Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / BlueBrain/NeuroM issues and pull requests

#1134 - Unable to parse this line

Issue - State: open - Opened by harshk95 14 days ago - 1 comment

#1132 - Add python3.13 & remove EOL python3.8

Pull Request - State: closed - Opened by eleftherioszisis 4 months ago - 1 comment

#1131 - Prepare for Python 3.13, fix issues with numpy>2 & matplotlib,

Pull Request - State: closed - Opened by eleftherioszisis 5 months ago - 1 comment

#1130 - test_tree3d fails with Python 3.13

Issue - State: closed - Opened by penguinpee 5 months ago - 3 comments

#1129 - Fix linting errors

Pull Request - State: closed - Opened by eleftherioszisis 9 months ago - 1 comment

#1128 - Reduce soma volume measurement test precision

Pull Request - State: closed - Opened by eleftherioszisis 9 months ago - 1 comment

#1127 - Allow axon-carrying-denrite with fork axon subtrees

Pull Request - State: closed - Opened by eleftherioszisis 9 months ago - 1 comment

#1125 - axon-carrying-dendrite where a dendrite ends on axonal fork

Issue - State: closed - Opened by eleftherioszisis 9 months ago - 2 comments

#1124 - Clean doc warnings

Pull Request - State: closed - Opened by mgeplf 9 months ago - 1 comment

#1123 - 4.0.0: cannot build documentation

Issue - State: closed - Opened by kloczek 9 months ago - 6 comments

#1122 - Fix mpl.cm.get_cmap deprecation

Pull Request - State: closed - Opened by eleftherioszisis 10 months ago - 1 comment

#1120 - Decouple Morphology constructor from io

Pull Request - State: closed - Opened by eleftherioszisis 10 months ago - 1 comment

#1119 - Some proposals

Pull Request - State: closed - Opened by adrien-berchet 10 months ago - 2 comments

#1118 - Move soma methods to functions

Pull Request - State: closed - Opened by eleftherioszisis 10 months ago - 1 comment
Labels: version 4.0

#1117 - Add __version__ attribute

Pull Request - State: closed - Opened by adrien-berchet 10 months ago - 1 comment

#1116 - Fix NeuriteType for Python 3.12.3

Pull Request - State: closed - Opened by adrien-berchet 10 months ago - 1 comment

#1115 - Add check for overlapping points in neurites

Pull Request - State: closed - Opened by adrien-berchet 10 months ago - 2 comments

#1114 - Make has_no_back_tracking() compatible with generate_annotation()

Pull Request - State: closed - Opened by adrien-berchet 10 months ago - 2 comments

#1113 - Add has_no_back_tracking function

Pull Request - State: closed - Opened by adrien-berchet 10 months ago - 2 comments

#1112 - Add back_tracking_segments() which is then called by is_back_tracking

Pull Request - State: closed - Opened by adrien-berchet 10 months ago - 2 comments

#1111 - V4

Pull Request - State: closed - Opened by mgeplf 11 months ago - 2 comments

#1110 - Unsupported section type: 0

Issue - State: open - Opened by superwhat1 11 months ago - 4 comments

#1109 - CI: Add CodeCov token

Pull Request - State: closed - Opened by adrien-berchet about 1 year ago

#1108 - Add check-packaging

Pull Request - State: closed - Opened by eleftherioszisis about 1 year ago - 1 comment

#1107 - fix location of readme, update links for badges and banner

Pull Request - State: closed - Opened by mgeplf about 1 year ago - 1 comment

#1106 - github action: fix var name for sdist upload

Pull Request - State: closed - Opened by mgeplf about 1 year ago

#1105 - fix sdist so pypi upload can happen

Pull Request - State: closed - Opened by mgeplf about 1 year ago - 1 comment

#1104 - Replace pkg_resources with importlib in docs

Pull Request - State: closed - Opened by eleftherioszisis about 1 year ago - 2 comments

#1103 - 3.2.7: use of `pkg_resources` is deprecated

Issue - State: closed - Opened by kloczek about 1 year ago - 2 comments

#1102 - Updating copyright year 2024

Pull Request - State: closed - Opened by bbpgithubaudit about 1 year ago

#1101 - do not use master for github actions

Pull Request - State: closed - Opened by mgeplf about 1 year ago - 1 comment

#1100 - update contributors to match git logs

Pull Request - State: closed - Opened by mgeplf about 1 year ago

#1099 - try updating .zenodo.json

Pull Request - State: closed - Opened by mgeplf about 1 year ago

#1098 - Add testing for python3.12

Pull Request - State: closed - Opened by eleftherioszisis about 1 year ago - 1 comment

#1097 - load_morphology(path).sections throws error

Issue - State: open - Opened by eleftherioszisis about 1 year ago - 3 comments

#1096 - Add testing of example scripts (#1041)

Pull Request - State: closed - Opened by eleftherioszisis about 1 year ago

#1095 - Fix tutorial & add tutorial testing

Pull Request - State: closed - Opened by eleftherioszisis about 1 year ago - 1 comment

#1094 - Add proper spacing in morph_stats docstring config path

Pull Request - State: closed - Opened by eleftherioszisis about 1 year ago

#1093 - Fix warnings in tests

Pull Request - State: closed - Opened by eleftherioszisis about 1 year ago - 1 comment

#1092 - Remove pyXX prefix for lint, docs, and coverage

Pull Request - State: closed - Opened by eleftherioszisis about 1 year ago - 2 comments

#1091 - fix examples after move to v3

Pull Request - State: closed - Opened by mgeplf about 1 year ago - 1 comment

#1090 - example with "soma_radii" is outdated.

Issue - State: closed - Opened by jdcourcol about 1 year ago

#1089 - update soma for new morphio 3.3.7 error

Pull Request - State: closed - Opened by mgeplf about 1 year ago - 1 comment

#1088 - modernize to pyproject.toml

Pull Request - State: closed - Opened by mgeplf about 1 year ago - 1 comment

#1087 - set readthedocs python to a version we know we have morphio wheels for

Pull Request - State: closed - Opened by mgeplf about 1 year ago

#1086 - Add Zenodo author list

Pull Request - State: closed - Opened by eleftherioszisis about 1 year ago - 1 comment

#1085 - Cannot install NeuroM on macOSX.

Issue - State: closed - Opened by marwan-abdellah over 1 year ago - 4 comments

#1084 - Replace PyPI mock test dependency with unittest.mock

Pull Request - State: closed - Opened by musicinmybrain over 1 year ago - 2 comments

#1083 - Remove a few useless shebang lines

Pull Request - State: closed - Opened by musicinmybrain over 1 year ago - 2 comments

#1082 - Remove py37, add py311, and fix Rectangle kwarg error

Pull Request - State: closed - Opened by eleftherioszisis over 1 year ago - 5 comments

#1081 - Update CHANGELOG

Pull Request - State: closed - Opened by adrien-berchet over 1 year ago - 2 comments

#1079 - Broken call to Rectangle constructor

Issue - State: closed - Opened by QuLogic over 1 year ago - 2 comments

#1078 - Local bifurcation angle computation fails when a section has only one point

Issue - State: open - Opened by ssssarah over 1 year ago - 6 comments

#1077 - update readthedocs config

Pull Request - State: closed - Opened by mgeplf over 1 year ago

#1074 - Upload releases to conda-forge?

Issue - State: open - Opened by adrien-berchet over 1 year ago - 4 comments

#1073 - Check that soma is not empty when features need it

Pull Request - State: closed - Opened by adrien-berchet almost 2 years ago - 1 comment

#1072 - Raise more informative error when a morph has no soma

Issue - State: closed - Opened by adrien-berchet almost 2 years ago

#1071 - Proposal for v4 composite types

Pull Request - State: closed - Opened by adrien-berchet almost 2 years ago - 1 comment
Labels: version 4.0

#1070 - Load mixed expected results from json

Pull Request - State: closed - Opened by eleftherioszisis almost 2 years ago

#1069 - Fix

Pull Request - State: closed - Opened by mgeplf almost 2 years ago - 1 comment

#1068 - How can I get all the features results in the simple way?

Issue - State: open - Opened by melancholy12 almost 2 years ago - 1 comment

#1067 - Proposal

Pull Request - State: closed - Opened by adrien-berchet about 2 years ago - 5 comments

#1065 - Cannot .get Features from any .swc reconstruction done with neuTube

Issue - State: closed - Opened by IzabelaJC over 2 years ago - 6 comments

#1064 - Feat: Ensure all features return built-in types

Pull Request - State: closed - Opened by adrien-berchet over 2 years ago - 1 comment

#1063 - Fix QhullError warning

Pull Request - State: closed - Opened by GianlucaFicarelli over 2 years ago - 1 comment

#1062 - Features should return consistent types

Issue - State: closed - Opened by adrien-berchet over 2 years ago - 2 comments

#1061 - Release 3.2.1

Pull Request - State: closed - Opened by adrien-berchet over 2 years ago

#1060 - Fix: extract_stats could not work on single neurite

Pull Request - State: closed - Opened by adrien-berchet over 2 years ago - 2 comments

#1059 - Draft of composite type

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago
Labels: version 4.0

#1058 - Fix language detection

Pull Request - State: closed - Opened by adrien-berchet over 2 years ago - 1 comment

#1057 - Format long lists in tests

Pull Request - State: closed - Opened by adrien-berchet over 2 years ago - 2 comments
Labels: version 4.0

#1056 - Fix coverage

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 2 comments

#1055 - Sync with master

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 1 comment

#1054 - Replace iter_* methods by properties in core objects and improve iter_segments

Pull Request - State: closed - Opened by adrien-berchet over 2 years ago - 4 comments
Labels: version 4.0

#1053 - Add path length option to sholl analysis

Pull Request - State: closed - Opened by arnaudon over 2 years ago - 8 comments

#1052 - Add from_origin to trunk_vectors and related features

Pull Request - State: closed - Opened by arnaudon over 2 years ago - 8 comments

#1051 - Fix view cli

Pull Request - State: closed - Opened by arnaudon over 2 years ago

#1050 - Feature cache

Pull Request - State: closed - Opened by adrien-berchet over 2 years ago - 10 comments

#1049 - allow Morphology objects to be either mut or immut

Pull Request - State: closed - Opened by mgeplf over 2 years ago - 1 comment

#1048 - Fix QhullError warning

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 1 comment

#1047 - Fix load_morpholgies to always resolve paths

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 11 comments

#1046 - `neurom.load_morphologies` does not resolve paths

Issue - State: closed - Opened by eleftherioszisis over 2 years ago

#1045 - remove single point contour somas in h5 and asc tests

Pull Request - State: closed - Opened by mgeplf over 2 years ago

#1044 - Update v4 with latest master

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago

#1043 - Remove duplicated deps jinja, sphinx

Pull Request - State: closed - Opened by stefanoantonel over 2 years ago - 1 comment

#1042 - Add black to neurom, format everything, and add to lint

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 3 comments

#1041 - Add testing of example scripts

Pull Request - State: closed - Opened by eleftherioszisis over 2 years ago - 1 comment

#1040 - Add isort for formatting/linting

Pull Request - State: closed - Opened by eleftherioszisis almost 3 years ago

#1039 - Fix tutorials and add tutorial testenv

Pull Request - State: closed - Opened by eleftherioszisis almost 3 years ago - 3 comments

#1038 - Remove pyXX prefix for lint, docs, and coverage

Pull Request - State: closed - Opened by eleftherioszisis almost 3 years ago - 1 comment

#1037 - Add build test for mybinder

Pull Request - State: closed - Opened by eleftherioszisis almost 3 years ago - 3 comments

#1036 - Add build test for mybinder

Pull Request - State: closed - Opened by eleftherioszisis almost 3 years ago - 1 comment

#1035 - Make documentation/docstrings testable

Pull Request - State: closed - Opened by eleftherioszisis almost 3 years ago - 3 comments
Labels: version 4.0