BouchardLab/pyuoi issues and pull requests

#218 - Version hints

Pull Request - State: closed - Opened by JesseLivezey over 1 year ago - 1 comment

#217 - remove np.random as RandomState

Pull Request - State: closed - Opened by JesseLivezey over 1 year ago - 1 comment

#216 - fixed cython compile error and np.int

Pull Request - State: closed - Opened by JesseLivezey over 1 year ago - 1 comment

#215 - fix "module not found" error after install from source

Pull Request - State: closed - Opened by mckenziephagen over 1 year ago - 1 comment

#214 - Cython>0.29 prevents install from source

Issue - State: closed - Opened by mckenziephagen over 1 year ago

#213 - Numpy > 1.20 leads to np.int error

Issue - State: closed - Opened by mckenziephagen over 1 year ago

#212 - numpy ValueError from lbfgs._lowlevel

Issue - State: open - Opened by jihyunbak over 2 years ago

#211 - convert floats to int correctly

Pull Request - State: closed - Opened by JesseLivezey over 2 years ago - 1 comment

#210 - Resample

Pull Request - State: open - Opened by kseniyausovich over 2 years ago

#209 - Debug roc curve metrics

Pull Request - State: closed - Opened by josephmaa over 2 years ago

#208 - Add support for class weights in logistic regression

Issue - State: open - Opened by JesseLivezey over 2 years ago - 1 comment

#207 - version bump to 1.1.1

Pull Request - State: closed - Opened by JesseLivezey almost 3 years ago

#206 - Analyze bootstraps

Pull Request - State: closed - Opened by josephmaa almost 3 years ago - 1 comment

#205 - Add tolerance to lasso and elasticnet

Pull Request - State: closed - Opened by JesseLivezey about 3 years ago

#204 - Docstring corrections, tol setting in lasso, temp picasso intercept fix

Pull Request - State: closed - Opened by JesseLivezey almost 4 years ago

#203 - Add "parameter tips" page to docs

Issue - State: open - Opened by JesseLivezey almost 4 years ago - 2 comments

#202 - sphinx gallery change

Pull Request - State: closed - Opened by JesseLivezey almost 4 years ago

#201 - Index mask in Logistic regression

Pull Request - State: closed - Opened by JesseLivezey almost 4 years ago

#200 - fixes due to sklearn changes

Pull Request - State: closed - Opened by JesseLivezey almost 4 years ago - 1 comment

#199 - Update imports from sklearn to account for new linear_model organization

Issue - State: closed - Opened by pssachdeva almost 4 years ago

#198 - Index zeros rather than mask in BFGS for multiclass logistic with unshared support.

Issue - State: closed - Opened by JesseLivezey almost 4 years ago

#197 - Expose `tol` in UoI Lasso model

Issue - State: closed - Opened by JesseLivezey about 4 years ago

#196 - Multi-output

Issue - State: open - Opened by briandesilva over 4 years ago - 2 comments

#195 - adding resampling.py from a clean rebase of master and some tests for…

Pull Request - State: closed - Opened by akumar01 almost 5 years ago

#194 - fixed error in paper edits

Pull Request - State: closed - Opened by pssachdeva about 5 years ago - 1 comment

#193 - Update paper.bib

Pull Request - State: closed - Opened by danielskatz about 5 years ago - 1 comment

#192 - 1.0.0

Pull Request - State: closed - Opened by JesseLivezey about 5 years ago - 1 comment

#191 - Fixed poisson intercept to work with MPI. Merged MPI tests into one, …

Pull Request - State: closed - Opened by pssachdeva about 5 years ago - 1 comment

#190 - edits for review

Pull Request - State: closed - Opened by JesseLivezey about 5 years ago - 1 comment

#189 - adding dois to paper.bib

Pull Request - State: closed - Opened by pssachdeva about 5 years ago - 1 comment

#188 - paper review updates, small language changes

Pull Request - State: closed - Opened by pssachdeva about 5 years ago - 1 comment

#187 - updates to paper for response to review

Pull Request - State: closed - Opened by pssachdeva about 5 years ago - 1 comment

#186 - updates for install

Pull Request - State: closed - Opened by JesseLivezey about 5 years ago - 1 comment

#185 - added contiguous check

Pull Request - State: closed - Opened by JesseLivezey about 5 years ago - 1 comment

#184 - [WIP] Fix mismatch in target and prediction shape in linear regressors

Pull Request - State: closed - Opened by JesseLivezey about 5 years ago - 3 comments

#183 - Fixed doc errors and added docs tests

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 1 comment

#182 - added build script for pypi

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 1 comment

#181 - Now available on pypi

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 1 comment

#180 - fix intercept calculation in post_fit and handled edge cases with constant or zero response variable

Pull Request - State: closed - Opened by pssachdeva over 5 years ago - 1 comment

#179 - made pycasso optional

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 2 comments

#178 - remove notebooks

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 1 comment

#177 - added manifest

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 1 comment

#176 - Use MPI to parallelize fits in decomposition

Issue - State: open - Opened by JesseLivezey over 5 years ago
Labels: 2.0.0

#175 - Test on osx

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 1 comment

#174 - added pyproject toml to handle numpy and cython build dep

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 2 comments

#173 - added fixes for paper

Pull Request - State: closed - Opened by pssachdeva over 5 years ago - 1 comment

#172 - authors added to paper

Pull Request - State: closed - Opened by pssachdeva over 5 years ago - 1 comment

#171 - added license and copyright info

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 1 comment

#170 - quick fix for warm starts in UoI Poisson

Pull Request - State: closed - Opened by pssachdeva over 5 years ago - 1 comment

#169 - updated BIC/AIC/AICc to use total log-likelihood, rather than mean log-likelihood

Pull Request - State: closed - Opened by pssachdeva over 5 years ago - 2 comments

#168 - readme updated

Pull Request - State: closed - Opened by pssachdeva over 5 years ago - 1 comment

#167 - Docs edits

Pull Request - State: closed - Opened by pssachdeva over 5 years ago - 1 comment

#166 - paper edits from kb

Pull Request - State: closed - Opened by pssachdeva over 5 years ago - 1 comment

#165 - paper edits

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 1 comment

#164 - Information Criteria using mean log-likelihood rather than total log-likelihood

Issue - State: closed - Opened by pssachdeva over 5 years ago

#163 - First draft of paper

Pull Request - State: closed - Opened by pssachdeva over 5 years ago - 1 comment

#162 - Lasso gallery

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 1 comment

#161 - nmf gallery cleanup

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 1 comment

#160 - add README for gallery

Pull Request - State: closed - Opened by ajtritt over 5 years ago - 1 comment

#159 - add sphinx-gallery to repo

Pull Request - State: closed - Opened by ajtritt over 5 years ago

#158 - Add sphinx-gallery to repo

Pull Request - State: closed - Opened by ajtritt over 5 years ago

#157 - nmf documentation

Pull Request - State: closed - Opened by pssachdeva over 5 years ago - 1 comment

#156 - adding dissimiliarity for nmf

Pull Request - State: closed - Opened by pssachdeva over 5 years ago - 1 comment

#155 - Update main README.md

Issue - State: closed - Opened by JesseLivezey over 5 years ago - 1 comment
Labels: docs

#154 - finished API and docstring modifications

Pull Request - State: closed - Opened by pssachdeva over 5 years ago - 2 comments

#153 - added logo

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 1 comment

#152 - updated install instructions

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 1 comment

#151 - Background documentation except NMF

Pull Request - State: closed - Opened by pssachdeva over 5 years ago - 1 comment

#150 - Add sphinx gallery to repo

Issue - State: closed - Opened by ajtritt over 5 years ago
Labels: docs

#149 - add package build to rtd

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago

#148 - fix file location

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 1 comment

#147 - add rtd config

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 1 comment

#146 - moved cython

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 1 comment

#145 - changed default arguments, and removed empty lines from docstring

Pull Request - State: closed - Opened by pssachdeva over 5 years ago - 1 comment

#144 - adding contributing doc

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 1 comment

#143 - API documentation for decomposition methods

Pull Request - State: closed - Opened by pssachdeva over 5 years ago - 1 comment

#142 - removed six and added 3.7 to travis

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 1 comment

#141 - Cleaned up the mpi_utils args and docstring

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago

#140 - Added MPI docs page

Pull Request - State: closed - Opened by JesseLivezey over 5 years ago - 1 comment

#139 - Implements stability selection for CSS/CUR

Pull Request - State: closed - Opened by pssachdeva over 5 years ago - 1 comment

#138 - Update default arguments

Issue - State: closed - Opened by pssachdeva over 5 years ago - 1 comment

#137 - MPI Documentation

Issue - State: closed - Opened by pssachdeva over 5 years ago
Labels: docs

#136 - Background Documentation on NMF

Issue - State: closed - Opened by pssachdeva over 5 years ago - 2 comments
Labels: docs

#135 - Community Guidelines

Issue - State: closed - Opened by pssachdeva over 5 years ago
Labels: docs

#134 - Examples (decomposition) Documentation

Issue - State: closed - Opened by pssachdeva over 5 years ago - 2 comments
Labels: docs

#133 - Examples (linear_model) Documentation

Issue - State: closed - Opened by pssachdeva over 5 years ago - 1 comment
Labels: docs

#132 - API Documentation Section

Issue - State: closed - Opened by pssachdeva over 5 years ago - 1 comment
Labels: docs

#131 - Installation Doc Page

Issue - State: closed - Opened by pssachdeva over 5 years ago
Labels: docs

#130 - Remove Python2 compatibility

Issue - State: closed - Opened by pssachdeva over 5 years ago - 1 comment

#127 - Resampling

Pull Request - State: closed - Opened by akumar01 over 5 years ago - 3 comments

#125 - "test_UoI_NMF_fit_tranform" test sometimes failes on python 3.5

Issue - State: closed - Opened by JesseLivezey over 5 years ago

#124 - update defaults for bootstraps and intersection strength

Pull Request - State: closed - Opened by ajtritt over 5 years ago - 2 comments

#113 - Check if UoI Poisson correctly handles cases where the response variable is zero in all samples

Issue - State: closed - Opened by pssachdeva over 5 years ago

#102 - missing source file

Issue - State: closed - Opened by ajtritt almost 6 years ago - 1 comment

#100 - Use pytest parametrize rather than loops.

Issue - State: closed - Opened by JesseLivezey almost 6 years ago

#99 - Remove Makefile?

Issue - State: closed - Opened by JesseLivezey almost 6 years ago

#96 - Improve the OW-LBFGS implementation

Issue - State: closed - Opened by JesseLivezey almost 6 years ago - 1 comment

GitHub / BouchardLab/pyuoi issues and pull requests