Bioconductor/ExperimentHub issues and pull requests

#43 - resources failed to download when building package

Issue - State: closed - Opened by whtns 6 months ago - 2 comments

#42 - No connection check if localHub=True

Pull Request - State: closed - Opened by votti 7 months ago - 3 comments

#41 - Connection attempt while 'localHub=TRUE' leads to lengthy timeout on offline systems

Issue - State: closed - Opened by votti 7 months ago - 2 comments

#40 - ExperimentHub function error

Issue - State: closed - Opened by DongqiangZeng0808 8 months ago - 2 comments

#40 - ExperimentHub function error

Issue - State: closed - Opened by DongqiangZeng0808 8 months ago - 2 comments

#39 - Defer internet access to accessor functions created by createHubAccessors()

Pull Request - State: closed - Opened by hpages 10 months ago - 2 comments

#38 - Race conditions resulting in "Corrupt Cache: sqlite file"

Issue - State: open - Opened by HenrikBengtsson 10 months ago

#37 - Update to ask to install or fail gracefully if not interactive

Pull Request - State: closed - Opened by lshep 11 months ago - 2 comments

#36 - Cannot connect to ExperimentHub server

Issue - State: closed - Opened by Sdsxdszqb about 1 year ago - 1 comment

#35 - ExperimentHub() error ! Failed to collect lazy table.

Issue - State: closed - Opened by dvera over 1 year ago - 1 comment

#34 - resources failed to download

Issue - State: open - Opened by kazaguls over 1 year ago - 3 comments

#33 - http 409

Issue - State: closed - Opened by yyang-SDI over 1 year ago - 11 comments

#32 - A resource should not been made available until it's fully downloaded

Issue - State: open - Opened by hpages over 1 year ago - 2 comments

#31 - partial connectivity through authenticated proxy

Issue - State: closed - Opened by delocalizer over 1 year ago - 8 comments

#30 - devel branch error ... GenomicAlignments issue?

Issue - State: closed - Opened by vjcitn over 1 year ago - 5 comments

#29 - Updates to the package to remove check warnings and notes

Pull Request - State: closed - Opened by LiNk-NY almost 2 years ago

#28 - add section in vignette with BiocHubsShiny

Pull Request - State: closed - Opened by LiNk-NY almost 2 years ago - 1 comment

#27 - downloading data onto a HPC that is locked off from the internet

Issue - State: open - Opened by chrisclarkson about 2 years ago - 1 comment

#26 - Error in ExperimentHub::ExperimentHub

Issue - State: closed - Opened by LDHHAHA almost 3 years ago - 1 comment

#25 - helper function to prioritize link over EH resource location

Issue - State: closed - Opened by LiNk-NY almost 3 years ago - 2 comments
Labels: question

#24 - Update ExperimentHub.Rmd

Pull Request - State: closed - Opened by mikelove almost 3 years ago

#23 - Error: failed to connect to local data base

Issue - State: closed - Opened by komalsrathi about 3 years ago - 1 comment

#22 - snapshotDate(): 2021-08-27

Issue - State: closed - Opened by GuidoBarzaghi over 3 years ago

#21 - Error when using ExperimentHub() function

Issue - State: closed - Opened by ChrisShore over 3 years ago - 1 comment

#20 - helper function for easily removing a resource by ID

Issue - State: closed - Opened by LiNk-NY over 3 years ago - 5 comments
Labels: enhancement

#19 - update preparerclass documentation

Pull Request - State: closed - Opened by mtmorgan over 3 years ago

#18 - Fix typo in vignette

Pull Request - State: closed - Opened by milanmlft over 3 years ago

#17 - Fixed a couple of typos and formatting issues in the vignette.

Pull Request - State: closed - Opened by federicomarini almost 4 years ago

#16 - Documentation for `...` in ExperimentHub constructor missing?

Issue - State: closed - Opened by LiNk-NY about 4 years ago - 2 comments
Labels: question

#15 - Using R 4.0.3 seem to have issue in extracting FaFile

Issue - State: closed - Opened by cying111 over 4 years ago - 1 comment

#14 - Failed to connect to bioconductor.org port 80

Issue - State: closed - Opened by aciolfi over 4 years ago - 18 comments

#13 - Improvements to the ExperimentHub constructor

Pull Request - State: closed - Opened by LTLA almost 5 years ago

#12 - Misleading error message upon lack of connectivity

Issue - State: closed - Opened by LTLA almost 5 years ago - 1 comment

#11 - old snapshot

Issue - State: closed - Opened by ghost almost 5 years ago - 2 comments

#10 - ExperimentHub() timeout error

Issue - State: closed - Opened by xingrenUB almost 5 years ago - 4 comments

#9 - failed to connect / reason: Scanner error: mapping values are not allowed in this context at line 4, column 22

Issue - State: closed - Opened by nebetbastet about 5 years ago - 4 comments

#8 - Sync localHub documentation with code

Pull Request - State: closed - Opened by PeteHaitch about 5 years ago - 1 comment

#7 - Minor doc fixes for option getting.

Pull Request - State: closed - Opened by LTLA over 5 years ago - 2 comments

#6 - localHub=TRUE not sufficient for offline use

Issue - State: closed - Opened by vjcitn over 5 years ago - 27 comments

#5 - put head() around unique(eh$dataprovider)

Pull Request - State: closed - Opened by lwaldron about 6 years ago

#4 - Update CreateAnExperimentHubPackage.Rmd

Pull Request - State: closed - Opened by kjohnsen over 6 years ago - 1 comment

GitHub / Bioconductor/ExperimentHub issues and pull requests