Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / Bioconductor/GoogleGenomics issues and pull requests

#57 - Fix vignette per updates to underlying data.

Pull Request - State: closed - Opened by deflaux about 7 years ago

#56 - gRPC support and more authentication options

Pull Request - State: closed - Opened by siddharthab over 7 years ago - 10 comments

#55 - added code to getVariantCalls to cope with "no variants" in requested region

Pull Request - State: closed - Opened by vjcitn almost 8 years ago - 3 comments

#54 - Variantcalls

Pull Request - State: closed - Opened by shwetagopaul92 almost 8 years ago - 5 comments

#53 - Variantcalls

Pull Request - State: closed - Opened by shwetagopaul92 almost 8 years ago - 1 comment

#52 - variantsToVRanges loses sample/call information

Issue - State: closed - Opened by vjcitn almost 8 years ago - 4 comments

#51 - Switch to native Travis (container-based) support for R.

Pull Request - State: closed - Opened by siddharthab over 8 years ago - 12 comments

#50 - Update to v1.

Pull Request - State: closed - Opened by deflaux over 8 years ago - 3 comments

#49 - Add a method to reset the OAuth token.

Issue - State: open - Opened by deflaux almost 9 years ago - 7 comments

#48 - Update getVariants* calls to accept a variantSetId instead of datasetId

Issue - State: closed - Opened by mbookman about 9 years ago - 1 comment

#45 - Version bump.

Pull Request - State: closed - Opened by deflaux over 9 years ago

#44 - Split the variant annotation vignette in two.

Pull Request - State: closed - Opened by deflaux over 9 years ago

#43 - Version bump.

Pull Request - State: closed - Opened by deflaux over 9 years ago

#42 - Ensure that any errors cause the Vignette build to fail.

Pull Request - State: closed - Opened by deflaux over 9 years ago

#41 - Add content about the API to the beginning of each vignette.

Pull Request - State: closed - Opened by deflaux over 9 years ago - 16 comments

#40 - Might want to update to the new location...

Issue - State: closed - Opened by pgrosu over 9 years ago - 2 comments

#39 - Native Travis support for R.

Pull Request - State: closed - Opened by siddharthab over 9 years ago - 1 comment

#38 - Port to native R support in Travis.

Issue - State: closed - Opened by siddharthab over 9 years ago - 19 comments

#37 - new function getAnyPage to make Google genomics API call.

Pull Request - State: closed - Opened by vmorozov over 9 years ago - 9 comments

#36 - Update links.

Pull Request - State: closed - Opened by deflaux over 9 years ago - 3 comments

#35 - Document steps for new package releases

Issue - State: open - Opened by deflaux over 9 years ago - 4 comments

#34 - Remove skeleton for variantsToVCF

Pull Request - State: closed - Opened by siddharthab over 9 years ago - 6 comments

#33 - With feedback from jimhester's lintr.

Pull Request - State: closed - Opened by siddharthab over 9 years ago - 4 comments

#32 - Error [...] key 60 (char '<') not in lookup table

Issue - State: closed - Opened by danielemerico over 9 years ago - 4 comments

#31 - Bioc submission prep -- stage 2

Pull Request - State: closed - Opened by siddharthab over 9 years ago - 24 comments

#30 - Bioc submission prep -- stage 1

Pull Request - State: closed - Opened by siddharthab almost 10 years ago - 3 comments

#29 - Problem authenticating with invokeBrowser=F

Issue - State: closed - Opened by jbelsky almost 10 years ago - 2 comments

#28 - submit this package to BioConductor

Issue - State: closed - Opened by deflaux almost 10 years ago - 3 comments

#27 - streamline authorization

Issue - State: closed - Opened by deflaux almost 10 years ago - 1 comment
Labels: enhancement

#26 - Fix to improve messaging and instructions around authentication.

Pull Request - State: closed - Opened by deflaux about 10 years ago - 18 comments

#25 - add retrying to all api methods

Issue - State: open - Opened by cassiedoll about 10 years ago

#24 - Update code to v1beta2

Pull Request - State: closed - Opened by cassiedoll about 10 years ago - 12 comments

#23 - Upgrade shiny example to v1beta2

Pull Request - State: closed - Opened by cassiedoll about 10 years ago - 2 comments

#22 - Improve messaging and instructions around authentication.

Issue - State: closed - Opened by deflaux about 10 years ago - 4 comments
Labels: enhancement

#21 - Example code motivating seqlevelsStyle() patch

Issue - State: open - Opened by ttriche about 10 years ago - 1 comment

#20 - getting started confusion

Issue - State: closed - Opened by cassiedoll about 10 years ago - 13 comments

#19 - Restructured genomic coordinate conversion handling for variants.

Pull Request - State: closed - Opened by deflaux about 10 years ago - 10 comments

#18 - coding style

Issue - State: open - Opened by deflaux about 10 years ago - 19 comments
Labels: enhancement

#17 - improve performance

Issue - State: closed - Opened by deflaux about 10 years ago - 8 comments
Labels: enhancement

#16 - Refactor of reads methods.

Pull Request - State: closed - Opened by deflaux about 10 years ago - 5 comments

#15 - use seqlevelsStyle() to normalize seqnames for readsets, variants, etc.

Pull Request - State: closed - Opened by ttriche about 10 years ago - 2 comments

#14 - seqlevelsStyle oddities

Issue - State: closed - Opened by ttriche about 10 years ago - 10 comments

#13 - genome reference assembly extraction from variants/reads objects?

Issue - State: open - Opened by ttriche about 10 years ago - 4 comments

#12 - hosted shiny client seems to be dead

Issue - State: closed - Opened by ttriche about 10 years ago - 11 comments

#11 - An initial vignette for Variant Annotation.

Pull Request - State: closed - Opened by deflaux about 10 years ago - 6 comments

#10 - A few things I experienced

Issue - State: closed - Opened by pgrosu about 10 years ago - 1 comment

#9 - add a vignette for variant annotation with BioConductor

Issue - State: closed - Opened by deflaux about 10 years ago - 3 comments

#8 - API key auth and integration tests

Pull Request - State: closed - Opened by siddharthab about 10 years ago - 9 comments

#7 - Structure demo code into an R package.

Pull Request - State: closed - Opened by siddharthab about 10 years ago - 12 comments

#6 - Work around httr issue where content method was not found.

Pull Request - State: closed - Opened by deflaux about 10 years ago - 4 comments

#5 - Variants fix

Pull Request - State: closed - Opened by deflaux about 10 years ago - 3 comments

#4 - Update README.rst R "library" -> "package"

Pull Request - State: closed - Opened by gavinsimpson over 10 years ago - 5 comments

#3 - Portability fixes for Linux and headless sessions

Pull Request - State: closed - Opened by siddharthab over 10 years ago - 4 comments

#2 - Update genomics-api.R

Pull Request - State: closed - Opened by mtmorgan over 10 years ago - 7 comments

#1 - Add tests and setup travis

Issue - State: closed - Opened by cassiedoll over 10 years ago - 1 comment