Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / BlueBrain/BluePyEModel issues and pull requests

#178 - Fix setting mismatch when doing absolute amplitude extraction

Pull Request - State: closed - Opened by AurelienJaquier 6 days ago - 1 comment

#177 - Add simulated values to IV and FI plots for comparison with experimental data

Pull Request - State: open - Opened by ilkilic 11 days ago - 1 comment

#176 - add settings for customisable plots

Pull Request - State: closed - Opened by AurelienJaquier 18 days ago - 1 comment

#175 - Refactor pipeline plot

Pull Request - State: closed - Opened by AurelienJaquier 21 days ago - 1 comment

#174 - fix thumbanil for absolute amplitude protocols

Pull Request - State: closed - Opened by AurelienJaquier about 2 months ago - 1 comment

#173 - fix wheels creation

Pull Request - State: closed - Opened by AurelienJaquier about 2 months ago - 1 comment

#172 - Fix plotting

Pull Request - State: closed - Opened by AurelienJaquier about 2 months ago - 1 comment

#171 - also use schema in memodel example

Pull Request - State: closed - Opened by AurelienJaquier 2 months ago - 1 comment

#170 - Fix frequency in FI curve and add global parameters

Pull Request - State: closed - Opened by AurelienJaquier 2 months ago - 1 comment

#169 - passing cross_bucket in fetch_legacy_compatible

Pull Request - State: closed - Opened by AurelienJaquier 3 months ago - 1 comment

#168 - Add schemas when registering / updating nexus resources

Pull Request - State: closed - Opened by AurelienJaquier 3 months ago - 1 comment

#167 - Adjust token refresh offset to prevent immediate renewal

Pull Request - State: closed - Opened by ilkilic 3 months ago - 2 comments

#166 - Fix compute_scores to handle protocol names with '.'

Pull Request - State: closed - Opened by ilkilic 3 months ago - 1 comment

#165 - Add simplecell example

Pull Request - State: closed - Opened by ilkilic 3 months ago - 1 comment

#164 - Add Nexus example

Pull Request - State: closed - Opened by ilkilic 4 months ago - 2 comments

#163 - New plotting functions

Pull Request - State: closed - Opened by AurelienJaquier 4 months ago - 1 comment

#162 - Add CITATION.cff

Pull Request - State: closed - Opened by ilkilic 4 months ago - 1 comment

#161 - A better ValueError message for inccorect location

Pull Request - State: closed - Opened by darshanmandge 4 months ago - 2 comments

#160 - handling mismatch in bAP plot

Pull Request - State: closed - Opened by AurelienJaquier 4 months ago - 1 comment

#159 - Add nexus_images parameter to EModel class for legacy support

Pull Request - State: closed - Opened by ilkilic 5 months ago - 1 comment

#158 - also read weights from legacy FCC

Pull Request - State: closed - Opened by AurelienJaquier 5 months ago - 1 comment

#157 - fix morph_modifiers check

Pull Request - State: closed - Opened by ilkilic 5 months ago - 1 comment

#156 - update distribution paths

Pull Request - State: closed - Opened by ilkilic 5 months ago - 2 comments

#155 - Update run-emodel example

Pull Request - State: closed - Opened by ilkilic 5 months ago - 2 comments

#154 - compute threshold in memodel example if not threshold-based protocols

Pull Request - State: closed - Opened by AurelienJaquier 5 months ago - 3 comments

#153 - make memodel example add holding and threshold currents to resource

Pull Request - State: closed - Opened by AurelienJaquier 5 months ago - 1 comment

#152 - do not have endpoint hard-coded for ontology stuff

Pull Request - State: closed - Opened by AurelienJaquier 5 months ago - 1 comment

#151 - use parser in memodel example

Pull Request - State: closed - Opened by AurelienJaquier 5 months ago - 1 comment

#150 - add license header

Pull Request - State: closed - Opened by ilkilic 5 months ago - 1 comment

#149 - adding IcSelector to the docs

Pull Request - State: closed - Opened by AurelienJaquier 5 months ago - 1 comment

#147 - Revert "update gene selection to include me-type (#146)"

Pull Request - State: closed - Opened by ilkilic 5 months ago

#146 - update gene selection to include me-type

Pull Request - State: closed - Opened by ilkilic 5 months ago - 1 comment

#145 - allow non-specific currents not starting with 'i'

Pull Request - State: closed - Opened by AurelienJaquier 5 months ago - 3 comments

#144 - add icselector to bluepyemodel

Pull Request - State: closed - Opened by vandorp 6 months ago - 9 comments

#143 - do not take into account allen_notation when filtering the emodels

Pull Request - State: closed - Opened by AurelienJaquier 6 months ago - 1 comment

#142 - add workflow_id as arguments of FCC and EM

Pull Request - State: closed - Opened by AurelienJaquier 6 months ago - 1 comment

#141 - Add morphology-utils tests

Pull Request - State: closed - Opened by AurelienJaquier 6 months ago - 1 comment

#140 - make preselect for validation False by default

Pull Request - State: closed - Opened by AurelienJaquier 6 months ago - 1 comment

#139 - Migrate pkg_resources to importlib_resources

Pull Request - State: closed - Opened by ilkilic 7 months ago - 1 comment

#138 - Drop python 3.8 support

Pull Request - State: closed - Opened by ilkilic 7 months ago - 1 comment

#137 - Add Nexus integration #major

Pull Request - State: closed - Opened by ilkilic 7 months ago - 8 comments

#136 - add MEModel

Pull Request - State: closed - Opened by AurelienJaquier 7 months ago - 1 comment

#135 - Improve morph modifiers

Pull Request - State: closed - Opened by AurelienJaquier 7 months ago - 1 comment

#134 - fix NegCheops total duration default value

Pull Request - State: closed - Opened by AurelienJaquier 7 months ago - 1 comment

#133 - Small difference in the total duration of NegCheops

Issue - State: closed - Opened by anilbey 7 months ago - 1 comment

#132 - Adding tests for data/utils.py

Pull Request - State: closed - Opened by AurelienJaquier 7 months ago - 1 comment

#130 - Small fix in replace_axon_legacy

Pull Request - State: closed - Opened by ilkilic 7 months ago - 1 comment

#129 - fix handling of custom morph_modifiers hoc_string

Pull Request - State: closed - Opened by ilkilic 7 months ago - 1 comment

#128 - Square ecode

Pull Request - State: closed - Opened by AurelienJaquier 8 months ago - 2 comments

#127 - upper case ASC, SWC compatible hoc template

Pull Request - State: closed - Opened by AurelienJaquier 8 months ago - 1 comment

#126 - Fix Neuron syntax error in replace_axon_legacy_hoc

Pull Request - State: closed - Opened by ilkilic 8 months ago - 2 comments

#125 - have use_params_for_seed as a setting

Pull Request - State: closed - Opened by AurelienJaquier 8 months ago - 1 comment

#124 - replace deprecated efel usages

Pull Request - State: closed - Opened by anilbey 8 months ago - 1 comment

#123 - small fix

Pull Request - State: closed - Opened by AurelienJaquier 8 months ago - 1 comment

#122 - use camel case for nexus metadata

Pull Request - State: closed - Opened by AurelienJaquier 8 months ago - 5 comments

#121 - add morph_modifiers to the __str__ of EModelConfiguration

Pull Request - State: closed - Opened by AurelienJaquier 8 months ago

#120 - Refactor morph_modifier

Pull Request - State: closed - Opened by ilkilic 8 months ago - 1 comment

#119 - add docstring to TraceFile.__init__

Pull Request - State: closed - Opened by AurelienJaquier 8 months ago - 1 comment

#118 - refactor protocol configuration

Pull Request - State: closed - Opened by AurelienJaquier 9 months ago

#117 - new argument for get_available_morphologies: skip_get_available_morph

Pull Request - State: closed - Opened by AurelienJaquier 9 months ago - 1 comment

#116 - allow to use do_replace_axon in NrnFileMorphology

Pull Request - State: closed - Opened by AurelienJaquier 9 months ago - 1 comment

#115 - Add case-insensitive morphology file search

Pull Request - State: closed - Opened by ilkilic 9 months ago - 1 comment

#114 - Fixthumbnail

Pull Request - State: closed - Opened by AurelienJaquier 9 months ago

#113 - can init mech with nexus id

Pull Request - State: closed - Opened by AurelienJaquier 9 months ago - 4 comments

#112 - Cleanup tests

Pull Request - State: closed - Opened by GianlucaFicarelli 9 months ago - 1 comment

#111 - Allow LocalAccessPoint to load EModels from Nexus staged data

Pull Request - State: closed - Opened by GianlucaFicarelli 9 months ago - 2 comments

#110 - new plotting function for thumbnail figure

Pull Request - State: closed - Opened by AurelienJaquier 9 months ago - 1 comment

#109 - Adjust stopping_params to accurately check max gen in IBEA case

Pull Request - State: closed - Opened by ilkilic 9 months ago - 1 comment

#108 - do not use allen_notation in nexus registration/search

Pull Request - State: closed - Opened by AurelienJaquier 9 months ago

#107 - new morph modifiers for olfactory bulb

Pull Request - State: closed - Opened by AurelienJaquier 9 months ago - 1 comment

#106 - add use_ProbAMPANMDA_EMS setting

Pull Request - State: closed - Opened by AurelienJaquier 10 months ago - 1 comment

#105 - set interpolate_RMP_extraction to False by default

Pull Request - State: closed - Opened by AurelienJaquier 10 months ago - 2 comments

#104 - make protocols_mapping optional

Pull Request - State: closed - Opened by darshanmandge 10 months ago - 1 comment

#103 - new feature in export_emodel

Pull Request - State: closed - Opened by AurelienJaquier 10 months ago

#102 - Fix argument passing bug in TargetsConfiguration

Pull Request - State: closed - Opened by ilkilic 10 months ago - 2 comments

#101 - Enable weighted optimisation

Pull Request - State: closed - Opened by AurelienJaquier 10 months ago - 1 comment

#100 - Update default BluePyOpt version

Pull Request - State: closed - Opened by darshanmandge 10 months ago - 1 comment

#99 - update jinja templates

Pull Request - State: closed - Opened by AurelienJaquier 10 months ago

#98 - rename interpolate_RMP settings

Pull Request - State: closed - Opened by AurelienJaquier 10 months ago - 1 comment

#97 - dendritic validation

Pull Request - State: closed - Opened by AurelienJaquier 10 months ago - 1 comment

#96 - Implement protocol renaming feature post-extraction

Pull Request - State: closed - Opened by ilkilic 10 months ago

#95 - allow latest jinja2 in dependencies

Pull Request - State: closed - Opened by AurelienJaquier 10 months ago - 1 comment

#94 - remove tests module from distribution

Pull Request - State: closed - Opened by AurelienJaquier 10 months ago

#93 - remove tests from modules found by setuptools

Pull Request - State: closed - Opened by AurelienJaquier 11 months ago

#92 - add idthresh ecode

Pull Request - State: closed - Opened by darshanmandge 11 months ago - 1 comment

#91 - update funding acknowledgements

Pull Request - State: closed - Opened by ilkilic 12 months ago - 1 comment

#90 - add check for emodel name compliance with NEURON requirements

Pull Request - State: closed - Opened by ilkilic 12 months ago - 1 comment

#89 - update metadata key names in mechanism

Pull Request - State: closed - Opened by ilkilic 12 months ago - 1 comment

#88 - BluePyEfe compatibility

Pull Request - State: closed - Opened by AurelienJaquier 12 months ago - 1 comment

#87 - Validation: Fix validation protocol name check

Pull Request - State: closed - Opened by ilkilic 12 months ago - 1 comment

#86 - Disable CVODE if neuron_dt is None

Pull Request - State: closed - Opened by darshanmandge 12 months ago - 1 comment

#85 - Take default cvode from pipeline_settings

Issue - State: closed - Opened by AurelienJaquier 12 months ago
Labels: good first issue

#84 - Fix: FCC Ignoring 'default_std_value' parameter issue

Pull Request - State: closed - Opened by ilkilic almost 1 year ago

#83 - allow stimuli to be non-threshold based

Pull Request - State: closed - Opened by AurelienJaquier about 1 year ago - 1 comment

#82 - Brain region: Switch to Allen notation for checkpoint path if no legacy detected

Pull Request - State: closed - Opened by ilkilic about 1 year ago - 1 comment

#81 - Use MorphIO to create placeholder morphology

Pull Request - State: closed - Opened by arnaudon about 1 year ago - 4 comments

#80 - Fix mechanisms directory check in Luigi Task

Pull Request - State: closed - Opened by ilkilic about 1 year ago - 1 comment

#79 - Architecture detection for mechanisms and switch to .o file checking

Pull Request - State: closed - Opened by ilkilic about 1 year ago - 1 comment