Ecosyste.ms: Issues

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GitHub / BrkRaw/brkraw issues and pull requests

#72 - Banwoomi patch 20210822

Pull Request - State: closed - Opened by banwoomi over 3 years ago

#71 - Update pvobj.py

Pull Request - State: closed - Opened by banwoomi over 3 years ago - 1 comment

#70 - Para360

Pull Request - State: closed - Opened by banwoomi over 3 years ago

#69 - Update loader.py

Pull Request - State: closed - Opened by banwoomi over 3 years ago

#68 - niftis from brkraw don't have the qform/sform codes specified in the source

Issue - State: closed - Opened by gdevenyi over 3 years ago - 3 comments

#67 - Don't round header affine

Pull Request - State: closed - Opened by gdevenyi over 3 years ago - 1 comment

#65 - Investigate generating NIFTI-MRS standard files

Issue - State: open - Opened by gdevenyi over 3 years ago - 1 comment
Labels: enhancement, good first issue

#64 - Add docker support

Pull Request - State: closed - Opened by ycAbout over 3 years ago - 1 comment

#63 - [bids convert] Improve the way to handle session

Pull Request - State: closed - Opened by ycAbout over 3 years ago - 2 comments

#62 - [BIDS converter] way to handle session in output

Issue - State: closed - Opened by ycAbout over 3 years ago - 2 comments

#61 - [naming] consider change repository name from bruker to brkraw

Issue - State: closed - Opened by ycAbout over 3 years ago - 5 comments

#60 - add support for MSME / MESE type and further refactor

Pull Request - State: closed - Opened by ycAbout over 3 years ago - 4 comments

#59 - [bids convert] add support for MSME / MESE type

Issue - State: closed - Opened by ycAbout over 3 years ago

#58 - [bids converter] Remove .bamt files in bids output

Issue - State: closed - Opened by ycAbout over 3 years ago - 10 comments

#57 - Extract and calculate AcquisitionDuration and add to json sidecar

Pull Request - State: closed - Opened by ycAbout over 3 years ago

#55 - fix RepetitionTime is mutually exclusive with VolumeTiming

Pull Request - State: closed - Opened by ycAbout over 3 years ago - 5 comments

#54 - RepetitionTime is mutually exclusive with VolumeTiming

Issue - State: closed - Opened by ycAbout over 3 years ago

#53 - fix CogAtlasID and CogPOID in bids output error

Pull Request - State: closed - Opened by ycAbout over 3 years ago - 2 comments

#51 - [bids output] CogAtlasID should match format "uri", so does CogPOID

Issue - State: closed - Opened by ycAbout over 3 years ago - 5 comments

#50 - multiple improvements of bids output phase 1

Pull Request - State: closed - Opened by ycAbout over 3 years ago - 3 comments

#49 - Paravision 360.2

Issue - State: closed - Opened by araikes over 3 years ago - 24 comments

#48 - Error in running command-line commands

Issue - State: closed - Opened by suhyun417 over 3 years ago - 4 comments

#47 - fix generate typo

Pull Request - State: closed - Opened by ycAbout over 3 years ago - 1 comment

#45 - [bids_helper][bids_convert] Fix input folder issue

Pull Request - State: closed - Opened by ycAbout over 3 years ago

#44 - Consider change master branch to main branch

Issue - State: closed - Opened by ycAbout over 3 years ago - 3 comments

#43 - tonii_all fails with cryptic error if run on single dataset

Issue - State: closed - Opened by mabast85 over 3 years ago - 4 comments

#42 - bids converter output file should not be xlsx

Issue - State: closed - Opened by ycAbout over 3 years ago - 2 comments

#41 - brkraw not working with a dataset

Issue - State: closed - Opened by ycAbout over 3 years ago - 6 comments

#40 - Push the 0.3.4 release to PyPI

Issue - State: closed - Opened by ycAbout over 3 years ago - 1 comment

#39 - docker version of brkraw

Issue - State: closed - Opened by ycAbout over 3 years ago - 4 comments

#38 - brkraw bids converter does not work well with zipped files.

Issue - State: closed - Opened by ycAbout over 3 years ago - 3 comments

#37 - website bids converter tutorial Jupyter Notebooks link broken

Issue - State: closed - Opened by ycAbout over 3 years ago - 1 comment

#36 - Check that BIDS outputs satisfy validator

Issue - State: closed - Opened by gdevenyi over 3 years ago - 14 comments

#35 - bruker 0.3.6 no longer on pip?

Issue - State: closed - Opened by grandjeanlab almost 4 years ago - 2 comments

#33 - PV6 Supine vs Prone does not change conversion

Issue - State: open - Opened by gdevenyi almost 4 years ago - 4 comments
Labels: bug

#32 - PV5 only allows Human as subject type

Issue - State: open - Opened by gdevenyi almost 4 years ago - 1 comment
Labels: documentation, enhancement

#31 - Naming convention of output file using brkraw tonii

Issue - State: closed - Opened by hille about 4 years ago - 7 comments

#30 - CSI(MRSI) Data Conversion to nifti

Issue - State: open - Opened by amirshamaei about 4 years ago - 2 comments
Labels: enhancement, good first issue

#29 - Updates on the Paper.md file

Pull Request - State: closed - Opened by jsmi-d over 4 years ago - 1 comment

#28 - #18 Correct LICENSE file

Pull Request - State: closed - Opened by dvm-shlee over 4 years ago

#27 - tonii_all crashes if run against a bruker study directory

Issue - State: closed - Opened by gdevenyi over 4 years ago - 4 comments

#26 - Feature Request: Add override settings for orientation information

Issue - State: closed - Opened by gdevenyi over 4 years ago - 3 comments

#23 - Suggestion: stack tripilot slices into single image

Issue - State: closed - Opened by gdevenyi over 4 years ago - 5 comments

#22 - Review Comments JOSS, Reviewer Martin Wegrzyn

Issue - State: open - Opened by mwegrzyn over 4 years ago - 1 comment
Labels: enhancement

#21 - How can correct function be verified?

Issue - State: open - Opened by mih over 4 years ago - 4 comments
Labels: enhancement

#20 - Contribute low-level code to NiBabel?

Issue - State: closed - Opened by mih over 4 years ago - 2 comments

#19 - Fix typo

Pull Request - State: closed - Opened by mih over 4 years ago

#18 - LICENSE file contains more than one license (merge-conflict left-over)

Issue - State: closed - Opened by mih over 4 years ago - 2 comments

#17 - Could SimpleITK become an optional dependency?

Issue - State: closed - Opened by mih over 4 years ago - 2 comments

#16 - Incompatible with Python 3.8?

Issue - State: closed - Opened by mih over 4 years ago - 3 comments
Labels: enhancement

#15 - python -> Python for uniform capitalization

Pull Request - State: closed - Opened by mih over 4 years ago - 1 comment

#14 - Unsubstantiated claim re market share OR citation needed

Issue - State: closed - Opened by mih over 4 years ago

#13 - review comments based on JOSS submissin

Issue - State: closed - Opened by PeerHerholz over 4 years ago - 2 comments

#12 - Failed EPI conversion to nifti

Issue - State: closed - Opened by Gab-D-G over 4 years ago - 12 comments

#11 - bids_convert crashing

Issue - State: closed - Opened by egarza over 4 years ago - 10 comments

#10 - Remove position correction broke PV5.1 conversion

Issue - State: closed - Opened by gdevenyi over 4 years ago - 7 comments

#9 - rostral-caudal axis is flipped for tail prone data

Issue - State: closed - Opened by eugenegkim over 4 years ago - 8 comments

#8 - output diffusion gradients

Issue - State: closed - Opened by lconcha over 4 years ago - 12 comments

#7 - 3D FLASH T1w slope

Issue - State: closed - Opened by egarza over 4 years ago - 13 comments

#5 - Trying to reconstruct non-existant "recoid" doesn't give helpful error

Issue - State: closed - Opened by gdevenyi over 4 years ago - 3 comments

#3 - documentation for --recoid and --scanid unclear

Issue - State: closed - Opened by gdevenyi over 4 years ago - 9 comments

#2 - brkraw tonii_all fails while tonii succeeds

Issue - State: closed - Opened by gdevenyi over 4 years ago - 5 comments