Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / BlueBrain/snap issues and pull requests

#275 - Inconsistent handling of "integration_method" in simulation config

Issue - State: open - Opened by seirios 18 days ago - 3 comments

#274 - Support morphology containers

Pull Request - State: closed - Opened by mgeplf 20 days ago

#273 - upgrade actions and update python versions

Pull Request - State: closed - Opened by mgeplf about 1 month ago

#272 - Switch to the open-sourced brain-indexer

Pull Request - State: closed - Opened by matz-e about 1 month ago - 2 comments

#271 - Iter_connection on edges for subset of nodes crashes

Issue - State: open - Opened by arnaudon about 2 months ago - 1 comment

#270 - Spikes filter range should be exclusive of the end point

Issue - State: open - Opened by dkeller9 3 months ago - 3 comments

#269 - Fix missing units so tests run again

Pull Request - State: closed - Opened by mgeplf 3 months ago

#268 - Fix: stats module use CircuitNodeId

Pull Request - State: open - Opened by arnaudon 3 months ago - 1 comment

#267 - Fix tests for `numpy>=2`

Pull Request - State: closed - Opened by joni-herttuainen 4 months ago

#265 - add option to ignore datatypes while validating

Pull Request - State: closed - Opened by mgeplf 8 months ago - 1 comment

#264 - Create aliases for `{a,e}fferent_{edges,nodes}`

Pull Request - State: open - Opened by joni-herttuainen 8 months ago - 1 comment
Labels: enhancement

#263 - add kwarg to `firing_rate_histogram` to allow considering gids outside the report

Issue - State: closed - Opened by joni-herttuainen 9 months ago - 4 comments
Labels: enhancement

#262 - Made Edges/EdgePopulation get functions more consistent

Pull Request - State: closed - Opened by joni-herttuainen 9 months ago

#261 - Added notebooks covering node sets and different query methods

Pull Request - State: closed - Opened by joni-herttuainen 9 months ago - 3 comments
Labels: WIP

#260 - Add some basic linting to tests

Pull Request - State: closed - Opened by joni-herttuainen 9 months ago - 1 comment

#259 - Combine `sonata_constants.py` and `bbp.py`

Pull Request - State: closed - Opened by joni-herttuainen 9 months ago - 1 comment

#258 - Make getting morphology directory public in `MorphHelper`

Pull Request - State: closed - Opened by joni-herttuainen 9 months ago - 1 comment

#257 - handle other iterables than list in queries

Pull Request - State: closed - Opened by joni-herttuainen 9 months ago

#256 - `get` and `ids` functions do not work with tuples

Issue - State: closed - Opened by joni-herttuainen 9 months ago
Labels: bug

#255 - Updating copyright year 2024

Pull Request - State: closed - Opened by bbpgithubaudit 9 months ago - 1 comment

#254 - work around libsonata refactor

Pull Request - State: closed - Opened by mgeplf 10 months ago - 1 comment

#253 - 3.0.0 release

Pull Request - State: closed - Opened by edasubert 10 months ago - 1 comment

#252 - drop '.dat' support

Pull Request - State: closed - Opened by joni-herttuainen 11 months ago - 1 comment
Labels: WIP

#251 - Issue reading LFP reports

Pull Request - State: closed - Opened by jorblancoa 12 months ago

#250 - Add include_empty keyword argument

Pull Request - State: open - Opened by HDictus 12 months ago - 8 comments

#249 - 248 inconsistency between edgepopulationiter connections and edgesiter connections

Pull Request - State: closed - Opened by edasubert 12 months ago - 6 comments

#247 - Add further simulation validation

Pull Request - State: closed - Opened by joni-herttuainen 12 months ago - 2 comments
Labels: enhancement

#246 - Simulation validation

Pull Request - State: closed - Opened by joni-herttuainen about 1 year ago - 3 comments

#245 - Reinforce `py311` in read the docs

Pull Request - State: closed - Opened by joni-herttuainen about 1 year ago

#242 - Provide divergence and convergence stats for EdgePopulation

Pull Request - State: closed - Opened by joni-herttuainen about 1 year ago - 1 comment

#241 - Have reports use Simulation Node Sets

Pull Request - State: closed - Opened by joni-herttuainen about 1 year ago

#240 - Add very basic testing for `_plotting.py`, fix a few minor things

Pull Request - State: closed - Opened by joni-herttuainen about 1 year ago - 1 comment

#239 - Fix docstrings: `Nodes.get`, `Edges.get`

Pull Request - State: closed - Opened by joni-herttuainen about 1 year ago - 1 comment

#238 - Fix `cyclic-import` issues

Pull Request - State: closed - Opened by joni-herttuainen about 1 year ago

#237 - Fix: unnecessary warning

Pull Request - State: closed - Opened by joni-herttuainen about 1 year ago - 1 comment

#236 - Convergence and Divergence statistics

Issue - State: closed - Opened by ThibLY about 1 year ago - 1 comment

#235 - Extend circuit node_sets with simulation node sets

Pull Request - State: closed - Opened by joni-herttuainen about 1 year ago - 1 comment

#234 - invalid syntax at bluepysnap/_version.py

Issue - State: closed - Opened by anilbey about 1 year ago - 4 comments

#233 - KeyError: 'node_types_file' on a optional field

Issue - State: closed - Opened by jacquemi-bbp about 1 year ago - 12 comments

#232 - fix dtypes in CircuitIds.index_schema and several deprecation warnings

Pull Request - State: closed - Opened by joni-herttuainen about 1 year ago - 2 comments

#231 - Allow access to simulation inputs and synapse replay files

Pull Request - State: closed - Opened by joni-herttuainen about 1 year ago - 3 comments

#230 - parsing synapse_replay spike files as well

Issue - State: closed - Opened by anilbey over 1 year ago - 5 comments

#229 - Add query key `population_type`

Pull Request - State: closed - Opened by joni-herttuainen over 1 year ago - 3 comments

#228 - Filter by node or edge population `type`

Issue - State: closed - Opened by mgeplf over 1 year ago - 2 comments

#227 - fix warning in a notebook

Pull Request - State: closed - Opened by joni-herttuainen over 1 year ago - 2 comments

#226 - Development side improvements

Pull Request - State: closed - Opened by joni-herttuainen over 1 year ago - 1 comment

#225 - Prepare for release 1.0.7

Pull Request - State: closed - Opened by GianlucaFicarelli over 1 year ago - 1 comment

#224 - Ensure that the report DataFrames have the same schema even when empty

Pull Request - State: closed - Opened by GianlucaFicarelli over 1 year ago - 1 comment

#223 - WIP Convert query to nodesets

Pull Request - State: open - Opened by GianlucaFicarelli over 1 year ago - 1 comment

#222 - Fix CircuitIds.sample() to always return different samples

Pull Request - State: closed - Opened by GianlucaFicarelli over 1 year ago - 1 comment

#221 - update badges

Pull Request - State: closed - Opened by mgeplf over 1 year ago

#220 - Improve performance when querying a population with get() and ids()

Pull Request - State: closed - Opened by GianlucaFicarelli over 1 year ago - 3 comments

#219 - Drop python 3.7 support

Pull Request - State: closed - Opened by GianlucaFicarelli over 1 year ago - 1 comment

#218 - Add t_step parameter to frame reports

Pull Request - State: closed - Opened by GianlucaFicarelli over 1 year ago - 2 comments

#217 - Fixing dtype issues in network.get

Pull Request - State: closed - Opened by joni-herttuainen over 1 year ago - 1 comment

#216 - Produce empty plot when there are no spikes

Pull Request - State: closed - Opened by joni-herttuainen over 1 year ago - 2 comments

#215 - Add python 3.11 tests, don't cap spatial-index version

Pull Request - State: closed - Opened by GianlucaFicarelli over 1 year ago - 1 comment

#214 - firing_rate_histogram is failing when there are no spikes

Issue - State: closed - Opened by genric over 1 year ago - 3 comments

#213 - Use libsonata to resolve node sets

Pull Request - State: closed - Opened by joni-herttuainen over 1 year ago - 5 comments

#212 - Publish version as bluepysnap.__version__

Pull Request - State: closed - Opened by GianlucaFicarelli over 1 year ago

#211 - Cache properties accessing libsonata methods

Pull Request - State: closed - Opened by GianlucaFicarelli over 1 year ago - 3 comments

#210 - fix small bug in an error message

Pull Request - State: closed - Opened by joni-herttuainen over 1 year ago - 1 comment

#209 - fix typo

Pull Request - State: closed - Opened by genric over 1 year ago - 2 comments

#208 - Support lazy loading of nodes attributes

Pull Request - State: closed - Opened by GianlucaFicarelli over 1 year ago - 1 comment

#207 - Use RangeIndex in nodes dataframe and improve _check_id

Pull Request - State: closed - Opened by GianlucaFicarelli over 1 year ago

#206 - Added kwarg: 'raise_missing_property' to 'NodePopulation.get'

Pull Request - State: closed - Opened by joni-herttuainen over 1 year ago - 4 comments

#205 - Set build.os and build.tools.python in .readthedocs.yml

Pull Request - State: closed - Opened by GianlucaFicarelli over 1 year ago

#203 - circ.edges.pair_edges(pre_node, post_node, properties) leads to Error

Issue - State: closed - Opened by MWolfR over 1 year ago - 2 comments

#202 - circ.edges.afferent_edges(node_ids[0]) fills my memory

Issue - State: open - Opened by markovg over 1 year ago - 2 comments

#201 - Nghi dev

Pull Request - State: closed - Opened by NghiV1412 over 1 year ago

#200 - Index of the output of NodePopulation.get now has a name.

Pull Request - State: closed - Opened by MWolfR over 1 year ago - 3 comments

#199 - Workaround to issue https://github.com/BlueBrain/snap/issues/198

Pull Request - State: closed - Opened by markovg over 1 year ago - 1 comment

#196 - Reduced the node's selection before getting properties

Pull Request - State: closed - Opened by mgeplf over 1 year ago - 1 comment

#195 - Performance issues when accessing `positions` for large node populations

Issue - State: closed - Opened by matz-e over 1 year ago - 4 comments

#194 - NSETM-2114 partial circuit config

Pull Request - State: closed - Opened by edasubert over 1 year ago - 3 comments

#192 - Added intersection() method to circuit ids

Pull Request - State: closed - Opened by HDictus over 1 year ago - 6 comments

#191 - fix issue where manifest could be empty

Pull Request - State: closed - Opened by mgeplf over 1 year ago

#190 - add pickling support to most classes with caches

Pull Request - State: closed - Opened by mgeplf over 1 year ago - 3 comments

#189 - Add python 3.10 tests, and update GitHub actions

Pull Request - State: closed - Opened by GianlucaFicarelli over 1 year ago - 1 comment

#188 - Update changelog to prepare for release 1.0.4

Pull Request - State: closed - Opened by GianlucaFicarelli over 1 year ago

#187 - Remove NeuroM leftovers

Pull Request - State: closed - Opened by GianlucaFicarelli over 1 year ago - 1 comment

#186 - Fixing the issue with conflicting property dtypes

Pull Request - State: closed - Opened by joni-herttuainen over 1 year ago - 7 comments

#185 - set recursive autodoc generation to include 'nodes' and 'edges'

Pull Request - State: closed - Opened by joni-herttuainen over 1 year ago - 3 comments

#184 - Teach schemas to return datatypes for attributes for the nodes and edges

Pull Request - State: closed - Opened by mgeplf over 1 year ago - 1 comment

#183 - documentation not produced for Edges and Nodes

Issue - State: closed - Opened by mgeplf over 1 year ago - 1 comment

#182 - Renamed 'population_config' to 'config'

Pull Request - State: closed - Opened by joni-herttuainen over 1 year ago - 1 comment

#181 - Simulation: retrieve connection_overrides in the order they are read from the file.

Issue - State: closed - Opened by anilbey almost 2 years ago - 9 comments

#180 - HOTFIX: omit dtypes when doing nodes.get or edges.get [NSETM-2112]

Pull Request - State: closed - Opened by joni-herttuainen almost 2 years ago - 3 comments

#179 - Access population config from the populations

Pull Request - State: closed - Opened by joni-herttuainen almost 2 years ago - 4 comments

#178 - Nsetm 2101 split files

Pull Request - State: closed - Opened by edasubert almost 2 years ago - 1 comment

#177 - spatial index

Pull Request - State: closed - Opened by edasubert almost 2 years ago - 4 comments

#176 - Use nexus resource for simulation notebooks

Pull Request - State: open - Opened by joni-herttuainen almost 2 years ago - 1 comment