Bioconductor/IRanges issues and pull requests

#53 - Coercion to `CompressedList` discards `mcols`

Issue - State: closed - Opened by LTLA 8 months ago - 2 comments

#52 - R 4.3.3 Unable to install IRanges

Issue - State: closed - Opened by Tang-pro 11 months ago - 2 comments

#51 - `grepl` isn't working correctly for `CharacterList` with `ignore.case` and `fixed` enabled

Issue - State: closed - Opened by mjsteinbaugh about 1 year ago - 2 comments

#50 - Reverse IRangesList

Issue - State: closed - Opened by tbrittoborges over 1 year ago - 3 comments

#49 - Convert IRangesOverview.Rnw to IRangesOverview.Rmd

Pull Request - State: open - Opened by sonali8434 over 1 year ago - 2 comments

#48 - Support 'compress=NA' in AtomicList constructors

Issue - State: open - Opened by hpages almost 2 years ago

#47 - Fix for slidingIRanges function

Issue - State: open - Opened by AxelRosendahlHuber about 2 years ago

#46 - Missing overlaps with type='start' or type='end' in findOverlaps

Issue - State: closed - Opened by jakob-wirbel over 2 years ago - 2 comments

#45 - Unfortunately indecipherable C error on install

Issue - State: closed - Opened by mollysrour over 2 years ago - 1 comment

#44 - Subsetting a SimpleRleList object by a GRanges object 'x' should work, even when 'sum(width(x))' >= 2^31

Issue - State: open - Opened by hpages about 3 years ago - 1 comment

#43 - Some methods expect no more than 2^31 elements

Issue - State: closed - Opened by ssayols about 3 years ago - 7 comments

#42 - Accidental issue

Issue - State: closed - Opened by alexandra-wall over 3 years ago - 1 comment

#41 - Consistency between between base Math Ops and S4Vectors for IntegerLists

Issue - State: closed - Opened by sa-lee over 3 years ago - 4 comments

#40 - Recent change to unsplit() method for List objects breaks many packages

Issue - State: closed - Opened by hpages almost 4 years ago - 4 comments

#39 - Update unsplit() to properly handle named List

Pull Request - State: closed - Opened by sanchit-saini almost 4 years ago

#38 - IRanges constructor with FactorLists

Issue - State: closed - Opened by sa-lee almost 4 years ago - 3 comments

#37 - `IRanges()` in devel doesn't work if `start` is a matrix

Issue - State: closed - Opened by PeteHaitch almost 4 years ago - 3 comments

#36 - Constructing a CompressedList given the PartitioningByEnd object?

Issue - State: closed - Opened by LTLA almost 4 years ago - 3 comments

#35 - mergeByOverlaps, findOverlapPairs etc don't work with only one range

Issue - State: closed - Opened by multimeric almost 4 years ago - 1 comment

#34 - no function found corresponding to methods exports from ‘IRanges’ for: ‘parallel_slot_names’

Issue - State: closed - Opened by TrumanZYX about 4 years ago - 5 comments

#33 - quantile,AtomicList-method misbehaves for length(p)==1

Issue - State: closed - Opened by LTLA about 4 years ago - 2 comments

#32 - Cannot install IRanges with BiocManager::install("IRanges")

Issue - State: closed - Opened by raphaelbetschart about 4 years ago - 2 comments

#31 - Use commonColnames to get/set the column names of a DataFrameList.

Pull Request - State: closed - Opened by LTLA about 4 years ago - 1 comment

#30 - which.min() and which.max() are broken on CompressedNumericList objects

Issue - State: closed - Opened by hpages about 4 years ago

#29 - Safely getting the column names of a CompressedSplitDFrameList

Issue - State: closed - Opened by LTLA about 4 years ago - 2 comments

#28 - Missing the "CompressedList,missing" method for Ops

Issue - State: closed - Opened by LTLA about 4 years ago - 1 comment

#27 - Improving the CompressedList constructors

Issue - State: closed - Opened by LTLA about 4 years ago - 4 comments

#26 - startsWith and endsWith are not exported

Issue - State: closed - Opened by LTLA about 4 years ago - 2 comments

#25 - unname does not work for SplitDFLists

Issue - State: closed - Opened by LTLA about 4 years ago - 1 comment

#24 - Best way of coercing a CompressedSplitDFrameList into a 1:1 mapping?

Issue - State: closed - Opened by LTLA over 4 years ago - 1 comment

#23 - Bug in IRanges:::recycleListElements()

Issue - State: closed - Opened by hpages almost 5 years ago - 2 comments

#22 - function restrict() doesn't return expected result on continuous Iranges

Issue - State: closed - Opened by zyllifeworld about 5 years ago - 2 comments

#21 - order(x, decreasing=TRUE) is broken on CompressedIntegerList objects

Issue - State: open - Opened by hpages over 5 years ago

#20 - ALTREP patch

Pull Request - State: open - Opened by Jiefei-Wang over 5 years ago

#19 - Solve altrep problem

Pull Request - State: closed - Opened by Jiefei-Wang over 5 years ago

#18 - Make the IRanges() constructor compatible with ALTREP

Issue - State: open - Opened by hpages over 5 years ago - 4 comments

#17 - Allow digit grouping in coercion from character

Pull Request - State: open - Opened by balwierz over 5 years ago

#16 - Add rescale() for IRanges objects

Issue - State: open - Opened by hpages over 5 years ago - 2 comments

#15 - Proposal and implementation of fixed-width ranges

Pull Request - State: closed - Opened by PeteHaitch almost 6 years ago - 10 comments

#14 - setdiff that doesn't reduce

Issue - State: closed - Opened by rcorty almost 6 years ago - 8 comments

#13 - Propagate mcols NormalIRanges

Pull Request - State: closed - Opened by rcorty almost 6 years ago - 9 comments

#12 - propagate mcols() through setOps where possible

Issue - State: open - Opened by rcorty almost 6 years ago - 6 comments

#11 - Making the CompressedList more widely usable

Issue - State: open - Opened by LTLA almost 6 years ago - 4 comments

#10 - Wrong min/max on empty entries of CompressedIntegerLists

Issue - State: closed - Opened by LTLA almost 6 years ago - 3 comments

#9 - version bump required

Issue - State: closed - Opened by FelixErnst almost 6 years ago - 1 comment

#8 - Conversion of IRanges to data.frame strips metadata

Issue - State: closed - Opened by iimog almost 6 years ago - 3 comments

#7 - fixed removed rownames upon replacing in a SplitDataFrameList

Pull Request - State: closed - Opened by FelixErnst about 6 years ago - 8 comments

#6 - "[["/setListElement removes rownames on a CompressedSplitDataFrameList

Issue - State: closed - Opened by FelixErnst about 6 years ago - 3 comments

#5 - IRanges::IntegerList & min / max

Issue - State: open - Opened by LiNk-NY over 6 years ago - 6 comments

#4 - Fix typo in intra-range-methods.Rd

Pull Request - State: closed - Opened by PeteHaitch almost 7 years ago - 1 comment

#3 - tile() and slidingWindows() now preserve names

Pull Request - State: closed - Opened by PeteHaitch almost 7 years ago - 4 comments

#2 - Run Length Encoding vignette section is out of place

Issue - State: closed - Opened by lwaldron about 7 years ago - 2 comments

#1 - Change to default minoverlap in subsetByOverlaps() feels unintuitive

Issue - State: closed - Opened by PeteHaitch over 7 years ago - 15 comments

GitHub / Bioconductor/IRanges issues and pull requests