BlueBrain/NeuroM issues and pull requests

#1031 - Fix the order of types checked for AcD dendrites.

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago

#1030 - Morphology level radial distance features use the soma as reference point

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 3 comments
Labels: version 4.0

#1029 - Updating copyright year 2022

Pull Request - State: closed - Opened by bbpgithubaudit over 2 years ago

#1028 - Updating copyright year 2022

Pull Request - State: closed - Opened by bbpgithubaudit over 2 years ago - 1 comment

#1027 - Refactor mixed subtree tests

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago

#1026 - Remove deprecations

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 4 comments
Labels: version 4.0

#1025 - Make fork iterators homogeneous

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 3 comments
Labels: version 4.0

#1024 - Exit early if no points, to avoid hull warning

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago

#1023 - Implement new feature of length above soma

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 1 comment

#1022 - New feature: percentage of neuronal mass with respect to soma

Issue - State: closed - Opened by lidakanari over 2 years ago - 3 comments

#1021 - Allow using lists of kwargs in morph_stats features

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 3 comments

#1020 - Fix: kwargs are unnecessarily updated in extract_stats

Pull Request - State: closed - Opened by adrien-berchet over 2 years ago

#1019 - Explicitly populate feature dictionaries with all available features.

Pull Request - State: open - Opened by eleftherioszisis over 2 years ago - 6 comments

#1018 - Return nan if no points found in shape features

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 1 comment

#1017 - Sort principal direction extents in descending order

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago

#1016 - Update `neurom.features.get` docstring with available builtin features

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 5 comments

#1015 - Is there a way to define optional arguments from morph_stats application?

Issue - State: closed - Opened by lidakanari over 2 years ago - 2 comments

#1014 - NeuroM "get" does not list features in help.

Issue - State: closed - Opened by lidakanari over 2 years ago
Labels: enhancement

#1013 - Shape related features

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago

#1012 - New feature: shape factor

Issue - State: closed - Opened by lidakanari over 2 years ago - 1 comment
Labels: new feature

#1011 - New feature: circularity

Issue - State: closed - Opened by lidakanari over 2 years ago - 1 comment
Labels: new feature

#1010 - New feature: aspect ratio

Issue - State: closed - Opened by lidakanari over 2 years ago - 2 comments
Labels: new feature

#1009 - Maximal direction extent

Issue - State: closed - Opened by eleftherioszisis over 2 years ago - 2 comments

#1008 - Fix principal direction extent

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 5 comments

#1007 - Bug in principal direction extent

Issue - State: closed - Opened by eleftherioszisis over 2 years ago - 4 comments
Labels: bug

#1006 - Generalize partition asymmetry

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 1 comment

#1005 - Refactor features

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 1 comment

#1004 - Mismatching behavior between segment and section taper rates

Issue - State: closed - Opened by eleftherioszisis over 2 years ago - 1 comment
Labels: bug

#1003 - Standardize flatten iterator recipe

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 1 comment

#1002 - Make deprecation warnings respect pre-existing warnings configuration

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 2 comments

#1001 - Fix partition_asymmetry Uylings to not throw for bifurcations with leaves

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 1 comment

#1000 - Is `partition_asymmetry` with `Uylings` variant usable?

Issue - State: closed - Opened by eleftherioszisis over 2 years ago - 6 comments
Labels: question

#999 - Remove duplicate points in principal_direction_extents

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 1 comment

#998 - `principal_direction_extents` are biased by duplicate points

Issue - State: closed - Opened by eleftherioszisis over 2 years ago - 1 comment
Labels: bug

#997 - Inappropriate `warnings.simplefilter`

Issue - State: closed - Opened by Stannislav over 2 years ago - 14 comments

#996 - Add volume density at the morphology level

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 1 comment

#995 - `volume_density` is not calculated correctly at the morphology level

Issue - State: closed - Opened by eleftherioszisis over 2 years ago - 2 comments
Labels: bug

#994 - Fix doc of neurom.core.morphology.Neurite.iter_sections method

Pull Request - State: closed - Opened by adrien-berchet over 2 years ago - 3 comments

#993 - Minor housekeeping

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 1 comment

#992 - Make output file in `morph_check` required

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 1 comment

#991 - Fail gracefully if no output file option is given to `neurom check`

Issue - State: closed - Opened by sanjayankur31 over 2 years ago - 2 comments

#990 - Fix `sholl_frequency` for NA neurite_type

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 3 comments

#989 - Use soma center in sholl_frequency distance calculation

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 3 comments

#988 - `sholl_frequency` does not use soma center to calculate max radius

Issue - State: closed - Opened by eleftherioszisis over 2 years ago
Labels: bug

#987 - `sholl_frequency` fails if `neurite_type` not in morphology

Issue - State: closed - Opened by eleftherioszisis over 2 years ago - 2 comments

#986 - Fix the trunk_origin_radii feature

Pull Request - State: closed - Opened by adrien-berchet over 2 years ago - 3 comments

#985 - Possibly wrong behavior of `trunk_origin_radii` feature

Issue - State: closed - Opened by eleftherioszisis over 2 years ago - 8 comments
Labels: question

#984 - Add py39 and py310 for tests

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 1 comment

#983 - Failing tests on Python 3.10

Issue - State: closed - Opened by sanjayankur31 over 2 years ago - 7 comments

#982 - Morphology level radial distance features default on using tree root as origin

Issue - State: closed - Opened by eleftherioszisis over 2 years ago - 2 comments
Labels: enhancement, version 4.0

#981 - Mixed subtree processing

Pull Request - State: closed - Opened by mgeplf over 2 years ago - 1 comment
Labels: version 4.0

#979 - Use readonly morphio Morphology

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 3 comments
Labels: version 4.0

#977 - allow for neurites to be attached to neurites

Pull Request - State: closed - Opened by arnaudon almost 3 years ago - 29 comments

#975 - Axon metrics at zero for some files

Issue - State: open - Opened by jonathanlurie almost 3 years ago - 30 comments
Labels: version 4.0

#971 - Type of Neuron.root_sections != Neuron.sections

Issue - State: closed - Opened by adrien-berchet almost 3 years ago - 15 comments
Labels: version 4.0

#969 - fix plot limits

Pull Request - State: closed - Opened by arnaudon about 3 years ago - 4 comments

Pull Request - State: closed - Opened by bbpgithubaudit over 3 years ago - 1 comment

#920 - Option to plot nrn_secid labels

Pull Request - State: closed - Opened by arnaudon over 3 years ago - 1 comment

#868 - Add option to plot NEURON section ids on neurons

Issue - State: closed - Opened by arnaudon over 3 years ago - 5 comments
Labels: enhancement

#642 - New Feature: Topological Asymmetry

Issue - State: open - Opened by chalimou about 7 years ago - 3 comments
Labels: new feature

#587 - Convex hull calculation used for density doesn't take into account the diameters

Issue - State: closed - Opened by mgeplf over 7 years ago - 6 comments

GitHub / BlueBrain/NeuroM issues and pull requests