Bioconductor/RaggedExperiment issues and pull requests

#29 - dimnames(x) <- value was not working as expected for RaggedExperiment

Issue - State: closed - Opened by yli110-stat697 about 1 year ago - 4 comments

#28 - ASCAT to RaggedExperiment vignette

Pull Request - State: closed - Opened by Lydia-King over 1 year ago - 2 comments

#27 - assays usage and constructor

Issue - State: closed - Opened by drighelli about 3 years ago - 10 comments

#26 - add sparseMatrix support for compact and sparseAssay

Pull Request - State: closed - Opened by LiNk-NY almost 4 years ago

#25 - High memory usage when using assay() on large RaggedExperiments

Issue - State: open - Opened by biobenkj over 4 years ago - 3 comments

#24 - no method or default for coercing “SimpleGRangesList” to “CompressedGRangesList”

Issue - State: closed - Opened by biobenkj almost 5 years ago - 9 comments

#23 - fix qreduceAssay qranges issue

Pull Request - State: closed - Opened by lgeistlinger over 5 years ago

#22 - Error in assay<- / assays<-

Issue - State: closed - Opened by lgeistlinger over 5 years ago - 2 comments

#21 - Error in colnames<-

Issue - State: closed - Opened by lgeistlinger over 5 years ago - 4 comments

#20 - qreduceAssay: inconsistency in simplifyReduce

Issue - State: closed - Opened by lgeistlinger about 6 years ago - 3 comments

#19 - qreduceSummarizedExperiment vs qreduceAssay argument names

Issue - State: closed - Opened by lwaldron about 6 years ago - 3 comments

#18 - Disentangling assays and rowData

Issue - State: open - Opened by lgeistlinger over 6 years ago - 8 comments

#17 - Error in rowData annotation (that also affects colData)

Issue - State: closed - Opened by lgeistlinger over 6 years ago - 3 comments

#16 - Return GRanges for *Assay method

Issue - State: closed - Opened by LiNk-NY over 6 years ago - 3 comments

#15 - Error in as(background, class(mcol)) : no method or default for coercing “logical” to “factor”

Issue - State: closed - Opened by dietmarfdz almost 7 years ago - 5 comments

#14 - remove RangedRaggedAssay coercion

Issue - State: closed - Opened by LiNk-NY almost 7 years ago - 1 comment

#13 - Ragged experiment from a sliced multi-assay experiment contains unexpected columns

Issue - State: closed - Opened by jason-weirather about 7 years ago - 5 comments

#12 - Update vignette with new arguments

Issue - State: closed - Opened by LiNk-NY about 7 years ago

#11 - Add real data vignette and data object

Issue - State: open - Opened by lwaldron about 7 years ago - 2 comments

#10 - qreduceAssay: simplifyReduce

Issue - State: closed - Opened by lgeistlinger about 7 years ago - 1 comment

#9 - summarization of individual calls/ranges across population

Issue - State: closed - Opened by lgeistlinger about 7 years ago - 12 comments

#8 - rowRanges with extra columns

Issue - State: closed - Opened by lgeistlinger about 7 years ago - 1 comment

#7 - clarify on man page of RaggedExperiment-package

Issue - State: closed - Opened by lgeistlinger about 7 years ago

#6 - colData<- is not supported