - Opened by Aariq over 3 years ago - 1 comment

#55 - Justify why 10ha plots are omitted

Issue - State: closed - Opened by Aariq over 3 years ago

#54 - Change license

Issue - State: closed - Opened by Aariq over 3 years ago
Labels: low priority

#53 - Eric edits

Pull Request - State: closed - Opened by Aariq over 3 years ago

#52 - Change plot panel a to growth?

Issue - State: closed - Opened by Aariq over 3 years ago

#51 - Show size plot as linear predictors

Issue - State: closed - Opened by Aariq over 3 years ago - 1 comment

#50 - Center color scale at 0 for difference plots

Issue - State: closed - Opened by Aariq over 3 years ago

#49 - Add citation for leaf area data to supplemental

Issue - State: closed - Opened by Aariq over 3 years ago - 1 comment

#48 - Supplements

Pull Request - State: closed - Opened by Aariq over 3 years ago

#47 - Maria edits

Pull Request - State: closed - Opened by Aariq over 3 years ago

#46 - Figure 3 legend

Issue - State: closed - Opened by Aariq over 3 years ago

#45 - Figure 2: exploratory data visualization

Issue - State: closed - Opened by Aariq over 3 years ago - 3 comments

#44 - Add random effect of individual

Issue - State: closed - Opened by Aariq over 3 years ago - 4 comments
Labels: enhancement

#43 - Combine SPEI plots

Issue - State: closed - Opened by Aariq over 3 years ago - 1 comment
Labels: medium priority

#42 - Recruitment analysis

Issue - State: closed - Opened by Aariq over 3 years ago - 2 comments
Labels: question

#41 - Font size on figures

Issue - State: closed - Opened by Aariq over 3 years ago

#40 - Eric edits

Pull Request - State: closed - Opened by Aariq over 3 years ago

#39 - SPEI_appendix table doesn't knit to Word

Issue - State: closed - Opened by Aariq over 3 years ago

#38 - Use only models with flowering in previous year co-variate

Issue - State: closed - Opened by Aariq over 3 years ago

#37 - First initial vs. first name: inconsistent in citations

Issue - State: closed - Opened by Aariq over 3 years ago - 1 comment
Labels: low priority

#36 - Appendix justifying size = height x shoot number

Issue - State: closed - Opened by Aariq over 3 years ago - 1 comment

#35 - citation fixes

Issue - State: closed - Opened by embruna over 3 years ago - 1 comment

#34 - figures: can't tell CF and FF apart

Issue - State: closed - Opened by embruna over 3 years ago - 3 comments

#33 - Figure 1 (temp and precipitation)

Issue - State: closed - Opened by embruna over 3 years ago - 1 comment

#32 - remove gray grid lines from figures

Issue - State: closed - Opened by embruna over 3 years ago - 1 comment

#31 - Language consistency

Issue - State: closed - Opened by Aariq over 3 years ago - 1 comment
Labels: manuscript

#30 - multi-line equation doesn't knit to Word

Issue - State: closed - Opened by Aariq over 3 years ago
Labels: bug, manuscript

#29 - Marginal histograms / violin plots of size

Issue - State: closed - Opened by Aariq over 3 years ago - 2 comments
Labels: manuscript

#28 - Document functions

Issue - State: closed - Opened by Aariq over 3 years ago
Labels: documentation

#27 - add growth as covariate

Issue - State: closed - Opened by Aariq over 3 years ago - 1 comment
Labels: enhancement

#26 - use targets package research compendium instead of rrtools compendium package

Pull Request - State: closed - Opened by Aariq over 3 years ago

#25 - Gratia plots

Pull Request - State: closed - Opened by Aariq almost 4 years ago

#24 - Did this large plant really go missing / die?

Issue - State: closed - Opened by Aariq almost 4 years ago - 1 comment

#23 - SPEI history should start in year t+1

Issue - State: closed - Opened by Aariq almost 4 years ago - 3 comments
Labels: bug

#22 - year as a random effect?

Issue - State: closed - Opened by Aariq almost 4 years ago - 1 comment
Labels: question

#21 - Create marginal effects plots for covariates

Issue - State: closed - Opened by Aariq almost 4 years ago
Labels: enhancement

#20 - How is crossbasis smooth different from tensor product [te()] in mgcv package?

Issue - State: closed - Opened by Aariq almost 4 years ago - 2 comments
Labels: question

#19 - select = TRUE and getting p-values for DLNMs

Issue - State: closed - Opened by Aariq almost 4 years ago - 2 comments
Labels: question

#18 - Justification for "cr" spline basis

Issue - State: closed - Opened by Aariq almost 4 years ago - 1 comment
Labels: question

#17 - Justification for gamma parameter

Issue - State: closed - Opened by Aariq almost 4 years ago - 2 comments
Labels: question

#16 - Data quality control

Pull Request - State: closed - Opened by Aariq almost 4 years ago

#15 - Pointblank report for wrangled/tidied dataset

Issue - State: closed - Opened by Aariq almost 4 years ago - 1 comment

#14 - Switched models to use Xavier et al. precip data

Pull Request - State: closed - Opened by Aariq almost 4 years ago

#13 - Fitted flowering probability = 1

Issue - State: closed - Opened by Aariq almost 4 years ago - 1 comment
Labels: bug, high priority

#12 - Switch to using Xavier et al. for precip data

Issue - State: closed - Opened by Aariq almost 4 years ago - 1 comment

#11 - Speed up cb_margeff() by removing for loop

Issue - State: closed - Opened by Aariq almost 4 years ago - 2 comments
Labels: enhancement

#10 - Tests for crossbasis utilities

Issue - State: closed - Opened by Aariq about 4 years ago - 1 comment

#9 - Binder button doesn't work

Issue - State: closed - Opened by Aariq about 4 years ago - 1 comment
Labels: bug

#8 - Changes to API of `cb_margeff`

Issue - State: closed - Opened by Aariq about 4 years ago
Labels: enhancement

#7 - Get CI actions working

Issue - State: closed - Opened by Aariq about 4 years ago

#6 - Get confidence intervals for cross-basis smooths

Issue - State: closed - Opened by Aariq about 4 years ago
Labels: enhancement

#5 - Unexpected row and colulm positions for some plants

Issue - State: closed - Opened by Aariq about 4 years ago - 3 comments
Labels: question

#4 - Keep 3 years of spatial data separate

Issue - State: closed - Opened by Aariq about 4 years ago

#3 - Fix data entry error

Issue - State: closed - Opened by Aariq about 4 years ago

#2 - Deaths

Issue - State: closed - Opened by Aariq about 4 years ago - 1 comment
Labels: high priority

#1 - Switch GH action to use testthat rather than full R CMD check

Issue - State: closed - Opened by Aariq about 4 years ago

GitHub / BrunaLab/HeliconiaDemography issues and pull requests