Ecosyste.ms: Issues

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GitHub / Blue-Matter/SAMtool issues and pull requests

#58 - plotRCM enhancements

Issue - State: open - Opened by tcarruth 5 months ago
Labels: enhancement

#57 - Identify non-converged simulations in RCM plots

Issue - State: closed - Opened by AdrianHordyk 6 months ago - 1 comment
Labels: enhancement

#56 - RCMfit@Misc is not to be trifled with!

Issue - State: open - Opened by tcarruth 7 months ago - 1 comment
Labels: enhancement

#55 - Observed mean length (black) not appearing in Fleet tab of plot(RCMfit)

Issue - State: closed - Opened by tcarruth 8 months ago
Labels: bug

#54 - Truncated histograms and higher resolution histograms in plot(RCMfit)

Issue - State: closed - Opened by tcarruth 8 months ago - 1 comment
Labels: enhancement

#53 - cpars$SLarray error message when resampling for depletion

Issue - State: open - Opened by tcarruth 8 months ago
Labels: bug

#47 - RCM nll_C should be an ivector (or just use condition)

Issue - State: closed - Opened by quang-huynh 11 months ago

#46 - Fix compare_RCM

Issue - State: closed - Opened by quang-huynh 11 months ago

#45 - Convergence information for plot(RCMfit)

Issue - State: closed - Opened by tcarruth 11 months ago - 1 comment
Labels: enhancement

#44 - Re-do newton F search in logit space

Issue - State: closed - Opened by quang-huynh about 1 year ago - 1 comment

#43 - Simulate RCM index error for operating model

Issue - State: open - Opened by quang-huynh about 1 year ago

#42 - Add C_units to RCMdata

Issue - State: open - Opened by quang-huynh about 1 year ago

#41 - Fleet specific catch/effort conditioning in RCM

Issue - State: closed - Opened by quang-huynh about 1 year ago

#40 - error with when run SCA function

Issue - State: closed - Opened by MauroMardones over 1 year ago - 1 comment

#39 - More comp residual plots

Issue - State: closed - Opened by quang-huynh over 1 year ago

#38 - Add spawn_timing to RCM

Issue - State: closed - Opened by quang-huynh over 1 year ago

#37 - Document when RCMdata@C_hist must be greater than 0

Issue - State: closed - Opened by quang-huynh over 1 year ago - 1 comment

#35 - Add MSY prior to SP

Issue - State: closed - Opened by quang-huynh over 1 year ago

#34 - Update retrospective_AM

Issue - State: closed - Opened by quang-huynh over 1 year ago

#33 - r_prior ineffective in SP.hpp

Issue - State: closed - Opened by Henning-Winker over 1 year ago - 3 comments

#32 - Minor typo in help documentation for `retrospective`

Issue - State: closed - Opened by AdrianHordyk over 1 year ago

#31 - OMs produced by RCMfit include cpars$Data but this does not include dimnames (unlike SS2Data)

Issue - State: closed - Opened by tcarruth over 1 year ago - 1 comment
Labels: enhancement

#30 - Add hockey stick SRR to RCM

Issue - State: closed - Opened by quang-huynh almost 2 years ago - 1 comment

#28 - default TAC for interim MP when SCA doesn't converge?

Issue - State: closed - Opened by nikolaifish over 2 years ago - 2 comments

#27 - Convert TMB models (esp. RCM) to stan models

Issue - State: open - Opened by quang-huynh almost 3 years ago - 1 comment

#26 - Fix CRAN issue with VPA example

Issue - State: closed - Opened by quang-huynh almost 3 years ago

#25 - Check for NA values in CAL and IAL slots of the RCMdata class

Issue - State: closed - Opened by tcarruth almost 3 years ago
Labels: enhancement

#24 - Setup RCM as an estimation model in closed-loop

Issue - State: open - Opened by quang-huynh about 3 years ago

#23 - Estimate a random walk M in RCM

Issue - State: open - Opened by quang-huynh about 3 years ago

#22 - HCR functions returns NA with negative estimates

Issue - State: closed - Opened by quang-huynh about 3 years ago

#21 - Add interim MPs to package

Issue - State: closed - Opened by quang-huynh about 3 years ago

#20 - Fix beta to 1 when RCM is conditioned with Index

Issue - State: closed - Opened by AdrianHordyk about 3 years ago
Labels: enhancement

#19 - RCM(OM,Data, selectivity='dome') doesn't work

Issue - State: closed - Opened by AdrianHordyk about 3 years ago - 2 comments

#18 - histograms in RCM aren't correct when all values are the same

Issue - State: closed - Opened by AdrianHordyk about 3 years ago - 1 comment
Labels: bug

#17 - SCA with density dependent M

Issue - State: closed - Opened by quang-huynh over 3 years ago - 1 comment

#16 - Self-testing for the RCM and assess models

Issue - State: open - Opened by quang-huynh over 3 years ago - 3 comments

#15 - RCM needs a named class of data input (the list format for the data)

Issue - State: closed - Opened by tcarruth over 3 years ago - 1 comment
Labels: enhancement

#14 - M prior for DD and SCA

Issue - State: closed - Opened by quang-huynh over 3 years ago

#13 - plot.RCModel should include survey composition fits for all the simulations in the 'RCM output' tab

Issue - State: closed - Opened by tcarruth over 3 years ago - 1 comment
Labels: enhancement

#12 - Update tests directory

Issue - State: open - Opened by quang-huynh over 3 years ago

#11 - Add likelihood component to catches when RCM conditions on effort

Issue - State: closed - Opened by quang-huynh over 3 years ago - 1 comment

#10 - Reduce/simplify SCA code

Issue - State: closed - Opened by quang-huynh over 3 years ago - 1 comment

#9 - Build Jacobian of likelihoods into RCM report

Issue - State: closed - Opened by quang-huynh over 3 years ago

#8 - Build out functions for ref pt calculator

Issue - State: closed - Opened by quang-huynh almost 4 years ago - 1 comment

#7 - RCM priors

Issue - State: closed - Opened by quang-huynh almost 4 years ago - 1 comment

#6 - Add a RCM, data-rich object example

Issue - State: closed - Opened by quang-huynh almost 4 years ago

#5 - Weird issue with plot generic

Issue - State: closed - Opened by quang-huynh almost 4 years ago

#4 - Move multiMSE vignette to OMtool

Issue - State: closed - Opened by quang-huynh almost 4 years ago

#3 - Update SCA, VPA assess models for age-0

Issue - State: closed - Opened by quang-huynh almost 4 years ago - 1 comment

#2 - Rename SRA_scope to RCM

Issue - State: closed - Opened by quang-huynh almost 4 years ago

#1 - Move swordfish and Albacore_TwoFleet to OMtool

Issue - State: closed - Opened by quang-huynh almost 4 years ago - 1 comment