Bioconductor/pkgrevdocs issues and pull requests

#133 - add note about generics from base / utils functions, closes #131

Pull Request - State: closed - Opened by LiNk-NY 2 months ago

#132 - add bug fixes due to API changes section, closes #130

Pull Request - State: closed - Opened by LiNk-NY 2 months ago

#131 - add note about conflicting new generics and base / utils functions

Issue - State: closed - Opened by LiNk-NY 3 months ago

#130 - abrupt "bug" fixes due to API changes should be documented

Issue - State: closed - Opened by LiNk-NY 3 months ago

#129 - Fixes #128

Pull Request - State: closed - Opened by lshep 3 months ago

#128 - Package review checklist broken

Issue - State: closed - Opened by PeteHaitch 3 months ago

#127 - Update Sys Deps

Pull Request - State: closed - Opened by lshep 3 months ago

#126 - swap template link

Pull Request - State: closed - Opened by ttriche 3 months ago

#125 - update the check time in the querying web resources section

Pull Request - State: closed - Opened by LiNk-NY 4 months ago

#124 - add tinytest to list of recommended testing suites

Pull Request - State: closed - Opened by LiNk-NY 5 months ago

#123 - Link to devel branch and spelling fixes

Pull Request - State: closed - Opened by jonocarroll 5 months ago - 2 comments

#122 - add details about vignette index entry

Pull Request - State: closed - Opened by mikelove 10 months ago

#122 - add details about vignette index entry

Pull Request - State: closed - Opened by mikelove 10 months ago

#121 - Update dataset deprecation guidelines

Pull Request - State: closed - Opened by LiNk-NY 10 months ago - 2 comments

#120 - Dataset deprecation guidelines result in errors

Issue - State: closed - Opened by andregrageda 11 months ago - 2 comments

#120 - Dataset deprecation guidelines result in errors

Issue - State: closed - Opened by andregrageda 11 months ago - 2 comments

#119 - Reducing package file size by reducing screenshot sizes

Pull Request - State: closed - Opened by federicomarini 11 months ago - 2 comments

#114 - Fix non-existing branch error in section "Subversion to Git Transition"

Pull Request - State: open - Opened by mfasold over 1 year ago - 2 comments

#114 - Fix non-existing branch error in section "Subversion to Git Transition"

Pull Request - State: open - Opened by mfasold over 1 year ago - 2 comments

#108 - Indicate how to use bioc-devel with R-devel in the mid-April to mid-October time frame?

Issue - State: closed - Opened by mtmorgan almost 2 years ago - 18 comments

#108 - Indicate how to use bioc-devel with R-devel in the mid-April to mid-October time frame?

Issue - State: closed - Opened by mtmorgan almost 2 years ago - 18 comments

#100 - clarify numeric indices in code efficiency section

Pull Request - State: closed - Opened by LiNk-NY almost 2 years ago

#99 - Fix link

Pull Request - State: closed - Opened by lshep almost 2 years ago

#98 - update FAQ based on feedback, closes #97

Pull Request - State: closed - Opened by LiNk-NY almost 2 years ago
Labels: documentation

#97 - Update FAQ based on feedback

Issue - State: closed - Opened by LiNk-NY almost 2 years ago - 1 comment
Labels: documentation

#96 - Make book releases, PDF output and Zenodo DOIs

Issue - State: open - Opened by sneumann about 2 years ago - 3 comments

#95 - rename master to devel in documentation, resolves #79

Pull Request - State: closed - Opened by LiNk-NY about 2 years ago

#94 - update README.md and GHA to use devel branch

Pull Request - State: closed - Opened by LiNk-NY about 2 years ago

#93 - rename master to devel in documentation, resolves #79

Pull Request - State: closed - Opened by LiNk-NY about 2 years ago - 3 comments

#92 - Change repo branch from master to devel on github.com/Bioconductor/pkgrevdocs

Issue - State: closed - Opened by LiNk-NY about 2 years ago

#91 - update reviewer section

Pull Request - State: closed - Opened by lshep about 2 years ago

#90 - Add instructions for using filter-repo to remove large files

Pull Request - State: closed - Opened by nsheff about 2 years ago

#89 - Add troubleshooting section for

Pull Request - State: closed - Opened by lshep about 2 years ago

#88 - Create contrib-faq.Rmd

Pull Request - State: closed - Opened by vjcitn about 2 years ago - 2 comments

#87 - Update c-and-fortran.Rmd

Pull Request - State: closed - Opened by vjcitn about 2 years ago

#86 - Update index.Rmd

Pull Request - State: closed - Opened by vjcitn about 2 years ago - 1 comment

#85 - Add notes regarding BiocIO

Pull Request - State: closed - Opened by LiNk-NY about 2 years ago - 2 comments

#84 - add branch renaming FAQ page

Pull Request - State: closed - Opened by LiNk-NY about 2 years ago

#83 - Update deprecation.Rmd

Pull Request - State: closed - Opened by PeteHaitch about 2 years ago

#82 - add night mode

Issue - State: open - Opened by LiNk-NY about 2 years ago
Labels: enhancement

#81 - Note that we do not accept restrictive licenses

Issue - State: open - Opened by LiNk-NY about 2 years ago

#80 - Create a chapter for the master to devel transition in https://contributions.bioconductor.org

Issue - State: closed - Opened by LiNk-NY about 2 years ago - 4 comments
Labels: documentation

#79 - Replace master with devel in Bioc Guidelines (https://contributions.bioconductor.org)

Issue - State: closed - Opened by jwokaty about 2 years ago - 1 comment
Labels: documentation

#78 - Remove MSnbase, focus on Spectra.

Pull Request - State: closed - Opened by lgatto about 2 years ago

#77 - Update version of base action

Pull Request - State: closed - Opened by kevinrue over 2 years ago

#76 - Update version of base action

Pull Request - State: closed - Opened by lshep over 2 years ago - 2 comments

#75 - Update NEWS file section with example from SummarizedExperiment

Pull Request - State: closed - Opened by LiNk-NY over 2 years ago - 2 comments

#74 - Add troubleshooting for missing system requirement

Pull Request - State: closed - Opened by zeehio over 2 years ago

#73 - Update package-submission.Rmd

Pull Request - State: closed - Opened by vjcitn over 2 years ago

#72 - 'Collates' should be 'Collate' in `DESCRIPTION`

Pull Request - State: closed - Opened by PeteHaitch over 2 years ago

#71 - add data env template to exported data section

Pull Request - State: closed - Opened by LiNk-NY over 2 years ago

#70 - Recommend .Rmd over .Rnw

Pull Request - State: closed - Opened by jwokaty over 2 years ago

#69 - Start populating the page about Shiny apps.

Pull Request - State: closed - Opened by kevinrue over 2 years ago

#68 - 12.2 has Sweave before Rmd

Issue - State: closed - Opened by vjcitn over 2 years ago - 1 comment

#67 - Add a chapter about debugging Rd links

Pull Request - State: closed - Opened by kevinrue over 2 years ago

#66 - add Imports to DESCRIPTION to avoid a glitch with local renv

Pull Request - State: closed - Opened by kevinrue over 2 years ago

#65 - Fixes #64

Pull Request - State: closed - Opened by lshep almost 3 years ago

#64 - Remove recommendation of merging master into release

Issue - State: closed - Opened by LiNk-NY almost 3 years ago - 4 comments

#63 - Fix github deploy

Pull Request - State: closed - Opened by kevinrue almost 3 years ago

#62 - Update vignette requirements and add missing deprecation section

Pull Request - State: closed - Opened by lshep almost 3 years ago

#61 - move over how to deprecate help file

Issue - State: closed - Opened by lshep almost 3 years ago

#60 - update troubleshooting doc

Pull Request - State: closed - Opened by lshep almost 3 years ago - 1 comment

#59 - New requirements for package submissions

Issue - State: closed - Opened by lgatto almost 3 years ago - 1 comment

#58 - Fix links from Kevin's repo to pkgrevodocs

Pull Request - State: closed - Opened by lgatto almost 3 years ago

#57 - remove mention of renv in README

Pull Request - State: closed - Opened by kevinrue almost 3 years ago - 1 comment

#56 - add more references for depends, import, suggest

Pull Request - State: closed - Opened by lshep almost 3 years ago

#55 - Fix links

Pull Request - State: closed - Opened by lshep almost 3 years ago

#54 - move over other help file

Issue - State: open - Opened by lshep about 3 years ago - 3 comments

#53 - Reorganize Files

Pull Request - State: closed - Opened by lshep about 3 years ago

#52 - Start to reorganize files

Pull Request - State: closed - Opened by lshep about 3 years ago

#51 - Fix links to the DESCRIPTION file section

Pull Request - State: closed - Opened by jwokaty about 3 years ago

#50 - missing links under GitHub scenarios

Issue - State: closed - Opened by LiNk-NY about 3 years ago - 1 comment

#49 - move workflow-package information to non-software section

Pull Request - State: closed - Opened by lshep about 3 years ago - 2 comments

#48 - Add Workflow Package Information

Pull Request - State: closed - Opened by lshep about 3 years ago

#47 - Add Workflow package information

Pull Request - State: closed - Opened by lshep about 3 years ago

#46 - guidance on managing dependencies?

Issue - State: closed - Opened by vjcitn about 3 years ago

#45 - improve "third party code" section

Issue - State: open - Opened by vjcitn about 3 years ago - 1 comment

#44 - Update BiocCheck call to include new-package flag

Pull Request - State: closed - Opened by lshep about 3 years ago

#43 - Remove reference to renv from the README

Issue - State: closed - Opened by kevinrue about 3 years ago - 2 comments

#42 - Update review-resources-and-tools.Rmd

Pull Request - State: closed - Opened by lshep about 3 years ago - 1 comment

#41 - update git docs regarding cherry-picking and add tutorial video

Pull Request - State: closed - Opened by LiNk-NY over 3 years ago

#40 - Use YAML file to control order of Rmd files

Pull Request - State: closed - Opened by kevinrue over 3 years ago - 1 comment

#39 - Add URL to repository on index page

Pull Request - State: closed - Opened by kevinrue over 3 years ago

#38 - Remove Rmd file numbering; use _bookdown.yml instead

Issue - State: closed - Opened by kevinrue over 3 years ago - 2 comments

#37 - Add the link to the github repo on the book index page

Issue - State: closed - Opened by kevinrue over 3 years ago

#36 - Update New Package Workflow with main branch notes

Pull Request - State: closed - Opened by LiNk-NY over 3 years ago

#35 - Sections

Pull Request - State: closed - Opened by LiNk-NY over 3 years ago

#34 - biocViews

Issue - State: closed - Opened by llrs over 3 years ago - 4 comments

#33 - add Git section, closes #28

Pull Request - State: closed - Opened by LiNk-NY over 3 years ago