Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / BlueBrain/Atlas-Download-Tools issues and pull requests

#111 - Test

Pull Request - State: closed - Opened by EmilieDel over 1 year ago - 1 comment

#110 - Don't require opencv-python if opencv is already installed

Pull Request - State: closed - Opened by heerener over 1 year ago

#108 - Handle `PIL.UnidentifiedImageError`

Pull Request - State: closed - Opened by EmilieDel over 1 year ago

#107 - Handle `PIL.UnidentifiedImageError`

Issue - State: closed - Opened by EmilieDel over 1 year ago

#106 - Make `get_experiment_list_from_gene` case insensitive

Issue - State: open - Opened by jankrepl over 2 years ago

#105 - Add `download` scripts

Pull Request - State: closed - Opened by EmilieDel over 2 years ago

#104 - Manually updating copyright year

Pull Request - State: closed - Opened by alex4200 over 2 years ago

#103 - Fix linting

Pull Request - State: closed - Opened by EmilieDel over 2 years ago

#102 - Fix CI

Pull Request - State: closed - Opened by EmilieDel over 2 years ago

#101 - Updating copyright year 2022

Pull Request - State: closed - Opened by bbpgithubaudit over 2 years ago - 3 comments

#100 - Change banner to add source (Allen Institute)

Pull Request - State: closed - Opened by FrancescoCasalegno over 2 years ago - 1 comment

#99 - Don't error out in rma_all for incomplete response

Pull Request - State: open - Opened by Stannislav almost 3 years ago

#98 - Some RMA queries never return all results

Issue - State: open - Opened by Stannislav almost 3 years ago

#97 - Add the "download image" command

Pull Request - State: closed - Opened by Stannislav almost 3 years ago

#96 - Restructure the CLI

Pull Request - State: closed - Opened by Stannislav almost 3 years ago

#95 - Add the "downloads faithful dataset" CLI command

Issue - State: open - Opened by Stannislav almost 3 years ago

#94 - Uncaught network problem exceptions in CLI dataset download

Issue - State: open - Opened by Stannislav almost 3 years ago

#92 - Restrict to click>=8

Pull Request - State: closed - Opened by Stannislav almost 3 years ago

#91 - CLI crashes for `click<8`

Issue - State: closed - Opened by Stannislav almost 3 years ago - 2 comments
Labels: bug

#90 - Remove pandas and responses from requirements

Pull Request - State: closed - Opened by Stannislav almost 3 years ago

#89 - Remove unnecessary requirements

Issue - State: closed - Opened by Stannislav almost 3 years ago

#88 - Dedicated `CLI` section in the docs

Issue - State: open - Opened by jankrepl almost 3 years ago
Labels: documentation

#87 - Download of annotated atlases (part of the Allen API)

Issue - State: open - Opened by jankrepl almost 3 years ago

#86 - Investigate 3D expression grid (part of the Allen API)

Issue - State: open - Opened by jankrepl almost 3 years ago

#85 - Implement `atldld search img` command

Pull Request - State: closed - Opened by EmilieDel almost 3 years ago

#84 - Add the `atldld search` command

Pull Request - State: closed - Opened by Stannislav almost 3 years ago

#83 - Refactor the cli module

Pull Request - State: closed - Opened by Stannislav almost 3 years ago

#82 - Mark test using the internet

Issue - State: closed - Opened by jankrepl almost 3 years ago

#81 - Update `docs` with new API

Issue - State: open - Opened by jankrepl almost 3 years ago - 1 comment
Labels: documentation

#80 - Add more example of CLI command in README

Pull Request - State: closed - Opened by EmilieDel about 3 years ago

#79 - Dataset download entrypoint

Pull Request - State: closed - Opened by jankrepl about 3 years ago - 3 comments

#78 - Fix generator docstring

Issue - State: closed - Opened by jankrepl about 3 years ago

#77 - Fix Description

Pull Request - State: closed - Opened by EmilieDel about 3 years ago

#76 - Add description in setup.py

Pull Request - State: closed - Opened by EmilieDel about 3 years ago

#75 - Cache responses of xy_to_pir_API_single

Pull Request - State: closed - Opened by Stannislav about 3 years ago - 3 comments

#74 - Implement `xy_to_pir` locally

Issue - State: closed - Opened by jankrepl about 3 years ago

#73 - Customizable cache folder

Pull Request - State: closed - Opened by Stannislav about 3 years ago

#72 - Cleanup README header

Pull Request - State: closed - Opened by Stannislav about 3 years ago

#71 - `xy_to_pir` computed locally

Pull Request - State: closed - Opened by jankrepl about 3 years ago

#70 - Download faithful dataset

Pull Request - State: open - Opened by Stannislav about 3 years ago

#69 - get_corners_in_ref_space: use affine transformations instead of queries

Issue - State: open - Opened by Stannislav about 3 years ago - 2 comments

#68 - Control the logging level in the CLI

Issue - State: open - Opened by Stannislav about 3 years ago

#67 - Move the CLI subcommands to submodules

Issue - State: closed - Opened by Stannislav about 3 years ago

#66 - Add the "atldld dataset preview" command

Pull Request - State: closed - Opened by Stannislav about 3 years ago - 2 comments

#65 - Clean up pytest markers

Issue - State: open - Opened by jankrepl about 3 years ago - 7 comments

#63 - Ignore build artifacts

Pull Request - State: closed - Opened by Stannislav about 3 years ago

#61 - Decide for monospaced text syntax in RST files

Issue - State: open - Opened by Stannislav about 3 years ago

#60 - Use associativity of matrix multiplication

Issue - State: closed - Opened by jankrepl about 3 years ago

#59 - Improve `get_image`

Pull Request - State: closed - Opened by Stannislav about 3 years ago

#58 - Better handling of the cache folder

Issue - State: closed - Opened by Stannislav about 3 years ago - 4 comments

#57 - Move GLOBAL_CACHE_FOLDER from atldld.base to atldld.constants

Pull Request - State: closed - Opened by Stannislav about 3 years ago - 3 comments

#56 - Refactor `sync.py` module

Pull Request - State: closed - Opened by jankrepl about 3 years ago - 1 comment

#55 - Add a `constants` module

Issue - State: closed - Opened by Stannislav about 3 years ago - 1 comment

#54 - Create an entrypoint for `download_parallel_dataset`

Issue - State: closed - Opened by jankrepl about 3 years ago

#53 - Multiprocessing for dataset download

Issue - State: open - Opened by jankrepl about 3 years ago

#52 - Refactor `sync.py` module

Issue - State: closed - Opened by jankrepl about 3 years ago - 1 comment

#51 - Determine `donwsample_img` automatically

Issue - State: open - Opened by jankrepl about 3 years ago

#50 - What is the section number provided by Allen? Can we use it?

Issue - State: closed - Opened by jankrepl about 3 years ago - 1 comment

#48 - Decide which parts of the RMA spec to implement.

Issue - State: open - Opened by Stannislav about 3 years ago

#47 - Custom refspace dimensions

Issue - State: open - Opened by jankrepl about 3 years ago - 2 comments

#46 - Support downsampling in `get_image`

Issue - State: closed - Opened by jankrepl about 3 years ago

#45 - Implement norm with `np.hypot`

Issue - State: open - Opened by jankrepl about 3 years ago - 2 comments

#44 - Create a visualization module

Issue - State: closed - Opened by jankrepl about 3 years ago - 1 comment

#43 - Add the atldld.__main__ module

Pull Request - State: closed - Opened by Stannislav about 3 years ago
Labels: enhancement

#42 - Add RMA requests module

Pull Request - State: closed - Opened by Stannislav about 3 years ago - 3 comments
Labels: enhancement

#41 - Problems with `get_image`

Issue - State: closed - Opened by jankrepl about 3 years ago - 3 comments

#40 - Minimal implementation of `download_dataset_parallel`

Pull Request - State: closed - Opened by jankrepl about 3 years ago - 2 comments

#39 - Remove warp_rs9

Pull Request - State: closed - Opened by jankrepl about 3 years ago - 2 comments

#38 - Add description of the repository in setup.py

Issue - State: closed - Opened by EmilieDel about 3 years ago

#37 - `pir_to_xy_local_with_axis` too general + inconsistent?

Issue - State: closed - Opened by jankrepl about 3 years ago - 1 comment

#36 - Remove `warp_rs9`?

Issue - State: closed - Opened by jankrepl about 3 years ago

#35 - `pir_to_xy_local` too general?

Issue - State: closed - Opened by jankrepl about 3 years ago - 1 comment

#34 - Reference spaces (sharing knowledge)

Issue - State: closed - Opened by jankrepl about 3 years ago - 11 comments

#33 - Comprehensive explanation of `download_dataset`

Issue - State: open - Opened by jankrepl about 3 years ago

#32 - Add badges and instruction for installation with PyPI

Pull Request - State: closed - Opened by EmilieDel about 3 years ago

#31 - Cleanup DisplacementField

Pull Request - State: closed - Opened by jankrepl about 3 years ago - 5 comments

#30 - Add Atlas Download Tools Banner

Pull Request - State: closed - Opened by EmilieDel about 3 years ago

#29 - Integrate documentation to RTD

Pull Request - State: closed - Opened by EmilieDel about 3 years ago

#28 - Add summary paragraph in README.md

Pull Request - State: closed - Opened by EmilieDel about 3 years ago

#27 - Remove 4 corners logic

Issue - State: closed - Opened by EmilieDel about 3 years ago - 1 comment

#26 - Compute DFs once for the entire dataset

Issue - State: closed - Opened by EmilieDel about 3 years ago - 1 comment

#25 - Allow for higher dimensions of the reference space

Issue - State: closed - Opened by EmilieDel about 3 years ago

#24 - Add functionalities for spinal-cord dataset

Issue - State: open - Opened by EmilieDel about 3 years ago

#23 - Slice Nissl with same angle as raw coronal/sagittal slices

Issue - State: open - Opened by EmilieDel about 3 years ago

#22 - Move dev code for AIBS true mapping to repo

Issue - State: open - Opened by EmilieDel about 3 years ago - 1 comment

#21 - Put the package on PyPi and add banners in the README.

Issue - State: closed - Opened by EmilieDel about 3 years ago - 1 comment

#20 - Create DOI and add a banner in the README.

Issue - State: closed - Opened by EmilieDel about 3 years ago - 1 comment

#19 - Create documentation

Pull Request - State: closed - Opened by EmilieDel about 3 years ago - 1 comment

#18 - Create Documentation

Issue - State: closed - Opened by EmilieDel about 3 years ago

#17 - Fix license badge link URL

Pull Request - State: closed - Opened by Stannislav about 3 years ago

#16 - Add a CLI

Pull Request - State: closed - Opened by Stannislav about 3 years ago

#11 - Create method warping the images

Issue - State: closed - Opened by EmilieDel about 3 years ago - 1 comment

#9 - Clean DisplacementField class

Issue - State: closed - Opened by EmilieDel about 3 years ago - 1 comment

#7 - Use appdir to get the cache folder

Issue - State: closed - Opened by EmilieDel about 3 years ago

#5 - Remove duplicate cache folder variable

Issue - State: closed - Opened by Stannislav about 3 years ago