Ecosyste.ms: Issues

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GitHub / Bioconductor/MatrixGenerics issues and pull requests

#39 - Missing `matrixStats`'s `digits` arg in `rowQuantiles()`

Issue - State: closed - Opened by bnprks 26 days ago - 7 comments

#38 - Check and normalize 'center' argument before passing down to matrixStats

Pull Request - State: closed - Opened by hpages 7 months ago - 2 comments

#37 - Extend rowWeightedVars() to handle a matrix of weights

Issue - State: closed - Opened by GabrielHoffman 12 months ago - 3 comments

#36 - Update documentation of useNames in BioC 3.18

Pull Request - State: closed - Opened by PeteHaitch about 1 year ago - 2 comments

#35 - Update documentation of useNames in BioC 3.18?

Issue - State: closed - Opened by PeteHaitch about 1 year ago - 2 comments

#34 - Patch 1.12.1 not 100% backward compatible

Issue - State: closed - Opened by const-ae over 1 year ago - 2 comments

#33 - Apply matrixStats 1.0.0 breaking change for 'useNames' default [PR against devel]

Pull Request - State: closed - Opened by hpages over 1 year ago - 6 comments

#32 - Mitigate non-backward comptible changes in matrixStats 1.0.0 [PR against RELEASE_3_17]

Pull Request - State: closed - Opened by hpages over 1 year ago - 12 comments

#31 - 'useNames = TRUE' is the new default in matrixStats v1.0.0

Issue - State: closed - Opened by const-ae over 1 year ago - 11 comments

#30 - Error in MatrixGenerics while running Pando

Issue - State: closed - Opened by yojetsharma about 2 years ago - 1 comment

#29 - Fix #28

Pull Request - State: closed - Opened by const-ae over 2 years ago - 3 comments

#28 - Problem with the generic for 'rowLogSumExps()'

Issue - State: closed - Opened by rcastelo over 2 years ago - 7 comments

#27 - Issue with matrixStats (>= 0.60.1)

Issue - State: closed - Opened by evanbiederstedt about 3 years ago - 2 comments

#26 - Use formals() instead of args() in make_default_method_def() to address issue #25

Pull Request - State: closed - Opened by const-ae over 3 years ago - 8 comments

#25 - Function only found on second attempt for sparse input

Issue - State: closed - Opened by const-ae over 3 years ago - 1 comment

#23 - Heads up: New `useNames` argument coming

Issue - State: closed - Opened by HenrikBengtsson over 3 years ago - 15 comments

#22 - matrixStats: Next release will break MatrixGenerics 1.2.0 package tests

Issue - State: closed - Opened by HenrikBengtsson almost 4 years ago - 18 comments

#21 - CRAN instead of Bioconductor?

Issue - State: open - Opened by HenrikBengtsson almost 4 years ago - 8 comments

#20 - Argument 'center' package tests

Issue - State: closed - Opened by HenrikBengtsson almost 4 years ago - 4 comments

#18 - Remove scalar center arguments in test-api_compatibility

Pull Request - State: closed - Opened by const-ae about 4 years ago - 6 comments

#16 - Add default methods with user-friendly fallback mechanism

Pull Request - State: closed - Opened by hpages about 4 years ago - 10 comments

#15 - Dispatch on methods for matrix objects when table objects are supplied

Pull Request - State: closed - Opened by hpages about 4 years ago - 10 comments

#14 - Add drop and type to generic signature of [row|col]Quantiles

Pull Request - State: closed - Opened by const-ae about 4 years ago - 5 comments

#13 - Implement useful fallback method for colVars()

Pull Request - State: closed - Opened by hpages about 4 years ago - 3 comments

#12 - Fix remaining issues with missing links

Pull Request - State: closed - Opened by const-ae over 4 years ago - 2 comments

#11 - Warnings on Tokay2 about Missing Links in the Documentation

Issue - State: closed - Opened by const-ae over 4 years ago - 6 comments

#10 - Why ... for every default function?

Issue - State: closed - Opened by const-ae over 4 years ago - 2 comments

#9 - Why are only some `ties.method` in `rowRanks()` supported?

Issue - State: open - Opened by PeteHaitch over 4 years ago - 1 comment

#8 - Review for Bioconductor submission

Pull Request - State: closed - Opened by PeteHaitch over 4 years ago

#7 - BioConductor Submission

Issue - State: closed - Opened by const-ae over 4 years ago - 9 comments

#6 - Implement remaining functions

Pull Request - State: closed - Opened by const-ae over 4 years ago - 2 comments

#5 - Implement alternative generics for row/colMedians()

Pull Request - State: closed - Opened by const-ae about 5 years ago - 28 comments

#4 - Generics for a sparseMatrixStats package?

Issue - State: closed - Opened by const-ae about 5 years ago - 26 comments

#3 - Questions on use of setGenericImplicit()

Issue - State: open - Opened by PeteHaitch over 6 years ago
Labels: question

#2 - Where should these generics live?

Issue - State: open - Opened by PeteHaitch over 6 years ago - 5 comments
Labels: question

#1 - What is the contract for the return value of these generics?

Issue - State: open - Opened by PeteHaitch about 7 years ago - 2 comments
Labels: question