Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / BlueBrain/morph-tool issues and pull requests

#134 - make sdist smaller by not including tests and doc

Pull Request - State: open - Opened by mgeplf 12 days ago

#132 - Feat: Drop morphdb duplicates in __add__

Pull Request - State: closed - Opened by arnaudon 3 months ago

#131 - Use release/v1 in gh-action-pypi-publish

Pull Request - State: closed - Opened by eleftherioszisis 6 months ago

#129 - Updating copyright year 2024

Pull Request - State: closed - Opened by bbpgithubaudit 10 months ago

#127 - Fix several typos

Pull Request - State: closed - Opened by adrien-berchet 10 months ago

#126 - Feat: Ensure area is same as nrn for point swc soma

Pull Request - State: closed - Opened by arnaudon 10 months ago - 7 comments

#125 - Fix equal point in SOMA_CYLINDERS in SWC converter

Pull Request - State: closed - Opened by adrien-berchet 11 months ago

#124 - Fix perimeters in converter

Pull Request - State: closed - Opened by adrien-berchet 11 months ago

#123 - Fix converter.from_swc

Pull Request - State: closed - Opened by adrien-berchet 12 months ago

#122 - make tests compatible with having correct soma

Pull Request - State: closed - Opened by mgeplf 12 months ago

#121 - Fix weird swc soma

Pull Request - State: closed - Opened by arnaudon about 1 year ago

#120 - Drop support of Py37

Pull Request - State: closed - Opened by adrien-berchet over 1 year ago - 3 comments

#119 - Assign the correct soma types when they are converted

Pull Request - State: closed - Opened by mgeplf over 1 year ago - 12 comments

#118 - draft: Hack to fix swc converter

Pull Request - State: closed - Opened by arnaudon over 1 year ago - 1 comment

#117 - issue in soma converter form swc

Issue - State: closed - Opened by arnaudon over 1 year ago - 17 comments

#116 - fix convert example

Pull Request - State: closed - Opened by mgeplf over 1 year ago - 1 comment

#115 - Outdated examples in README.md

Issue - State: closed - Opened by 1uc over 1 year ago - 1 comment

#114 - updated doc for simplify

Pull Request - State: closed - Opened by mgeplf over 1 year ago - 1 comment

#113 - Add python3.10 in ci and make updates

Pull Request - State: closed - Opened by eleftherioszisis over 1 year ago

#112 - Fix dendrogram jittered dataframe not include group index

Pull Request - State: closed - Opened by eleftherioszisis over 1 year ago - 2 comments

#111 - Add Douglas-Peucker line simplification for morphologies

Pull Request - State: closed - Opened by mgeplf over 1 year ago - 2 comments

#110 - Add morph simplifier?

Issue - State: closed - Opened by arnaudon over 1 year ago - 6 comments

#109 - Fix language detection

Pull Request - State: closed - Opened by adrien-berchet about 2 years ago - 3 comments

#108 - amira format converter

Pull Request - State: closed - Opened by arnaudon over 2 years ago - 3 comments

#107 - Use soma.center in the align function

Pull Request - State: closed - Opened by adrien-berchet over 2 years ago

#106 - could you release?

Issue - State: closed - Opened by arnaudon over 2 years ago

#105 - Allow both neurom v3 and v4

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago

#104 - oblique manipulation tools

Pull Request - State: open - Opened by arnaudon over 2 years ago

#103 - fix lint

Pull Request - State: closed - Opened by arnaudon over 2 years ago - 1 comment

#102 - Fix soma contour conversion

Pull Request - State: closed - Opened by mgeplf over 2 years ago

#101 - align wrt to soma (not center of mass)

Pull Request - State: closed - Opened by arnaudon over 2 years ago - 6 comments

#100 - convert amira format

Issue - State: closed - Opened by arnaudon over 2 years ago - 11 comments

#99 - Updating copyright year 2022

Pull Request - State: closed - Opened by bbpgithubaudit over 2 years ago

#98 - Setup pre-commit

Pull Request - State: closed - Opened by adrien-berchet over 2 years ago

#97 - Add the possibility to specify the tuft_percent in apical_point_secti…

Pull Request - State: closed - Opened by alberto-antonietti over 2 years ago - 1 comment

#96 - Adding banner to README

Pull Request - State: closed - Opened by alex4200 almost 3 years ago - 14 comments

#95 - convert segments to sections

Pull Request - State: open - Opened by arnaudon almost 3 years ago - 1 comment

#94 - allow for neurite_type in neuron to neurom section id conversion

Pull Request - State: open - Opened by arnaudon almost 3 years ago - 2 comments

#93 - enable python 3.10 when NEURON is released

Issue - State: closed - Opened by mgeplf almost 3 years ago - 2 comments

#92 - Drop support of Python <= 3.6

Pull Request - State: closed - Opened by adrien-berchet almost 3 years ago - 5 comments

#91 - Improve doc

Pull Request - State: closed - Opened by adrien-berchet almost 3 years ago

#90 - resistance distance on morphologies

Pull Request - State: open - Opened by arnaudon about 3 years ago

#89 - fix pylint: `unspecified-encoding` and `consider-using-f-string`

Pull Request - State: closed - Opened by mgeplf about 3 years ago - 1 comment

#88 - add authors

Pull Request - State: closed - Opened by mgeplf about 3 years ago

#87 - format documentation

Pull Request - State: closed - Opened by asanin-epfl about 3 years ago - 2 comments

#86 - update NeuroM dependency to 3.0.0

Pull Request - State: closed - Opened by asanin-epfl over 3 years ago

#85 - nosetests to pytest

Pull Request - State: closed - Opened by asanin-epfl over 3 years ago - 1 comment

#84 - use isclose in spatial

Pull Request - State: closed - Opened by arnaudon over 3 years ago - 9 comments

#83 - move tests to pytest

Issue - State: closed - Opened by asanin-epfl over 3 years ago - 1 comment

#82 - Draw morphology with synapses

Pull Request - State: closed - Opened by asanin-epfl over 3 years ago - 4 comments

#81 - Update CHANGELOG

Pull Request - State: closed - Opened by adrien-berchet over 3 years ago

#80 - Fix compatibility with numpy>=1.21

Pull Request - State: closed - Opened by adrien-berchet over 3 years ago

#79 - missing entries of 2.6.0 and 2.6.1 in CHANGELOG

Pull Request - State: closed - Opened by asanin-epfl over 3 years ago

#77 - a better regex for detection of section cut leaves

Pull Request - State: closed - Opened by asanin-epfl over 3 years ago - 1 comment

#76 - tag parser function

Pull Request - State: closed - Opened by arnaudon over 3 years ago - 2 comments

#75 - Add `sanitize` to folder convert

Pull Request - State: closed - Opened by mgeplf over 3 years ago

#74 - delete obsolete comment

Pull Request - State: closed - Opened by asanin-epfl over 3 years ago

#73 - introduce CHANGELOG

Pull Request - State: closed - Opened by asanin-epfl over 3 years ago

#72 - Fix apical_point_section_segment and point_to_section_segment

Pull Request - State: closed - Opened by asanin-epfl over 3 years ago

#71 - fix the old morphio and neurom versions

Pull Request - State: closed - Opened by asanin-epfl over 3 years ago

#70 - dendrite subtypes handling

Pull Request - State: open - Opened by arnaudon over 3 years ago

#69 - Allow to pass numpy rangom generators to graft_axon

Pull Request - State: closed - Opened by adrien-berchet over 3 years ago - 5 comments

#68 - NEURON soma area is not working

Issue - State: closed - Opened by arnaudon over 3 years ago - 1 comment

#67 - update copyright

Pull Request - State: closed - Opened by mgeplf over 3 years ago

#66 - Introduce 'sanitize' flag for conversion

Pull Request - State: closed - Opened by asanin-epfl over 3 years ago - 1 comment

#65 - Fix compatibility with NeuroM>=2.1

Pull Request - State: closed - Opened by adrien-berchet over 3 years ago - 3 comments

#64 - Correct conversion to .swc

Issue - State: closed - Opened by asanin-epfl over 3 years ago - 5 comments

#63 - reduce the dependencies by putting bluepyopt behind `nrn` feature

Pull Request - State: closed - Opened by mgeplf over 3 years ago

#62 - use NeuroM v2

Pull Request - State: closed - Opened by asanin-epfl over 3 years ago - 1 comment

#61 - MorphLoader can now return mutable Morphology objects

Pull Request - State: closed - Opened by adrien-berchet over 3 years ago - 5 comments

#60 - Fix NestedPool for py38

Pull Request - State: closed - Opened by adrien-berchet over 3 years ago - 2 comments

#59 - iter_morphology output is unsorted

Issue - State: closed - Opened by arnaudon over 3 years ago - 11 comments

#58 - Fix resampling duplicate point because of numerical imprecision

Pull Request - State: closed - Opened by eleftherioszisis over 3 years ago - 1 comment

#57 - Introduce installation extras to lighten the package as dependency by default

Pull Request - State: closed - Opened by asanin-epfl over 3 years ago - 4 comments

#56 - fix duplicate point

Pull Request - State: closed - Opened by arnaudon over 3 years ago - 1 comment

#55 - improve feature

Pull Request - State: closed - Opened by arnaudon over 3 years ago - 6 comments

#54 - Introduce axon point module

Pull Request - State: closed - Opened by arnaudon over 3 years ago - 4 comments

#53 - Make MorphDB.df hashable

Pull Request - State: closed - Opened by wizmer almost 4 years ago

#52 - make MorphDB.df hashable

Issue - State: closed - Opened by arnaudon almost 4 years ago - 2 comments

#51 - automatic morphology alignement

Pull Request - State: closed - Opened by arnaudon almost 4 years ago - 8 comments

#50 - Use new signature for morphio.Morphology.version

Pull Request - State: closed - Opened by wizmer almost 4 years ago

#49 - Stop using h5v2 in unit tests

Pull Request - State: closed - Opened by wizmer almost 4 years ago - 2 comments

#48 - h5py issue with new version

Issue - State: closed - Opened by arnaudon almost 4 years ago - 2 comments

#47 - marker helper

Pull Request - State: closed - Opened by arnaudon almost 4 years ago - 5 comments

#46 - Fix MorphIO bump

Pull Request - State: closed - Opened by wizmer almost 4 years ago

#45 - Make CI actually run `tox`

Pull Request - State: closed - Opened by wizmer almost 4 years ago

#44 - 📝 Improve morph-tool diff

Pull Request - State: closed - Opened by wizmer almost 4 years ago

#43 - morphdb

Pull Request - State: closed - Opened by arnaudon almost 4 years ago

#42 - first version of MorphAPI

Pull Request - State: closed - Opened by arnaudon almost 4 years ago - 1 comment

#41 - Fix scipy breaking change in 1.6.0

Pull Request - State: closed - Opened by wizmer almost 4 years ago - 1 comment

#40 - Add morphology resampling

Pull Request - State: closed - Opened by eleftherioszisis almost 4 years ago

#39 - neurondb_dataframe handles empty <morphology></morphology> tags

Pull Request - State: closed - Opened by wizmer almost 4 years ago

#38 - cleanup some of the tests

Pull Request - State: closed - Opened by mgeplf about 4 years ago

#37 - iint type in CLI convert --ncores

Pull Request - State: closed - Opened by arnaudon about 4 years ago

#36 - SGA3 acknowledgement

Pull Request - State: closed - Opened by jdcourcol about 4 years ago

#35 - Choose the first axon in case of multiple axons [NSETM-1215]

Pull Request - State: closed - Opened by GianlucaFicarelli about 4 years ago - 1 comment