Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / BlueBrain/Atlas-Download-Tools issues and pull requests
#111 - Test
Pull Request -
State: closed - Opened by EmilieDel over 1 year ago
- 1 comment
#110 - Don't require opencv-python if opencv is already installed
Pull Request -
State: closed - Opened by heerener over 1 year ago
#109 - Fix CI (Remove 3.6 python, fix numpy ValueError, change syntax for tox>4)
Pull Request -
State: closed - Opened by EmilieDel over 1 year ago
#108 - Handle `PIL.UnidentifiedImageError`
Pull Request -
State: closed - Opened by EmilieDel over 1 year ago
#107 - Handle `PIL.UnidentifiedImageError`
Issue -
State: closed - Opened by EmilieDel over 1 year ago
#106 - Make `get_experiment_list_from_gene` case insensitive
Issue -
State: open - Opened by jankrepl over 2 years ago
#105 - Add `download` scripts
Pull Request -
State: closed - Opened by EmilieDel over 2 years ago
#104 - Manually updating copyright year
Pull Request -
State: closed - Opened by alex4200 over 2 years ago
#103 - Fix linting
Pull Request -
State: closed - Opened by EmilieDel over 2 years ago
#102 - Fix CI
Pull Request -
State: closed - Opened by EmilieDel over 2 years ago
#101 - Updating copyright year 2022
Pull Request -
State: closed - Opened by bbpgithubaudit over 2 years ago
- 3 comments
#100 - Change banner to add source (Allen Institute)
Pull Request -
State: closed - Opened by FrancescoCasalegno over 2 years ago
- 1 comment
#99 - Don't error out in rma_all for incomplete response
Pull Request -
State: open - Opened by Stannislav almost 3 years ago
#98 - Some RMA queries never return all results
Issue -
State: open - Opened by Stannislav almost 3 years ago
#97 - Add the "download image" command
Pull Request -
State: closed - Opened by Stannislav almost 3 years ago
#96 - Restructure the CLI
Pull Request -
State: closed - Opened by Stannislav almost 3 years ago
#95 - Add the "downloads faithful dataset" CLI command
Issue -
State: open - Opened by Stannislav almost 3 years ago
#94 - Uncaught network problem exceptions in CLI dataset download
Issue -
State: open - Opened by Stannislav almost 3 years ago
#93 - atldld dataset download show numeric plane of section instead of text
Issue -
State: open - Opened by Stannislav almost 3 years ago
#92 - Restrict to click>=8
Pull Request -
State: closed - Opened by Stannislav almost 3 years ago
#91 - CLI crashes for `click<8`
Issue -
State: closed - Opened by Stannislav almost 3 years ago
- 2 comments
Labels: bug
#90 - Remove pandas and responses from requirements
Pull Request -
State: closed - Opened by Stannislav almost 3 years ago
#89 - Remove unnecessary requirements
Issue -
State: closed - Opened by Stannislav almost 3 years ago
#88 - Dedicated `CLI` section in the docs
Issue -
State: open - Opened by jankrepl almost 3 years ago
Labels: documentation
#87 - Download of annotated atlases (part of the Allen API)
Issue -
State: open - Opened by jankrepl almost 3 years ago
#86 - Investigate 3D expression grid (part of the Allen API)
Issue -
State: open - Opened by jankrepl almost 3 years ago
#85 - Implement `atldld search img` command
Pull Request -
State: closed - Opened by EmilieDel almost 3 years ago
#84 - Add the `atldld search` command
Pull Request -
State: closed - Opened by Stannislav almost 3 years ago
#83 - Refactor the cli module
Pull Request -
State: closed - Opened by Stannislav almost 3 years ago
#82 - Mark test using the internet
Issue -
State: closed - Opened by jankrepl almost 3 years ago
#81 - Update `docs` with new API
Issue -
State: open - Opened by jankrepl almost 3 years ago
- 1 comment
Labels: documentation
#80 - Add more example of CLI command in README
Pull Request -
State: closed - Opened by EmilieDel about 3 years ago
#79 - Dataset download entrypoint
Pull Request -
State: closed - Opened by jankrepl about 3 years ago
- 3 comments
#78 - Fix generator docstring
Issue -
State: closed - Opened by jankrepl about 3 years ago
#77 - Fix Description
Pull Request -
State: closed - Opened by EmilieDel about 3 years ago
#76 - Add description in setup.py
Pull Request -
State: closed - Opened by EmilieDel about 3 years ago
#75 - Cache responses of xy_to_pir_API_single
Pull Request -
State: closed - Opened by Stannislav about 3 years ago
- 3 comments
#74 - Implement `xy_to_pir` locally
Issue -
State: closed - Opened by jankrepl about 3 years ago
#73 - Customizable cache folder
Pull Request -
State: closed - Opened by Stannislav about 3 years ago
#72 - Cleanup README header
Pull Request -
State: closed - Opened by Stannislav about 3 years ago
#71 - `xy_to_pir` computed locally
Pull Request -
State: closed - Opened by jankrepl about 3 years ago
#70 - Download faithful dataset
Pull Request -
State: open - Opened by Stannislav about 3 years ago
#69 - get_corners_in_ref_space: use affine transformations instead of queries
Issue -
State: open - Opened by Stannislav about 3 years ago
- 2 comments
#68 - Control the logging level in the CLI
Issue -
State: open - Opened by Stannislav about 3 years ago
#67 - Move the CLI subcommands to submodules
Issue -
State: closed - Opened by Stannislav about 3 years ago
#66 - Add the "atldld dataset preview" command
Pull Request -
State: closed - Opened by Stannislav about 3 years ago
- 2 comments
#65 - Clean up pytest markers
Issue -
State: open - Opened by jankrepl about 3 years ago
- 7 comments
#64 - Avoid recomputatation of `transformation` inside of `DisplacementField.warp`
Issue -
State: open - Opened by jankrepl about 3 years ago
#63 - Ignore build artifacts
Pull Request -
State: closed - Opened by Stannislav about 3 years ago
#62 - Change order of matrix multiplications + other optimizations (`get_parallel_transform`)
Pull Request -
State: closed - Opened by jankrepl about 3 years ago
#61 - Decide for monospaced text syntax in RST files
Issue -
State: open - Opened by Stannislav about 3 years ago
#60 - Use associativity of matrix multiplication
Issue -
State: closed - Opened by jankrepl about 3 years ago
#59 - Improve `get_image`
Pull Request -
State: closed - Opened by Stannislav about 3 years ago
#58 - Better handling of the cache folder
Issue -
State: closed - Opened by Stannislav about 3 years ago
- 4 comments
#57 - Move GLOBAL_CACHE_FOLDER from atldld.base to atldld.constants
Pull Request -
State: closed - Opened by Stannislav about 3 years ago
- 3 comments
#56 - Refactor `sync.py` module
Pull Request -
State: closed - Opened by jankrepl about 3 years ago
- 1 comment
#55 - Add a `constants` module
Issue -
State: closed - Opened by Stannislav about 3 years ago
- 1 comment
#54 - Create an entrypoint for `download_parallel_dataset`
Issue -
State: closed - Opened by jankrepl about 3 years ago
#53 - Multiprocessing for dataset download
Issue -
State: open - Opened by jankrepl about 3 years ago
#52 - Refactor `sync.py` module
Issue -
State: closed - Opened by jankrepl about 3 years ago
- 1 comment
#51 - Determine `donwsample_img` automatically
Issue -
State: open - Opened by jankrepl about 3 years ago
#50 - What is the section number provided by Allen? Can we use it?
Issue -
State: closed - Opened by jankrepl about 3 years ago
- 1 comment
#49 - Custom strategy to determine the slice coordinate in the reference space
Issue -
State: open - Opened by jankrepl about 3 years ago
#48 - Decide which parts of the RMA spec to implement.
Issue -
State: open - Opened by Stannislav about 3 years ago
#47 - Custom refspace dimensions
Issue -
State: open - Opened by jankrepl about 3 years ago
- 2 comments
#46 - Support downsampling in `get_image`
Issue -
State: closed - Opened by jankrepl about 3 years ago
#45 - Implement norm with `np.hypot`
Issue -
State: open - Opened by jankrepl about 3 years ago
- 2 comments
#44 - Create a visualization module
Issue -
State: closed - Opened by jankrepl about 3 years ago
- 1 comment
#43 - Add the atldld.__main__ module
Pull Request -
State: closed - Opened by Stannislav about 3 years ago
Labels: enhancement
#42 - Add RMA requests module
Pull Request -
State: closed - Opened by Stannislav about 3 years ago
- 3 comments
Labels: enhancement
#41 - Problems with `get_image`
Issue -
State: closed - Opened by jankrepl about 3 years ago
- 3 comments
#40 - Minimal implementation of `download_dataset_parallel`
Pull Request -
State: closed - Opened by jankrepl about 3 years ago
- 2 comments
#39 - Remove warp_rs9
Pull Request -
State: closed - Opened by jankrepl about 3 years ago
- 2 comments
#38 - Add description of the repository in setup.py
Issue -
State: closed - Opened by EmilieDel about 3 years ago
#37 - `pir_to_xy_local_with_axis` too general + inconsistent?
Issue -
State: closed - Opened by jankrepl about 3 years ago
- 1 comment
#36 - Remove `warp_rs9`?
Issue -
State: closed - Opened by jankrepl about 3 years ago
#35 - `pir_to_xy_local` too general?
Issue -
State: closed - Opened by jankrepl about 3 years ago
- 1 comment
#34 - Reference spaces (sharing knowledge)
Issue -
State: closed - Opened by jankrepl about 3 years ago
- 11 comments
#33 - Comprehensive explanation of `download_dataset`
Issue -
State: open - Opened by jankrepl about 3 years ago
#32 - Add badges and instruction for installation with PyPI
Pull Request -
State: closed - Opened by EmilieDel about 3 years ago
#31 - Cleanup DisplacementField
Pull Request -
State: closed - Opened by jankrepl about 3 years ago
- 5 comments
#30 - Add Atlas Download Tools Banner
Pull Request -
State: closed - Opened by EmilieDel about 3 years ago
#29 - Integrate documentation to RTD
Pull Request -
State: closed - Opened by EmilieDel about 3 years ago
#28 - Add summary paragraph in README.md
Pull Request -
State: closed - Opened by EmilieDel about 3 years ago
#27 - Remove 4 corners logic
Issue -
State: closed - Opened by EmilieDel about 3 years ago
- 1 comment
#26 - Compute DFs once for the entire dataset
Issue -
State: closed - Opened by EmilieDel about 3 years ago
- 1 comment
#25 - Allow for higher dimensions of the reference space
Issue -
State: closed - Opened by EmilieDel about 3 years ago
#24 - Add functionalities for spinal-cord dataset
Issue -
State: open - Opened by EmilieDel about 3 years ago
#23 - Slice Nissl with same angle as raw coronal/sagittal slices
Issue -
State: open - Opened by EmilieDel about 3 years ago
#22 - Move dev code for AIBS true mapping to repo
Issue -
State: open - Opened by EmilieDel about 3 years ago
- 1 comment
#21 - Put the package on PyPi and add banners in the README.
Issue -
State: closed - Opened by EmilieDel about 3 years ago
- 1 comment
#20 - Create DOI and add a banner in the README.
Issue -
State: closed - Opened by EmilieDel about 3 years ago
- 1 comment
#19 - Create documentation
Pull Request -
State: closed - Opened by EmilieDel about 3 years ago
- 1 comment
#18 - Create Documentation
Issue -
State: closed - Opened by EmilieDel about 3 years ago
#17 - Fix license badge link URL
Pull Request -
State: closed - Opened by Stannislav about 3 years ago
#16 - Add a CLI
Pull Request -
State: closed - Opened by Stannislav about 3 years ago
#11 - Create method warping the images
Issue -
State: closed - Opened by EmilieDel about 3 years ago
- 1 comment
#9 - Clean DisplacementField class
Issue -
State: closed - Opened by EmilieDel about 3 years ago
- 1 comment
#7 - Use appdir to get the cache folder
Issue -
State: closed - Opened by EmilieDel about 3 years ago
#5 - Remove duplicate cache folder variable
Issue -
State: closed - Opened by Stannislav about 3 years ago