Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / BrkRaw/brkraw issues and pull requests

#173 - master branch -- BIDS conversion warning about pandas usage

Issue - State: open - Opened by gdevenyi 27 days ago - 2 comments

#171 - Use new BIDS tags to create nifti file names

Pull Request - State: open - Opened by jeremie-fouquet 5 months ago

#169 - Implement New Plugin Architecture and Prepare for 0.4.0 Release

Pull Request - State: closed - Opened by dvm-shlee 7 months ago

#168 - Update CONTRIBUTING.MD

Pull Request - State: closed - Opened by dvm-shlee 7 months ago

#167 - [refactor] brkraw api and update for future version

Pull Request - State: closed - Opened by dvm-shlee 7 months ago

#166 - [patch] macos remove testing python 3.8 and 3.9

Pull Request - State: closed - Opened by dvm-shlee 7 months ago

#165 - Refactor and Ongoing Development in API Module

Pull Request - State: closed - Opened by dvm-shlee 7 months ago

#164 - Overhaul of the Reconstruction Pipeline to use a scanobj

Pull Request - State: closed - Opened by timwahoo 7 months ago

#163 - [hotpatch] resolving typing issue for python version < 3.10

Pull Request - State: closed - Opened by dvm-shlee 7 months ago

#162 - [patch] update type annotations for python <3.9 compatibility

Pull Request - State: closed - Opened by dvm-shlee 7 months ago

#160 - Simplifying and Reducing brkrecon submodule

Issue - State: closed - Opened by timwahoo 8 months ago - 2 comments
Labels: enhancement

#159 - Missing buttons and image preview display when running in Apptainer

Issue - State: closed - Opened by pcamach2 8 months ago - 5 comments

#158 - Adding brkrecon CLI and minor updates

Pull Request - State: closed - Opened by timwahoo 8 months ago

#157 - Brkraw CLI for bruker recon of simple cartesian sequences (FLASH, MGE, RARE)

Issue - State: open - Opened by timwahoo 8 months ago - 5 comments
Labels: enhancement

#156 - Integration of Brkraw into Neurodesktop

Issue - State: closed - Opened by timwahoo 9 months ago - 3 comments

#154 - GUI Unable to open PV7 and PV360 zip files

Issue - State: closed - Opened by timwahoo 10 months ago - 6 comments

#153 - Compressed Sensing Reconstruction for Undersampled Cartesian Sequences PV360.3.3<

Issue - State: open - Opened by timwahoo 10 months ago
Labels: enhancement

#152 - Reconstruction functions for linearly acquired cartesian sequences

Pull Request - State: closed - Opened by timwahoo 10 months ago - 1 comment
Labels: enhancement

#151 - Updates for version string and test scripts for github action

Pull Request - State: closed - Opened by dvm-shlee 10 months ago

#150 - Revert "Minor update"

Pull Request - State: closed - Opened by dvm-shlee 10 months ago

#149 - Minor update

Pull Request - State: closed - Opened by dvm-shlee 10 months ago

#148 - Regular Bruker recon tools from raw fid

Issue - State: closed - Opened by timwahoo 10 months ago - 2 comments
Labels: enhancement, good first issue

#147 - version string update

Pull Request - State: closed - Opened by dvm-shlee 10 months ago

#146 - Upcoming Major Update 0.4.0: Scheduled for Mid May 2024

Issue - State: open - Opened by dvm-shlee 10 months ago - 3 comments
Labels: Notice

#145 - Bids_helper quits when method file is missing

Issue - State: open - Opened by mschneider1711 10 months ago - 1 comment
Labels: enhancement

#144 - Bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#142 - Convert specific file via CLI

Issue - State: open - Opened by TheChymera 12 months ago - 4 comments
Labels: enhancement

#141 - Jupyter notebook tutorial gives FileNotValid error

Issue - State: open - Opened by jonathan-columbiau about 1 year ago - 2 comments
Labels: bug

#140 - Fails conversion with tonii_all

Issue - State: open - Opened by mschneider1711 about 1 year ago - 8 comments
Labels: bug

#139 - Bump actions/checkout from 2 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#138 - Bump actions/setup-python from 2 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#137 - Citation

Pull Request - State: closed - Opened by Remi-Gau about 1 year ago

#136 - [MAINT] update docker dev recipe

Pull Request - State: closed - Opened by Remi-Gau about 1 year ago

#135 - consider moving the doc within package repo

Issue - State: open - Opened by Remi-Gau about 1 year ago - 1 comment
Labels: enhancement

#134 - [MAINT] update GHA workflow for tests

Pull Request - State: closed - Opened by Remi-Gau about 1 year ago - 4 comments

#133 - [MAINT] remove contributing

Pull Request - State: closed - Opened by Remi-Gau about 1 year ago

#132 - Sourcery refactoring suggestions

Issue - State: open - Opened by Remi-Gau about 1 year ago - 1 comment
Labels: enhancement

#131 - [MAINT] Flake8

Pull Request - State: closed - Opened by Remi-Gau about 1 year ago

#129 - automate the build of the docker image

Issue - State: closed - Opened by Remi-Gau about 1 year ago - 1 comment

#128 - duplicate "contributing" file

Issue - State: closed - Opened by Remi-Gau about 1 year ago

#127 - add some style guide lines

Issue - State: open - Opened by Remi-Gau about 1 year ago - 1 comment
Labels: enhancement

#126 - modernize packaging

Issue - State: closed - Opened by Remi-Gau about 1 year ago

#125 - automated test in CI: bring them back online

Issue - State: closed - Opened by Remi-Gau about 1 year ago - 2 comments

#124 - BIDS - Computation of SliceTiming

Issue - State: open - Opened by gjpcbecq over 1 year ago - 2 comments
Labels: bug

#123 - add options to switch subject/session/study IDs

Pull Request - State: closed - Opened by eugenegkim over 1 year ago

#122 - switch study_id and session_id

Pull Request - State: closed - Opened by eugenegkim over 1 year ago - 1 comment

#121 - add new bids tags

Pull Request - State: closed - Opened by eugenegkim over 1 year ago

#120 - fix bids_helper output name

Pull Request - State: closed - Opened by eugenegkim over 1 year ago

#119 - Output None for inexistent parameter

Pull Request - State: closed - Opened by jeremie-fouquet over 1 year ago - 6 comments

#118 - A few small changes

Pull Request - State: closed - Opened by eugenegkim over 1 year ago - 3 comments

#117 - Reconstruction functions for fully Sampled GRE, RARE, and MSME for PV360

Pull Request - State: closed - Opened by timwahoo over 1 year ago - 2 comments

#116 - Getting parameters from the reco file

Issue - State: closed - Opened by timwahoo over 1 year ago - 1 comment
Labels: enhancement

#115 - 0.3.8, hotfix

Pull Request - State: closed - Opened by dvm-shlee over 1 year ago

#114 - Update README.md

Pull Request - State: closed - Opened by dvm-shlee over 1 year ago

#113 - remove shleeh dependency v0.3.8

Pull Request - State: closed - Opened by dvm-shlee over 1 year ago

#112 - Revert "remove `shleeh` dependency"

Pull Request - State: closed - Opened by dvm-shlee over 1 year ago

#111 - remove `shleeh` dependency

Pull Request - State: closed - Opened by dvm-shlee over 1 year ago

#110 - [Notice] Future Release Schedule and Invitation for New Maintainers

Issue - State: closed - Opened by dvm-shlee over 1 year ago - 3 comments
Labels: Notice

#109 - Allow for single-volume diffusion data and normalize b-vectors

Pull Request - State: closed - Opened by jeremie-fouquet over 1 year ago - 1 comment

#108 - Normalize b-vectors

Issue - State: closed - Opened by jeremie-fouquet over 1 year ago

#107 - Converting single-volume diffusion data fails

Issue - State: closed - Opened by jeremie-fouquet over 1 year ago

#106 - check if VisuAcquisitionProtocol exists before test for localizer

Pull Request - State: closed - Opened by grandjeanlab over 1 year ago

#105 - error with VisuAcquisitionProtocol

Issue - State: closed - Opened by grandjeanlab over 1 year ago

#104 - brkraw tonii generates filenames with parentheses

Issue - State: open - Opened by jeremie-fouquet over 1 year ago
Labels: enhancement

#103 - 'VisuAcqGradEncoding' is not defined

Issue - State: open - Opened by biancadepifanio almost 2 years ago - 2 comments
Labels: bug

#102 - visu_pars file parsing error

Issue - State: open - Opened by archang almost 2 years ago - 1 comment
Labels: bug

#101 - Add missing self attribute

Pull Request - State: closed - Opened by RicardoRios46 almost 2 years ago - 2 comments

#100 - Current GitHub version fails to process using JSON

Issue - State: open - Opened by araikes almost 2 years ago - 14 comments
Labels: bug

#99 - Only json file creation

Issue - State: open - Opened by arefks about 2 years ago - 2 comments
Labels: enhancement

#98 - Keep getting "TypeError: argument of type 'int' is not iterable"

Issue - State: closed - Opened by johnjiang406 about 2 years ago - 5 comments
Labels: bug

#97 - Clarify and correct b-vector format and orientation

Issue - State: open - Opened by jeremie-fouquet about 2 years ago - 7 comments
Labels: enhancement

#96 - Revert to read bval from PVM_DwEffBval and bvec from PVM_DwGradVec

Pull Request - State: closed - Opened by jeremie-fouquet about 2 years ago - 2 comments

#95 - Outputted diffusion bval are not the effective b-values anymore

Issue - State: closed - Opened by jeremie-fouquet about 2 years ago - 4 comments

#94 - [update] issue #92

Pull Request - State: closed - Opened by dvm-shlee about 2 years ago

#93 - default readme in BIDS dataset after conversion

Issue - State: open - Opened by Remi-Gau over 2 years ago - 2 comments
Labels: documentation, enhancement

#92 - JSON updates

Issue - State: closed - Opened by araikes over 2 years ago - 1 comment

#91 - Phase encoding direction in json file not valid

Issue - State: open - Opened by gobejosh over 2 years ago - 1 comment
Labels: enhancement

#90 - Ordering of BVAL/BVEC in DTI data

Issue - State: closed - Opened by mcraig-ibme over 2 years ago - 2 comments

#88 - orientation of phase-encoding reversed DWI image

Issue - State: open - Opened by mcraig-ibme over 2 years ago - 4 comments
Labels: bug

#87 - Revert "Subject ID: Remove non alphanumeric"

Pull Request - State: closed - Opened by dvm-shlee almost 3 years ago

#86 - [massive update] add new feature and bug patches

Pull Request - State: closed - Opened by dvm-shlee almost 3 years ago - 2 comments

#85 - add option '--ignore-localizer' to skip tripilot / some comments are removed

Pull Request - State: closed - Opened by dvm-shlee almost 3 years ago - 2 comments

#84 - Commentary/Request: Please don't commit "commented" code

Issue - State: closed - Opened by gdevenyi almost 3 years ago - 1 comment

#83 - Fix TypeError

Pull Request - State: closed - Opened by banwoomi almost 3 years ago

#82 - Version check [VisuVersion]

Pull Request - State: closed - Opened by banwoomi almost 3 years ago - 1 comment

#81 - Subject ID: Remove non alphanumeric

Pull Request - State: closed - Opened by banwoomi almost 3 years ago - 7 comments

#80 - compability PV360V3

Pull Request - State: closed - Opened by grandjeanlab almost 3 years ago

#79 - PV360v3.1.

Issue - State: closed - Opened by karthikc777 almost 3 years ago - 10 comments

#78 - xlrd 2.0.1 Dropped Supports of XLSX

Issue - State: closed - Opened by cecilyen almost 3 years ago - 5 comments

#77 - Corrections in JSON Template

Issue - State: open - Opened by cecilyen almost 3 years ago - 6 comments
Labels: enhancement

#76 - Multiple runs of the same modality conflict

Issue - State: closed - Opened by milaurose almost 3 years ago - 2 comments

#75 - DTI conversion

Issue - State: open - Opened by araikes about 3 years ago - 6 comments
Labels: enhancement

#74 - Master

Pull Request - State: closed - Opened by lconcha about 3 years ago

#73 - Master

Pull Request - State: closed - Opened by lconcha about 3 years ago - 4 comments