BrainDynamicsUSYD/nftsim issues and pull requests

#178 - Define nutilde in documentation or cpp comments

Issue - State: open - Opened by kevinkadak about 4 years ago

#177 - Compiling on linux

Issue - State: closed - Opened by benfulcher almost 6 years ago - 2 comments
Labels: bug

#176 - Compilation on Mac OS

Issue - State: closed - Opened by benfulcher almost 6 years ago - 1 comment

#175 - Update input Tau value check message

Issue - State: open - Opened by stuart-knock about 6 years ago
Labels: clean-up

#174 - Prepare release after paper acceptance

Issue - State: closed - Opened by pausz over 6 years ago
Labels: admin

#173 - Check spatiotemporal generation of white noise

Issue - State: open - Opened by pausz over 6 years ago

#172 - Check white noise

Pull Request - State: closed - Opened by pausz over 6 years ago

#171 - Updates configs_compare.

Pull Request - State: closed - Opened by stuart-knock over 6 years ago

#170 - Fix pulsesigmoid duration

Pull Request - State: closed - Opened by stuart-knock over 6 years ago

#169 - Check and update configs/Plasticity and configs/TMS

Issue - State: open - Opened by pausz over 6 years ago
Labels: bug, clean-up

#168 - Numerical tests

Pull Request - State: closed - Opened by stuart-knock over 6 years ago - 1 comment
Labels: test, core

#167 - Time validation

Pull Request - State: closed - Opened by stuart-knock over 6 years ago
Labels: core, sci

#166 - Check all specified Tau in vector form.

Issue - State: closed - Opened by stuart-knock over 6 years ago
Labels: bug

#165 - Check the Length parameter in thalamic populations in EIRS based config files

Issue - State: open - Opened by pausz over 6 years ago
Labels: bug, question, sci

#164 - Check initialization of variables and use consistent mechanisms

Issue - State: open - Opened by pausz over 6 years ago
Labels: enhancement, refactor, core

#163 - Coupling ramp nuinit

Pull Request - State: closed - Opened by stuart-knock over 6 years ago - 1 comment
Labels: bug, core

#162 - Bug in PulseSigmoid when Duration is not set.

Issue - State: closed - Opened by stuart-knock over 6 years ago
Labels: bug

#161 - Adds a check that 'Nodes' is a perfect square.

Pull Request - State: closed - Opened by stuart-knock over 6 years ago
Labels: bug, core

#160 - Review Configf::find() and its use.

Issue - State: open - Opened by stuart-knock over 6 years ago
Labels: bug

#159 - No validation of Nodes

Issue - State: closed - Opened by stuart-knock over 6 years ago - 2 comments
Labels: bug

#158 - Broken validation of user specified times.

Issue - State: closed - Opened by stuart-knock over 6 years ago
Labels: bug

#157 - Fixes CouplingRamp deltanu indexing issue.

Pull Request - State: closed - Opened by stuart-knock over 6 years ago - 1 comment
Labels: clean-up

#156 - Review and decide on the behaviour of PulseSigmoid

Issue - State: closed - Opened by pausz almost 7 years ago - 1 comment
Labels: question, sci

#155 - Update User Manual

Issue - State: open - Opened by pausz almost 7 years ago
Labels: documentation

#154 - Review and remove/replace the restrict keyword from stencil.

Issue - State: open - Opened by stuart-knock almost 7 years ago
Labels: clean-up

#153 - Review various partial/dead code topologies

Issue - State: open - Opened by stuart-knock almost 7 years ago
Labels: clean-up

#152 - Indexing bug in deltanu assignment in CouplingRamp

Issue - State: closed - Opened by stuart-knock almost 7 years ago
Labels: bug, clean-up

#151 - Define spatial domain in base NF class

Issue - State: open - Opened by stuart-knock almost 7 years ago
Labels: refactor, core

#150 - Add an explicit spatial component to TimeSeries

Issue - State: open - Opened by stuart-knock almost 7 years ago
Labels: enhancement, new-feature, core

#149 - Handle replication of data in TIMESERIES

Issue - State: open - Opened by pausz almost 7 years ago
Labels: optimize

#148 - Integrate Eli Pulse train with randomised periods

Issue - State: open - Opened by pausz almost 7 years ago
Labels: enhancement, new-feature, sci, published-work

#147 - Improve +nf matlab functions

Issue - State: open - Opened by pausz almost 7 years ago - 1 comment
Labels: enhancement, analysis

#146 - Renames NeuroField to NFTsim

Pull Request - State: closed - Opened by stuart-knock almost 7 years ago - 4 comments
Labels: admin, clean-up

#145 - Separate Stimulus concept from base Timeseries

Issue - State: open - Opened by stuart-knock almost 7 years ago
Labels: enhancement, refactor

#144 - Review timeseries

Pull Request - State: closed - Opened by stuart-knock almost 7 years ago - 5 comments
Labels: enhancement, new-feature, sci

#143 - Timeseries fire() redundancy.

Issue - State: open - Opened by stuart-knock almost 7 years ago
Labels: optimize

#142 - Configf: add multiple index (unsigned int) read method.

Issue - State: open - Opened by stuart-knock almost 7 years ago
Labels: clean-up

#141 - Replace instances of neurofield/NeuroField with NFTsim/nftsim

Issue - State: closed - Opened by pausz almost 7 years ago
Labels: admin

#140 - Generalize Pulse stimuli

Issue - State: closed - Opened by pausz almost 7 years ago - 1 comment

#139 - Fix superimpose

Pull Request - State: closed - Opened by stuart-knock almost 7 years ago

#138 - Refactor timeseries to make individual functions (eg, white, sine) and their parameters consistent

Issue - State: closed - Opened by pausz almost 7 years ago - 1 comment
Labels: refactor

#137 - Check and update Sine stimulus

Issue - State: closed - Opened by pausz almost 7 years ago
Labels: refactor

#136 - Keyword `Duration` affects all subsequent stimuli if using superimposition

Issue - State: closed - Opened by pausz almost 7 years ago - 1 comment
Labels: bug

#135 - Job Description

Issue - State: closed - Opened by pausz about 7 years ago

#134 - Support binary output files

Issue - State: open - Opened by pausz about 7 years ago
Labels: enhancement, new-feature

#133 - Spatialize parameters

Issue - State: open - Opened by pausz about 7 years ago
Labels: enhancement, new-feature, sci

#132 - Create accuracy tests

Issue - State: open - Opened by pausz about 7 years ago
Labels: enhancement, test, core

#131 - Bug fixes and small code improvements

Issue - State: open - Opened by pausz about 7 years ago
Labels: bug, enhancement, clean-up

#130 - Matlab review

Pull Request - State: closed - Opened by stuart-knock about 7 years ago

#129 - Benchmark headers

Pull Request - State: closed - Opened by stuart-knock about 7 years ago

#128 - Implement spherical topology

Issue - State: open - Opened by pausz about 7 years ago - 1 comment
Labels: new-feature, sci

#127 - Restore functionality: set arbitrary initial conditions

Issue - State: open - Opened by pausz about 7 years ago
Labels: enhancement, test, sci, restore-feature

#126 - Specify initial conditions for the wave equation

Issue - State: open - Opened by pausz about 7 years ago
Labels: enhancement, new-feature, sci

#125 - Restore functionality: specify node indices independently for different variables

Issue - State: open - Opened by pausz about 7 years ago
Labels: enhancement, restore-feature

#124 - Onset of first superimposed stimulus (Pulse) is always at t=0

Issue - State: closed - Opened by pausz about 7 years ago
Labels: bug

#123 - Add default benchmark files

Pull Request - State: closed - Opened by pausz about 7 years ago

#122 - Implement a basic timeseries visualizer in +nf

Issue - State: closed - Opened by pausz about 7 years ago
Labels: enhancement

#121 - Matlab cleanup

Pull Request - State: closed - Opened by pausz over 7 years ago

#120 - Rename configuration files

Pull Request - State: closed - Opened by pausz over 7 years ago

#119 - Add explicit target for g++ in Makefile

Issue - State: closed - Opened by pausz over 7 years ago - 1 comment
Labels: enhancement

#118 - MacOS + clang runtime error

Issue - State: open - Opened by j-roberts over 7 years ago - 7 comments
Labels: bug

#117 - Benchmarks

Pull Request - State: closed - Opened by stuart-knock over 7 years ago - 3 comments
Labels: test

#116 - clang compilation

Issue - State: closed - Opened by benfulcher over 7 years ago - 1 comment

#114 - Correct check of mutiplicity for Deltat and Interval

Issue - State: closed - Opened by pausz over 7 years ago

#110 - Improve default output name convention

Issue - State: closed - Opened by pausz over 7 years ago
Labels: enhancement, core

#109 - Rename variables

Issue - State: closed - Opened by pausz over 7 years ago

#103 - Check error conditions on wave.cpp

Issue - State: open - Opened by pausz over 7 years ago
Labels: question

#102 - Add timestamp to output files

Issue - State: closed - Opened by pausz over 7 years ago - 1 comment
Labels: enhancement

#101 - Investigate numerical differences when using Coupling:Map and Coupling:Ramp

Issue - State: closed - Opened by pausz over 7 years ago - 2 comments
Labels: bug, question, optimize, sci

#100 - Improve matlab +nf module

Issue - State: closed - Opened by pausz over 7 years ago - 2 comments
Labels: core

#98 - Improve tools for developers

Issue - State: closed - Opened by pausz over 7 years ago
Labels: new-feature, core

#97 - Code clean up & housekeeping

Issue - State: open - Opened by pausz over 7 years ago - 1 comment
Labels: enhancement, refactor, clean-up

#94 - Fix compilation errors and warning across compilers and operating systems

Issue - State: open - Opened by pausz almost 8 years ago - 1 comment
Labels: enhancement

#92 - Identify global variables and constants from standard libraries

Issue - State: open - Opened by pausz almost 8 years ago
Labels: clean-up

#90 - Remove multiple definitions of "global" parameters

Issue - State: open - Opened by pausz almost 8 years ago
Labels: clean-up

#89 - Check white noise generation

Issue - State: closed - Opened by pausz almost 8 years ago - 14 comments
Labels: optimize, refactor, core, sci

#87 - Improve burst response dynamics

Issue - State: closed - Opened by pausz almost 8 years ago
Labels: refactor

#82 - Implement temporal BLN

Issue - State: open - Opened by pausz almost 8 years ago - 2 comments
Labels: enhancement, new-feature

#67 - Autogeneration of config files

Issue - State: open - Opened by pausz about 8 years ago - 1 comment
Labels: new-feature

#64 - Introduce symbol for comments in the config file

Issue - State: open - Opened by pausz about 8 years ago - 1 comment
Labels: enhancement, core

#62 - Review code

Issue - State: open - Opened by pausz about 8 years ago
Labels: admin

#57 - Incorporate patchy propagator

Issue - State: open - Opened by pausz over 8 years ago
Labels: sci, restore-feature

#56 - General admin stuff

Issue - State: open - Opened by pausz over 8 years ago
Labels: admin

#54 - Benchmarks

Issue - State: closed - Opened by pausz over 8 years ago - 1 comment
Labels: test, programmer

#53 - Write a small collection of unit tests

Issue - State: open - Opened by pausz over 8 years ago
Labels: enhancement, test, programmer

#50 - Meeting

Issue - State: open - Opened by pausz over 8 years ago
Labels: admin

#48 - Update documentation to reflect latest changes

Issue - State: open - Opened by pausz over 8 years ago - 1 comment
Labels: documentation, programmer

#47 - Adopt continuous integration to compile the code on different platforms

Issue - State: open - Opened by pausz over 8 years ago - 1 comment
Labels: enhancement, test

#39 - Test and document Coupling of type Matrix

Issue - State: closed - Opened by pausz about 9 years ago
Labels: enhancement, documentation, test

#33 - Add neuromodulation

Issue - State: open - Opened by pausz about 9 years ago - 2 comments
Labels: enhancement, new-feature, core, sci

#28 - Implement Absorbing Boundary Conditions

Issue - State: open - Opened by pausz about 9 years ago
Labels: refactor, new-feature, core, sci, restore-feature

#26 - Add example of a bihemispheric corticothalamic model

Issue - State: open - Opened by pausz about 9 years ago
Labels: documentation, sci

#24 - Restarting a simulation

Issue - State: open - Opened by pausz over 9 years ago - 6 comments
Labels: restore-feature

#22 - Parser refactoring

Issue - State: open - Opened by pausz over 9 years ago - 1 comment
Labels: question, refactor, core

#21 - Generalize population and connection indexing/labeling

Issue - State: open - Opened by pausz over 9 years ago
Labels: enhancement, refactor, core

#20 - Find a better way to incorporate the derived classes in the solver

Issue - State: open - Opened by pausz over 9 years ago - 1 comment
Labels: enhancement, refactor, programmer, core

#19 - Review parameter order or config file definition

Issue - State: open - Opened by pausz over 9 years ago
Labels: question, refactor, programmer, restore-feature

#7 - Documentation: wiki, users manual content and dev documentation

Issue - State: closed - Opened by RomeshA over 9 years ago - 1 comment
Labels: documentation, programmer, sci

#6 - Add TMS/plasticity examples to published configs

Issue - State: closed - Opened by RomeshA over 9 years ago
Labels: enhancement, documentation, sci

#5 - Add bursting examples to published configs

Issue - State: open - Opened by RomeshA over 9 years ago
Labels: enhancement, documentation, sci, published-work

GitHub / BrainDynamicsUSYD/nftsim issues and pull requests