BlueBrain/libsonata issues and pull requests

#380 - Only run the C++ unittests once

Pull Request - State: closed - Opened by mgeplf 10 days ago

#379 - Prepare for HighFive v3.

Pull Request - State: open - Opened by 1uc 12 days ago

#378 - Tests seem to run twice.

Issue - State: closed - Opened by 1uc 12 days ago - 1 comment

#377 - Materializing nodesets with integer attributes.

Issue - State: open - Opened by 1uc 12 days ago

#376 - SimulationConfig: use names for integration_method

Pull Request - State: closed - Opened by WeinaJi 18 days ago

#372 - Use std::filesystem

Pull Request - State: open - Opened by matz-e about 2 months ago

#371 - Building / pip installing does not appear to work on Windows 10.

Issue - State: open - Opened by markovg about 2 months ago - 1 comment

#370 - Bump fmt to 11.0.2 to be equivalent to nrn

Pull Request - State: closed - Opened by alkino 2 months ago - 3 comments

#369 - Update upload/download action to `v4`.

Pull Request - State: closed - Opened by 1uc 3 months ago

#368 - Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: dependencies

#367 - Add support for sinusoidal inputs in sonata configs

Pull Request - State: closed - Opened by jorblancoa 4 months ago - 2 comments

#366 - update hdf5 download location

Pull Request - State: closed - Opened by mgeplf 4 months ago

#365 - Update HighFive to 2.10.0.

Pull Request - State: closed - Opened by 1uc 4 months ago - 1 comment

#364 - Performance regression materializing `Selection`

Issue - State: closed - Opened by mgeplf 4 months ago - 7 comments

#363 - Retrieve spike time units in SpikePopulation

Pull Request - State: closed - Opened by jorblancoa 4 months ago

#362 - Retrieve spike time units in SpikePopulation

Issue - State: closed - Opened by seirios 4 months ago - 1 comment

#361 - Absolute/RelativeShotNoise input: replace amp_cv with relative_skew

Pull Request - State: closed - Opened by WeinaJi 4 months ago - 3 comments

#360 - include fmt/ranges.h for using fmt::join()

Pull Request - State: closed - Opened by tchaikov 4 months ago - 2 comments

#359 - SimulationConfig: modifications as a list to preserve the order

Pull Request - State: closed - Opened by WeinaJi 5 months ago

#358 - SimulationConfig: remove amp_end from pulse input

Pull Request - State: closed - Opened by WeinaJi 5 months ago

#357 - upgrade to pybind v2.12.0

Pull Request - State: closed - Opened by mgeplf 5 months ago

#356 - Improve report reader node filter performances.

Pull Request - State: closed - Opened by Adrien4193 6 months ago

#355 - Build static macos and linux wheels

Pull Request - State: closed - Opened by mgeplf 7 months ago

#354 - SimulationConfig: Adds "represents_physical_electrode" field in "inputs" section

Pull Request - State: closed - Opened by jorblancoa 7 months ago - 1 comment

#353 - Allow Set Attributes

Issue - State: closed - Opened by KeremKurban 8 months ago - 1 comment

#352 - Double free() of NodePopulationProperties

Issue - State: closed - Opened by a-vartenkov 8 months ago - 2 comments

#351 - Simulation config: synapse_replay input files must be .h5

Pull Request - State: closed - Opened by WeinaJi 9 months ago

#350 - Updating copyright year 2024

Pull Request - State: closed - Opened by bbpgithubaudit 10 months ago

#349 - Updating copyright year 2024

Pull Request - State: closed - Opened by bbpgithubaudit 10 months ago

#348 - Updating copyright year 2024

Pull Request - State: closed - Opened by bbpgithubaudit 10 months ago

#347 - Updating copyright year 2024

Pull Request - State: closed - Opened by bbpgithubaudit 10 months ago

#346 - Updating copyright year 2024

Pull Request - State: closed - Opened by bbpgithubaudit 10 months ago

#345 - Make documentation available for Python API

Pull Request - State: closed - Opened by mgeplf 10 months ago - 1 comment

#344 - match h5 version to h5py's for macos

Pull Request - State: closed - Opened by mgeplf 10 months ago

#343 - Update HighFive SHA to `2.9.0`.

Pull Request - State: closed - Opened by 1uc 10 months ago - 2 comments

#342 - No brews for you

Pull Request - State: closed - Opened by mgeplf 11 months ago

#341 - V0.1.25 changelog

Pull Request - State: closed - Opened by mgeplf 11 months ago

#340 - SimulationConfig: spike_threshold is float

Pull Request - State: closed - Opened by WeinaJi 11 months ago - 1 comment

#339 - add SimulationConfig to all

Pull Request - State: closed - Opened by mgeplf 11 months ago - 1 comment

#338 - Make sure defaults for condition blocks and others are applied

Pull Request - State: closed - Opened by mgeplf 11 months ago

#337 - behavioural difference btw. missing condition block and condition block with a missing entry

Issue - State: closed - Opened by anilbey 11 months ago - 4 comments

#336 - Remove `CMAKE_SKIP_INSTALL_ALL_DEPENDENCY`.

Pull Request - State: closed - Opened by 1uc 12 months ago - 1 comment

#335 - Allow `sonata::sonata_{shared,static}`.

Pull Request - State: closed - Opened by 1uc 12 months ago - 1 comment

#334 - Build failure on Ubuntu 20.04.

Issue - State: closed - Opened by 1uc 12 months ago - 1 comment

#333 - Check more variants of CMake invocations.

Pull Request - State: closed - Opened by 1uc 12 months ago - 1 comment

#332 - Update `pybind11==2.11.1`.

Pull Request - State: closed - Opened by 1uc 12 months ago

#331 - Run test against py312.

Pull Request - State: closed - Opened by 1uc 12 months ago

#330 - Deduplicate CI.

Pull Request - State: closed - Opened by 1uc 12 months ago

#329 - CI appears to be running twice.

Issue - State: closed - Opened by 1uc 12 months ago - 1 comment

#328 - Build failure on Ubuntu 20.04.

Issue - State: closed - Opened by 1uc 12 months ago - 2 comments

#327 - Mimic Ubuntu users that installed pHDF5.

Pull Request - State: closed - Opened by 1uc 12 months ago - 1 comment

#326 - Support collective reader.

Pull Request - State: closed - Opened by 1uc 12 months ago - 1 comment

#325 - Update .gitignore.

Pull Request - State: closed - Opened by 1uc 12 months ago

#324 - Inconsistency in `init.py`.

Issue - State: closed - Opened by 1uc 12 months ago - 1 comment

#323 - Decide if a CanonicalSelection type would reduce pre-condition errors

Issue - State: open - Opened by mgeplf 12 months ago

#322 - Non-empty selection of empty dataset.

Issue - State: open - Opened by 1uc 12 months ago

#321 - update to require using CMake 3.16

Pull Request - State: closed - Opened by mgeplf 12 months ago

#320 - Prevent pytest from picking up pybind11 tests.

Pull Request - State: closed - Opened by 1uc almost 1 year ago

#319 - Use `using Range = std::array<Value, 2>`.

Pull Request - State: closed - Opened by 1uc almost 1 year ago - 2 comments

#318 - Update HighFive to v2.8.0.

Pull Request - State: closed - Opened by 1uc about 1 year ago

#317 - work around brew erroring in github actions

Pull Request - State: closed - Opened by mgeplf about 1 year ago

#316 - be neighborly, do not use `using` in headers

Pull Request - State: closed - Opened by mgeplf about 1 year ago

#315 - Refactor _readSelection.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 1 comment

#314 - Refactor edge_index::resolve.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 1 comment

#313 - Fix brews 2to3 symlinking issue.

Pull Request - State: closed - Opened by 1uc about 1 year ago

#312 - No 'brew update'.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 1 comment

#311 - Sanity check.

Pull Request - State: closed - Opened by 1uc about 1 year ago

#310 - Fix brews 2to3 symlinking issue.

Pull Request - State: closed - Opened by 1uc about 1 year ago

#309 - HDF5 MPI-collective I/O.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 1 comment

#308 - Deprecation warnings about CMake < 3.5.

Issue - State: closed - Opened by 1uc about 1 year ago - 4 comments

#307 - Inject dataset reading via `Hdf5Reader`.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 6 comments

#306 - Move `Selection` to its own header.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 1 comment

#305 - API for configuring HDF5 properties.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 1 comment

#304 - Simplify HighFive usage.

Pull Request - State: closed - Opened by 1uc about 1 year ago

#303 - Simplify single group check.

Pull Request - State: closed - Opened by 1uc about 1 year ago

#302 - Typos.

Pull Request - State: closed - Opened by 1uc about 1 year ago

#301 - Possibly avoid `using` in public headers.

Issue - State: closed - Opened by 1uc about 1 year ago - 2 comments

#300 - Simplify `Selection::Selection`.

Pull Request - State: closed - Opened by 1uc about 1 year ago

#299 - Allow disabling coverage for 'Debug'.

Pull Request - State: closed - Opened by 1uc about 1 year ago

#298 - Optimize loading `?fferent_edges`.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 3 comments

#297 - Proposal change type of `Range`.

Issue - State: closed - Opened by 1uc about 1 year ago - 14 comments

#296 - Add `CMAKE_BUILD_PARALLEL_LEVEL=2` when building wheels.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 2 comments

#295 - Formatting CI prints diff on failure.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 2 comments

#294 - Use `RawIndex = std::vector<std::array<.., 2>>`.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 1 comment

#293 - Improvement for `Selection` documentation.

Issue - State: open - Opened by 1uc about 1 year ago - 1 comment

#292 - circuit and simulation config use different binding names for node_sets_file

Issue - State: open - Opened by mgeplf about 1 year ago

#291 - Build failure with `intel-mpi`.

Issue - State: closed - Opened by 1uc about 1 year ago - 7 comments

#290 - small cosmetic fixes

Pull Request - State: closed - Opened by mgeplf about 1 year ago

#289 - Fix toJSON incorrect empty, node_id and compound problems

Pull Request - State: closed - Opened by mgeplf about 1 year ago - 1 comment

#288 - bug: `NodeSets.toJSON()` produces invalid JSON

Issue - State: closed - Opened by joni-herttuainen about 1 year ago - 4 comments
Labels: bug

#287 - SimulationConfig: node_sets_file default is empty

Pull Request - State: closed - Opened by WeinaJi about 1 year ago

#286 - Skip Python 3.12 RC wheel builds

Pull Request - State: closed - Opened by mgeplf over 1 year ago

#285 - Return a structured array for the spikes in python

Pull Request - State: closed - Opened by jorblancoa over 1 year ago - 18 comments

#284 - Add missing reversal property of shotnoise family

Pull Request - State: closed - Opened by jorblancoa over 1 year ago

#283 - initial test of NodeSet extend

Pull Request - State: closed - Opened by mgeplf over 1 year ago
Labels: WIP

#282 - disable py37

Pull Request - State: closed - Opened by mgeplf over 1 year ago

#281 - test for completely empty datasets

Pull Request - State: closed - Opened by mgeplf over 1 year ago

#280 - Move std::vector methods above scalar methods in bindings

Pull Request - State: closed - Opened by mgeplf over 1 year ago - 1 comment

#279 - DeprecationWarning with numpy 1.25: Conversion of an array with ndim > 0 to a scalar is deprecated

Issue - State: open - Opened by GianlucaFicarelli over 1 year ago - 2 comments

#278 - bump HighFive to v2.7.1

Pull Request - State: closed - Opened by mgeplf over 1 year ago - 3 comments

GitHub / BlueBrain/libsonata issues and pull requests