BlueBrain/atlas-annotation issues and pull requests

#56 - Remove `atlas_alignment_meter` from `setup.py`

Pull Request - State: closed - Opened by EmilieDel over 1 year ago

#55 - Remove atlas_alignment_meter from setup.py requires

Pull Request - State: closed - Opened by EmilieDel over 1 year ago

#54 - Fix typing and experiments scripts

Pull Request - State: closed - Opened by EmilieDel about 2 years ago

#53 - Add `mypy` checks

Pull Request - State: closed - Opened by EmilieDel about 2 years ago

#52 - Remove `atlas_remap`

Pull Request - State: closed - Opened by EmilieDel about 2 years ago

#51 - Clear all `init.py` files

Pull Request - State: closed - Opened by EmilieDel about 2 years ago

#50 - Add new remapper

Pull Request - State: closed - Opened by jankrepl about 2 years ago

#49 - Add all supported dtypes by ANTsPy

Pull Request - State: closed - Opened by jankrepl about 2 years ago

#48 - Fix bug

Pull Request - State: closed - Opened by EmilieDel about 2 years ago

#47 - Bug in `load_volume`

Issue - State: closed - Opened by jankrepl about 2 years ago

#46 - Support uint32 volumes in `register` and `transform` and remove remapping logic

Pull Request - State: closed - Opened by jankrepl about 2 years ago

#45 - Allow the user to decide for remapping

Pull Request - State: closed - Opened by EmilieDel about 2 years ago

#44 - Speed up remapping of labels

Issue - State: closed - Opened by jankrepl about 2 years ago - 1 comment

#43 - Integrate labels remapping for atlas registration

Pull Request - State: closed - Opened by EmilieDel about 2 years ago

#42 - Remove dependence on `atlalign`

Pull Request - State: closed - Opened by jankrepl about 2 years ago

#41 - Consider dropping dependence on `atlalign`

Issue - State: closed - Opened by jankrepl about 2 years ago - 1 comment

#40 - Add experiments scripts

Pull Request - State: closed - Opened by EmilieDel about 2 years ago - 1 comment

#39 - Updating copyright year 2022

Pull Request - State: closed - Opened by bbpgithubaudit about 2 years ago

#38 - Add description to every DVC step

Pull Request - State: closed - Opened by EmilieDel about 2 years ago

#37 - Track merged volumes with DVC

Pull Request - State: closed - Opened by EmilieDel about 2 years ago

#36 - Clear out all `init.py`

Issue - State: closed - Opened by Stannislav over 2 years ago

#35 - Improve entropy computation

Pull Request - State: closed - Opened by Stannislav over 2 years ago

#34 - Add banner

Pull Request - State: closed - Opened by EmilieDel over 2 years ago

#33 - Add `mypy` checks

Issue - State: closed - Opened by EmilieDel over 2 years ago - 1 comment

#32 - Keep track of displacement fields along several registrations

Issue - State: open - Opened by EmilieDel over 2 years ago

#31 - Explain metrics from `experiments/eval.py` in `README.md`

Issue - State: open - Opened by EmilieDel over 2 years ago

#30 - Implement Smoothing Quality

Pull Request - State: open - Opened by EmilieDel over 2 years ago

#29 - Handle evaluation when label is absent

Pull Request - State: closed - Opened by EmilieDel over 2 years ago

#28 - Improve evaluation logic

Pull Request - State: open - Opened by EmilieDel over 2 years ago

#27 - Expand python versions

Pull Request - State: closed - Opened by EmilieDel over 2 years ago

#26 - Create evaluation module

Pull Request - State: closed - Opened by EmilieDel over 2 years ago

#25 - Enhance region meta

Pull Request - State: closed - Opened by Stannislav over 2 years ago

#24 - Use fast merging in DVC

Issue - State: open - Opened by Stannislav over 2 years ago

#23 - Use `atlas_remap` in `remap_labels`

Issue - State: closed - Opened by Stannislav over 2 years ago

#22 - Upgrade the `atldld` dependency

Pull Request - State: closed - Opened by EmilieDel over 2 years ago

#21 - Optimized fast atlas merging

Pull Request - State: closed - Opened by Stannislav over 2 years ago

#20 - Upgrade the `atldld` dependency

Issue - State: closed - Opened by Stannislav over 2 years ago

#19 - Mention installation from PyPI in README + RTD

Issue - State: open - Opened by Stannislav over 2 years ago

#18 - Fill docs

Pull Request - State: closed - Opened by Stannislav over 2 years ago

#17 - Improve docs and CI

Pull Request - State: closed - Opened by Stannislav over 2 years ago

#16 - Fix API docs

Pull Request - State: closed - Opened by Stannislav over 2 years ago

#15 - Configure RTD

Pull Request - State: closed - Opened by Stannislav over 2 years ago - 1 comment

#14 - Fix bug in `ants.transform`

Pull Request - State: closed - Opened by EmilieDel over 2 years ago

#13 - Add some examples to README.md

Pull Request - State: closed - Opened by EmilieDel over 2 years ago

#12 - Consider expanding Python Versions

Issue - State: closed - Opened by EmilieDel over 2 years ago

#11 - Mention python version in installation requirements

Pull Request - State: closed - Opened by Stannislav over 2 years ago

#10 - Reconsider using `nrrd` in `DVC`

Issue - State: open - Opened by EmilieDel over 2 years ago

#9 - Add info in README.md

Pull Request - State: closed - Opened by EmilieDel over 2 years ago

#8 - Integrate the jaggedness metric

Issue - State: closed - Opened by EmilieDel over 2 years ago

#7 - Add description

Pull Request - State: closed - Opened by Stannislav over 2 years ago

#6 - Add CONTRIBUTING.md

Pull Request - State: closed - Opened by EmilieDel over 2 years ago

#5 - Add AUTHORS.txt

Pull Request - State: closed - Opened by Stannislav over 2 years ago

#4 - Add the LICENSE.txt file

Pull Request - State: closed - Opened by Stannislav over 2 years ago

#3 - Create documentation

Pull Request - State: closed - Opened by EmilieDel over 2 years ago

#2 - Improve README.md

Pull Request - State: closed - Opened by EmilieDel over 2 years ago

#1 - Run CI with Github actions

Pull Request - State: closed - Opened by EmilieDel over 2 years ago

GitHub / BlueBrain/atlas-annotation issues and pull requests