Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / BiomedSciAI/fuse-med-ml issues and pull requests

#296 - multiprocessing improvements

Pull Request - State: closed - Opened by YoelShoshan almost 2 years ago

#295 - backbone resnet and resnet 3d - better pretrained support

Issue - State: open - Opened by mosheraboh almost 2 years ago

#294 - Support for pl2 in simple mnist example

Pull Request - State: closed - Opened by smartdanny almost 2 years ago

#293 - add backbone mvit

Pull Request - State: closed - Opened by liamhazan almost 2 years ago - 1 comment

#292 - Support pytorch lightning 2.0.0

Issue - State: closed - Opened by mosheraboh almost 2 years ago
Labels: enhancement

#291 - few fixes to enable pl2 - and limit pl version until all tests will …

Pull Request - State: closed - Opened by mosheraboh almost 2 years ago - 1 comment

#290 - Failure in running mutliple GPUs with dp strategy for ehr_transformer

Issue - State: open - Opened by ellabarkan almost 2 years ago - 1 comment
Labels: bug, wontfix

#289 - Make logging optional

Pull Request - State: closed - Opened by smartdanny almost 2 years ago

#288 - perplexity impl + post collect func process fix

Pull Request - State: closed - Opened by mosheraboh almost 2 years ago

#287 - 🧹 Integrate `nb-clean`

Pull Request - State: closed - Opened by SagiPolaczek almost 2 years ago

#285 - Adding participation in PyTorch Ecosystem to Readme

Pull Request - State: closed - Opened by simona-rc almost 2 years ago

#284 - Caching should only be done on rank 0

Issue - State: open - Opened by smartdanny almost 2 years ago - 1 comment
Labels: bug

#283 - Mention in readme that FuseMedML is part of PyTorch ecosystem

Issue - State: closed - Opened by mosheraboh almost 2 years ago
Labels: enhancement

#282 - Yoels

Pull Request - State: closed - Opened by YoelShoshan almost 2 years ago

#281 - Pl model save + export the entire dataset (all keys) to dataframe

Pull Request - State: closed - Opened by mosheraboh almost 2 years ago - 1 comment

#280 - Update hello_world.ipynb

Pull Request - State: closed - Opened by alex-golts almost 2 years ago

#278 - Update hello_world.ipynb example

Issue - State: closed - Opened by simona-rc almost 2 years ago - 3 comments
Labels: bug

#277 - make examples subpackage (fuse_examples)

Pull Request - State: closed - Opened by mosheraboh almost 2 years ago - 4 comments

#276 - remove examples. prefix

Pull Request - State: closed - Opened by alex-golts almost 2 years ago

#275 - Fixes for the Hello World notebook

Pull Request - State: closed - Opened by SagiPolaczek almost 2 years ago

#274 - made knight datamodule for DDP support

Pull Request - State: open - Opened by smartdanny almost 2 years ago

#273 - NDict API change - missing pre-existing features

Issue - State: closed - Opened by avihu111 almost 2 years ago - 2 comments
Labels: bug

#272 - Display CI output on Jenkins' console while building

Issue - State: open - Opened by SagiPolaczek about 2 years ago
Labels: enhancement, DEV

#271 - `NDict` optimization

Pull Request - State: closed - Opened by SagiPolaczek about 2 years ago - 1 comment
Labels: enhancement

#270 - ddp_fix

Pull Request - State: closed - Opened by smartdanny about 2 years ago - 6 comments

#269 - add multi-label metric cladd and func

Pull Request - State: closed - Opened by egozi about 2 years ago

#268 - optimized train time for a use case of small samples and large batch

Pull Request - State: closed - Opened by mosheraboh about 2 years ago

#267 - Uncollate is not needed and slows down training

Issue - State: closed - Opened by avihu111 about 2 years ago - 1 comment
Labels: bug

#266 - add props to dataset and pipelines + small fix to cacher

Pull Request - State: closed - Opened by michalozeryflato about 2 years ago

#265 - Ndict support hydra

Pull Request - State: closed - Opened by michalozeryflato about 2 years ago - 1 comment

#264 - fix bug with specific binary input format

Pull Request - State: closed - Opened by alex-golts about 2 years ago

#263 - update JOSS paper citation and badge

Pull Request - State: closed - Opened by alex-golts about 2 years ago

#262 - support shallow copy of pipelines

Pull Request - State: closed - Opened by michalozeryflato about 2 years ago - 1 comment

#261 - Fix the installation protocol so it will be compatible with A100 GPU and CCC's CUDA version

Issue - State: closed - Opened by egozi about 2 years ago - 2 comments
Labels: bug

#260 - not strict mode in ProjectPatchesTokenizer

Pull Request - State: closed - Opened by avihu111 about 2 years ago

#259 - allow non-int sample ids in DatasetDefault

Pull Request - State: closed - Opened by alex-golts about 2 years ago

#258 - Allow non-int sample ids in DatasetDefault

Pull Request - State: closed - Opened by alex-golts about 2 years ago

#257 - a more configureable resnet3d implementation

Pull Request - State: closed - Opened by avihu111 about 2 years ago

#256 - Ehr transformer example

Pull Request - State: closed - Opened by ellabarkan about 2 years ago

#255 - fix `LightningDeprecationWarning`

Issue - State: closed - Opened by SagiPolaczek about 2 years ago - 1 comment
Labels: bug, good first issue

#254 - `torchvision` version upper bound fix

Pull Request - State: closed - Opened by SagiPolaczek about 2 years ago

#253 - Add a flag for clearml start function to enable/disable it

Issue - State: open - Opened by mosheraboh about 2 years ago
Labels: enhancement

#252 - Remove `torchvision` version upper bound

Issue - State: closed - Opened by SagiPolaczek about 2 years ago
Labels: bug

#251 - Additional model - `CrossAttentionTransformerEncoder`

Pull Request - State: closed - Opened by SagiPolaczek about 2 years ago

#250 - urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] on CICD

Issue - State: open - Opened by SagiPolaczek about 2 years ago
Labels: bug

#249 - CICD fix (!)

Pull Request - State: closed - Opened by SagiPolaczek about 2 years ago

#248 - Shatz caching fixes

Pull Request - State: open - Opened by smartdanny about 2 years ago

#247 - Expose max allowed used space

Pull Request - State: closed - Opened by smartdanny about 2 years ago

#246 - add down sample option to BatchSamplerDefault

Pull Request - State: closed - Opened by mosheraboh about 2 years ago

#245 - Ehr transformer ICU example

Pull Request - State: closed - Opened by ellabarkan about 2 years ago - 2 comments

#244 - support not specifying number of channels in ModelMultiHead

Pull Request - State: closed - Opened by alex-golts about 2 years ago - 2 comments

#240 - Simple MNIST Example

Pull Request - State: closed - Opened by smartdanny about 2 years ago - 3 comments

#239 - CICD fix

Pull Request - State: closed - Opened by mosheraboh about 2 years ago - 1 comment

#238 - fix learning rate and added config options

Pull Request - State: closed - Opened by liamhazan about 2 years ago - 1 comment

#237 - Auc metric fix

Pull Request - State: closed - Opened by avihu111 about 2 years ago

#236 - suggested changes for JOSS

Pull Request - State: closed - Opened by SagiPolaczek about 2 years ago

#235 - knight data download script

Pull Request - State: closed - Opened by alex-golts about 2 years ago

#234 - raise exception in case of str input/outputs

Pull Request - State: closed - Opened by smartdanny about 2 years ago

#233 - Some changes from DTI task (Add doc' and some small features)

Pull Request - State: closed - Opened by SagiPolaczek about 2 years ago

#232 - update DL readme according to JOSS reviewer comments

Pull Request - State: closed - Opened by alex-golts about 2 years ago

#231 - Ukbb changes -ensemble of multi-modal survival models

Pull Request - State: closed - Opened by michalozeryflato about 2 years ago - 2 comments

#230 - Add example to Fuse.dl section in the Fuse-med ML paper

Issue - State: closed - Opened by anupamajha1 about 2 years ago - 3 comments

#229 - State of the field section missing from the fuse-med-ML paper

Issue - State: closed - Opened by anupamajha1 about 2 years ago - 2 comments

#228 - References missing in the Fuse-med-ML paper

Issue - State: closed - Opened by anupamajha1 about 2 years ago - 2 comments

#225 - remove protobuf from dependencies

Pull Request - State: closed - Opened by alex-golts about 2 years ago

#224 - mod for peptide design

Pull Request - State: closed - Opened by mosheraboh about 2 years ago

#223 - Can't install both fuse and tensorflow

Issue - State: closed - Opened by alex-golts about 2 years ago - 2 comments
Labels: help wanted, question

#220 - Add OpToNestedTensor (Prototype, for ref)

Pull Request - State: closed - Opened by SagiPolaczek about 2 years ago - 2 comments

#214 - add `isort` as a pre-commit hook

Issue - State: closed - Opened by SagiPolaczek about 2 years ago
Labels: enhancement, good first issue

#209 - Apply pre-commit changes (ex. `mypy`) on all files

Pull Request - State: closed - Opened by SagiPolaczek over 2 years ago

#201 - Dummy PR - testing CI

Pull Request - State: closed - Opened by SagiPolaczek over 2 years ago

#189 - create documentation project on Read the Docs

Issue - State: open - Opened by SagiPolaczek over 2 years ago - 7 comments
Labels: documentation, enhancement, good first issue

#188 - integrate clearml to track experiments

Issue - State: closed - Opened by mosheraboh over 2 years ago - 3 comments
Labels: enhancement

#186 - Apply `mypy` typing checker to all files

Issue - State: closed - Opened by SagiPolaczek over 2 years ago - 1 comment
Labels: enhancement, good first issue, up-for-grabs

#185 - Auto-Detect when changing params in `dataset_balanced_division_to_folds(reset_split=False)`

Issue - State: open - Opened by SagiPolaczek over 2 years ago - 1 comment
Labels: enhancement, good first issue

#181 - Caching - print the pipeline representation when different hash detected

Issue - State: closed - Opened by mosheraboh over 2 years ago - 1 comment
Labels: enhancement

#178 - A package named "examples" is installed separately from "fuse_examples"

Issue - State: closed - Opened by alex-golts over 2 years ago - 1 comment
Labels: bug, good first issue

#167 - replaced manager with lightning

Pull Request - State: closed - Opened by itaijj over 2 years ago

#164 - classification/regression Heads

Pull Request - State: closed - Opened by liamhazan over 2 years ago

#148 - lr scheduling

Issue - State: closed - Opened by egozi over 2 years ago - 1 comment
Labels: enhancement

#147 - 🧲 Op MRI (Duke and Prostate-X)

Pull Request - State: closed - Opened by SagiPolaczek over 2 years ago - 9 comments
Labels: enhancement, example

#146 - Fix bug and handle no extension files

Pull Request - State: closed - Opened by alex-golts over 2 years ago

#140 - 📋 Add issue templates

Pull Request - State: closed - Opened by SagiPolaczek over 2 years ago

#129 - Ukbb MRI

Pull Request - State: closed - Opened by itaijj over 2 years ago

#126 - Main readme redesign

Pull Request - State: closed - Opened by YoelShoshan over 2 years ago

#110 - Yoels code review

Pull Request - State: closed - Opened by YoelShoshan over 2 years ago - 1 comment