Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / Blue-Matter/SAMtool issues and pull requests
#58 - plotRCM enhancements
Issue -
State: open - Opened by tcarruth 5 months ago
Labels: enhancement
#57 - Identify non-converged simulations in RCM plots
Issue -
State: closed - Opened by AdrianHordyk 6 months ago
- 1 comment
Labels: enhancement
#56 - RCMfit@Misc is not to be trifled with!
Issue -
State: open - Opened by tcarruth 7 months ago
- 1 comment
Labels: enhancement
#55 - Observed mean length (black) not appearing in Fleet tab of plot(RCMfit)
Issue -
State: closed - Opened by tcarruth 8 months ago
Labels: bug
#54 - Truncated histograms and higher resolution histograms in plot(RCMfit)
Issue -
State: closed - Opened by tcarruth 8 months ago
- 1 comment
Labels: enhancement
#53 - cpars$SLarray error message when resampling for depletion
Issue -
State: open - Opened by tcarruth 8 months ago
Labels: bug
#52 - SS2OM is failing to populate the Wt_age_C array for the first age class:
Issue -
State: open - Opened by tcarruth 8 months ago
Labels: bug
#51 - Fits to size comps in RCM appear not to match the estimated selectivity curve - Chile anchoveta-xv-ii-2023 case study
Issue -
State: open - Opened by AdrianHordyk 10 months ago
Labels: bug
#50 - For some reason the L50 and L50_95 parameters that control maturity at length are not being passed along to the OM properly
Issue -
State: closed - Opened by tcarruth 11 months ago
- 2 comments
Labels: bug
#49 - Add maturity-at-length and length-weight plots to the plot(RCMfit) html file (the life history tab). Not urgent!!
Issue -
State: closed - Opened by tcarruth 11 months ago
Labels: enhancement
#48 - plot(RCMfit) does not report the correct ESS_CAL in the length fit plots of the RCMoutput tab
Issue -
State: closed - Opened by tcarruth 11 months ago
Labels: bug
#47 - RCM nll_C should be an ivector (or just use condition)
Issue -
State: closed - Opened by quang-huynh 11 months ago
#46 - Fix compare_RCM
Issue -
State: closed - Opened by quang-huynh 11 months ago
#45 - Convergence information for plot(RCMfit)
Issue -
State: closed - Opened by tcarruth 11 months ago
- 1 comment
Labels: enhancement
#44 - Re-do newton F search in logit space
Issue -
State: closed - Opened by quang-huynh about 1 year ago
- 1 comment
#43 - Simulate RCM index error for operating model
Issue -
State: open - Opened by quang-huynh about 1 year ago
#42 - Add C_units to RCMdata
Issue -
State: open - Opened by quang-huynh about 1 year ago
#41 - Fleet specific catch/effort conditioning in RCM
Issue -
State: closed - Opened by quang-huynh about 1 year ago
#40 - error with when run SCA function
Issue -
State: closed - Opened by MauroMardones over 1 year ago
- 1 comment
#39 - More comp residual plots
Issue -
State: closed - Opened by quang-huynh over 1 year ago
#38 - Add spawn_timing to RCM
Issue -
State: closed - Opened by quang-huynh over 1 year ago
#37 - Document when RCMdata@C_hist must be greater than 0
Issue -
State: closed - Opened by quang-huynh over 1 year ago
- 1 comment
#36 - Second plot in the 'correlations' panel of plot(RCMfit) report has a wrongly labelled y axis - its not natural mortality!
Issue -
State: closed - Opened by tcarruth over 1 year ago
Labels: bug
#35 - Add MSY prior to SP
Issue -
State: closed - Opened by quang-huynh over 1 year ago
#34 - Update retrospective_AM
Issue -
State: closed - Opened by quang-huynh over 1 year ago
#33 - r_prior ineffective in SP.hpp
Issue -
State: closed - Opened by Henning-Winker over 1 year ago
- 3 comments
#32 - Minor typo in help documentation for `retrospective`
Issue -
State: closed - Opened by AdrianHordyk over 1 year ago
#31 - OMs produced by RCMfit include cpars$Data but this does not include dimnames (unlike SS2Data)
Issue -
State: closed - Opened by tcarruth over 1 year ago
- 1 comment
Labels: enhancement
#30 - Add hockey stick SRR to RCM
Issue -
State: closed - Opened by quang-huynh almost 2 years ago
- 1 comment
#29 - no default value of `s` for `make_interim_MP(type="buffer")` when `do_Assessment@conv==FALSE`
Issue -
State: closed - Opened by nikolaifish over 2 years ago
- 2 comments
#28 - default TAC for interim MP when SCA doesn't converge?
Issue -
State: closed - Opened by nikolaifish over 2 years ago
- 2 comments
#27 - Convert TMB models (esp. RCM) to stan models
Issue -
State: open - Opened by quang-huynh almost 3 years ago
- 1 comment
#26 - Fix CRAN issue with VPA example
Issue -
State: closed - Opened by quang-huynh almost 3 years ago
#25 - Check for NA values in CAL and IAL slots of the RCMdata class
Issue -
State: closed - Opened by tcarruth almost 3 years ago
Labels: enhancement
#24 - Setup RCM as an estimation model in closed-loop
Issue -
State: open - Opened by quang-huynh about 3 years ago
#23 - Estimate a random walk M in RCM
Issue -
State: open - Opened by quang-huynh about 3 years ago
#22 - HCR functions returns NA with negative estimates
Issue -
State: closed - Opened by quang-huynh about 3 years ago
#21 - Add interim MPs to package
Issue -
State: closed - Opened by quang-huynh about 3 years ago
#20 - Fix beta to 1 when RCM is conditioned with Index
Issue -
State: closed - Opened by AdrianHordyk about 3 years ago
Labels: enhancement
#19 - RCM(OM,Data, selectivity='dome') doesn't work
Issue -
State: closed - Opened by AdrianHordyk about 3 years ago
- 2 comments
#18 - histograms in RCM aren't correct when all values are the same
Issue -
State: closed - Opened by AdrianHordyk about 3 years ago
- 1 comment
Labels: bug
#17 - SCA with density dependent M
Issue -
State: closed - Opened by quang-huynh over 3 years ago
- 1 comment
#16 - Self-testing for the RCM and assess models
Issue -
State: open - Opened by quang-huynh over 3 years ago
- 3 comments
#15 - RCM needs a named class of data input (the list format for the data)
Issue -
State: closed - Opened by tcarruth over 3 years ago
- 1 comment
Labels: enhancement
#14 - M prior for DD and SCA
Issue -
State: closed - Opened by quang-huynh over 3 years ago
#13 - plot.RCModel should include survey composition fits for all the simulations in the 'RCM output' tab
Issue -
State: closed - Opened by tcarruth over 3 years ago
- 1 comment
Labels: enhancement
#12 - Update tests directory
Issue -
State: open - Opened by quang-huynh over 3 years ago
#11 - Add likelihood component to catches when RCM conditions on effort
Issue -
State: closed - Opened by quang-huynh over 3 years ago
- 1 comment
#10 - Reduce/simplify SCA code
Issue -
State: closed - Opened by quang-huynh over 3 years ago
- 1 comment
#9 - Build Jacobian of likelihoods into RCM report
Issue -
State: closed - Opened by quang-huynh over 3 years ago
#8 - Build out functions for ref pt calculator
Issue -
State: closed - Opened by quang-huynh almost 4 years ago
- 1 comment
#7 - RCM priors
Issue -
State: closed - Opened by quang-huynh almost 4 years ago
- 1 comment
#6 - Add a RCM, data-rich object example
Issue -
State: closed - Opened by quang-huynh almost 4 years ago
#5 - Weird issue with plot generic
Issue -
State: closed - Opened by quang-huynh almost 4 years ago
#4 - Move multiMSE vignette to OMtool
Issue -
State: closed - Opened by quang-huynh almost 4 years ago
#3 - Update SCA, VPA assess models for age-0
Issue -
State: closed - Opened by quang-huynh almost 4 years ago
- 1 comment
#2 - Rename SRA_scope to RCM
Issue -
State: closed - Opened by quang-huynh almost 4 years ago
#1 - Move swordfish and Albacore_TwoFleet to OMtool
Issue -
State: closed - Opened by quang-huynh almost 4 years ago
- 1 comment