Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / BoPeng/simuPOP issues and pull requests

#119 - Fix compatibility with Python 3.11

Pull Request - State: closed - Opened by BoPeng 8 months ago

#118 - add github actions for testing

Pull Request - State: closed - Opened by SimonGreenhill 8 months ago - 1 comment

#117 - Py3.9 deprecates the second argument to random.shuffle

Issue - State: closed - Opened by SimonGreenhill 8 months ago - 6 comments

#116 - Issue installing simuPOP's new patch due to zlib.h missing file

Issue - State: closed - Opened by marina-klemm 12 months ago - 4 comments
Labels: Help needed

#115 - Issue114

Pull Request - State: closed - Opened by BoPeng 12 months ago

#113 - Cannot use frequency list to initialize beginFreq in trajectory

Issue - State: closed - Opened by marina-klemm about 1 year ago - 3 comments

#112 - Selection with clonal reproduction not working

Issue - State: closed - Opened by cruzan-lab about 1 year ago - 40 comments

#111 - MlSelector with Loci=sim.ALL_AVAIL not working

Issue - State: closed - Opened by cruzan-lab about 1 year ago - 2 comments

#110 - How to export my simulation after saveCSV got deprecated?

Issue - State: closed - Opened by marina-klemm about 1 year ago - 2 comments

#109 - Subpopulation statistics

Issue - State: closed - Opened by cruzan-lab about 1 year ago - 18 comments

#108 - RuntimeError: Cannot set __builtins__ for a dictionary.

Issue - State: closed - Opened by marina-klemm about 1 year ago - 4 comments

#107 - Syntax error in defdict.py example script

Issue - State: closed - Opened by cruzan-lab about 1 year ago - 2 comments
Labels: invalid

#106 - Extracting statistics from individual subpopulations

Issue - State: closed - Opened by cruzan-lab about 1 year ago - 17 comments

#105 - compile error: simuPOP_shstd not found

Issue - State: closed - Opened by ntakebay over 1 year ago - 4 comments

#104 - Changing subpopulation migration parameters

Issue - State: closed - Opened by cruzan-lab over 1 year ago - 5 comments

#103 - conda-forge release of simuPOP 1.1.12 fails

Issue - State: open - Opened by BoPeng over 1 year ago - 1 comment
Labels: Help needed

#102 - simuPOP 1.1.11 doesn't compile with Python 3.11

Issue - State: closed - Opened by skumagai over 1 year ago - 2 comments
Labels: bug

#100 - Print banner to stderr

Pull Request - State: closed - Opened by noamBarkai over 1 year ago

#99 - print banner information to stderr

Pull Request - State: closed - Opened by noamBarkai over 1 year ago

#98 - banner information should be written to stderr not stdout

Issue - State: closed - Opened by noamBarkai over 1 year ago

#97 - CVE-2007-4559 Patch

Pull Request - State: closed - Opened by TrellixVulnTeam about 2 years ago

#96 - >>>output file not available after run is complete.

Issue - State: closed - Opened by cruzan-lab about 2 years ago - 2 comments

#95 - conda-forge recipe does not work

Issue - State: closed - Opened by BoPeng about 2 years ago

#94 - ValueError with EventsBased model

Issue - State: closed - Opened by evanwcarson over 2 years ago - 4 comments

#93 - Why these is no mapSelect?

Issue - State: closed - Opened by BoPeng over 2 years ago - 1 comment

#92 - InstantChangeModel

Issue - State: closed - Opened by BoPeng over 2 years ago - 5 comments

#91 - Simulation of meta-insects population

Issue - State: closed - Opened by MatBiocentis over 2 years ago - 2 comments

#90 - Clonal evolution

Issue - State: closed - Opened by cruzan-lab almost 3 years ago - 10 comments

#89 - Pair crosses in simuPOP

Issue - State: closed - Opened by khornick1 about 3 years ago - 7 comments

#88 - ImportPopulation() and linkage between loci

Issue - State: closed - Opened by ChrystelleDelord over 3 years ago - 4 comments

#87 - SimuPOP and multithreading

Issue - State: closed - Opened by ChrystelleDelord over 3 years ago - 3 comments

#86 - demographic Ne with age structure?

Issue - State: closed - Opened by nclowell about 4 years ago - 2 comments

#85 - got multiple values for argument 'numOffspring'

Issue - State: closed - Opened by nclowell about 4 years ago - 8 comments

#84 - Problem with LD Computation

Issue - State: closed - Opened by EricFriedlander about 4 years ago - 7 comments

#83 - Seed inconsistency between Linux and Windows

Issue - State: closed - Opened by rougerbaptiste about 5 years ago - 1 comment

#82 - Save population with VSPs and continue to evolve

Issue - State: closed - Opened by khornick1 about 5 years ago - 4 comments

#81 - Non-operator form of stat function for Fst

Issue - State: closed - Opened by nclowell about 5 years ago - 3 comments

#80 - Complex assortative mating model

Issue - State: closed - Opened by MrLocuace over 5 years ago - 4 comments

#79 - Maternal inheritance of trait problem

Issue - State: closed - Opened by emmcarr over 5 years ago - 4 comments

#78 - ImportError: No module named '_simuPOP_std'

Issue - State: closed - Opened by sasuke79 over 5 years ago - 8 comments

#77 - Issue with RevertIf

Issue - State: closed - Opened by EricFriedlander over 5 years ago - 2 comments

#76 - Genotype frequencies for multiple loci

Issue - State: closed - Opened by JKHopf over 5 years ago - 2 comments

#75 - Value Error: matting.cpp: 1728

Issue - State: closed - Opened by natashaserrao over 5 years ago - 4 comments

#74 - Determining subpopulation names

Issue - State: closed - Opened by natashaserrao over 5 years ago - 6 comments

#73 - Graphing number of alleles in simuPOP

Issue - State: closed - Opened by natashaserrao over 5 years ago - 3 comments

#72 - Inbreeding in simuPOP

Issue - State: closed - Opened by BoPeng over 5 years ago - 1 comment

#71 - Stop embedding boost

Issue - State: closed - Opened by BoPeng over 5 years ago

#70 - No access of members of vector<boo>::iterator with new libc++

Issue - State: closed - Opened by BoPeng over 5 years ago - 1 comment
Labels: bug, Help needed

#69 - Fix travis tests.

Issue - State: closed - Opened by BoPeng over 5 years ago - 2 comments

#68 - vary fecundity by age

Issue - State: closed - Opened by khornick1 almost 6 years ago - 11 comments

#67 - Simulating two loci

Issue - State: closed - Opened by EricFriedlander almost 6 years ago - 3 comments

#66 - No release or tagged versions in Github

Issue - State: closed - Opened by madsenwattiq almost 6 years ago - 2 comments

#65 - Simulate a declining population that has two VSPs

Issue - State: closed - Opened by evanwcarson about 6 years ago - 4 comments

#64 - syntax error: simuPOP import

Issue - State: closed - Opened by dinhe878 about 6 years ago - 2 comments

#63 - Questions about Temporal effective population size

Issue - State: closed - Opened by MrLocuace about 6 years ago - 2 comments

#62 - Begin lineage with loaded population of different alleleType.

Issue - State: closed - Opened by MrLocuace about 6 years ago - 7 comments

#61 - Monogamous mating without fixed offspring number

Issue - State: closed - Opened by MrLocuace about 6 years ago - 2 comments

#60 - Evolve previously generated genotypes under OutOfAfricaModel

Issue - State: closed - Opened by MrLocuace about 6 years ago - 7 comments

#59 - Virtual subpopulations following OutOfAfrica model?

Issue - State: closed - Opened by MrLocuace about 6 years ago - 19 comments

#58 - get subPop index or name from individual reference

Issue - State: closed - Opened by nclowell over 6 years ago - 3 comments

#57 - The kernel appears to have died. It will restart automatically.

Issue - State: closed - Opened by Hadron74 over 6 years ago - 4 comments

#56 - simuPOP conda installation

Issue - State: closed - Opened by EricFriedlander over 6 years ago - 2 comments

#54 - Simulating several genes in one chromosome

Issue - State: closed - Opened by MrLocuace over 6 years ago - 2 comments

#53 - python parentchooser_ lighter version

Issue - State: closed - Opened by BoPeng over 6 years ago - 3 comments

#52 - simuPOP is not compatible with python 3.6

Issue - State: closed - Opened by bioinfornatics over 6 years ago - 4 comments

#50 - simuOpt.Params - deprecated but alternative?

Issue - State: closed - Opened by avabelieve over 6 years ago - 1 comment

#49 - Rounded position when exporting to MS format

Issue - State: closed - Opened by BoPeng almost 7 years ago - 1 comment

#48 - Calculating and saving average heterozygosity for each generation

Issue - State: closed - Opened by SMartinOSU almost 7 years ago - 3 comments

#47 - Striving for best practices when simulating harvesting

Issue - State: closed - Opened by ChrystelleDelord almost 7 years ago - 3 comments

#46 - How works gen/step with pop.evolve ?

Issue - State: closed - Opened by dbailleul about 7 years ago - 2 comments

#45 - Is it possible to suppress output from a `CSVExporter`?

Issue - State: closed - Opened by ashander about 7 years ago - 2 comments

#44 - Migration operator

Issue - State: closed - Opened by dbailleul about 7 years ago - 4 comments

#43 - How to create new loci in an existing population?

Issue - State: closed - Opened by ashander about 7 years ago - 2 comments

#42 - change weights in heteroMating within each generation

Issue - State: closed - Opened by janavanhu about 7 years ago - 3 comments

#41 - Non-informative error messages re memory demands

Issue - State: closed - Opened by ashander about 7 years ago - 2 comments

#40 - mutation rate

Issue - State: closed - Opened by Amelia-uoft about 7 years ago - 6 comments

#39 - Filter Monomorphic Sites

Issue - State: closed - Opened by snunzi over 7 years ago - 3 comments

#38 - Using pedigrees with overlapping generations

Issue - State: closed - Opened by regevs over 7 years ago - 2 comments

#37 - With more than 500 loci, recombinations occur past the last locus

Issue - State: closed - Opened by petrelharp over 7 years ago - 10 comments

#36 - Variable Age at First Breeding

Issue - State: closed - Opened by snunzi over 7 years ago - 8 comments

#35 - Handle cases where no males/females exist in a *virtual* subpopulation?

Issue - State: closed - Opened by ashander over 7 years ago - 35 comments

#34 - Tracking birth experience

Issue - State: closed - Opened by ghost over 7 years ago - 5 comments

#33 - Honor or warn about unused parameter subPops of standalone HomoMating scheme

Issue - State: closed - Opened by BoPeng over 7 years ago - 3 comments
Labels: enhancement

#32 - Can ordering of parents chosen by SequentialParentsChooser be changed?

Issue - State: closed - Opened by ashander over 7 years ago - 2 comments

#31 - Faster alternative to `DiscardIf` to reduce calls to RNG?

Issue - State: closed - Opened by ashander almost 8 years ago - 12 comments

#30 - Showing subPop membership of individuals in a pedigree

Issue - State: closed - Opened by rogerdoyle almost 8 years ago - 6 comments

#29 - How to show generation of every individual in a simulation

Issue - State: closed - Opened by rogerdoyle almost 8 years ago - 2 comments

#28 - Segmentation fault when providing a non-existent VSP index

Issue - State: closed - Opened by ashander almost 8 years ago - 1 comment

#27 - simuPOP doc conversion process

Issue - State: closed - Opened by BoPeng almost 8 years ago - 6 comments
Labels: discussion

#26 - How to obtain HomoMating within a set of virtual subpopulations

Issue - State: closed - Opened by ashander almost 8 years ago - 8 comments

#25 - Indices for mating schemes? (and advice for debugging within mating schemes)

Issue - State: closed - Opened by ashander almost 8 years ago - 5 comments

#24 - Problem with pedigree.py for srv simulator

Issue - State: closed - Opened by BoPeng almost 8 years ago - 8 comments

#23 - Timeline to 1.1.8 release?

Issue - State: closed - Opened by ashander almost 8 years ago - 6 comments