Bioconductor/BuildABiocWorkshop issues and pull requests

#43 - Fix warning message

Pull Request - State: open - Opened by kevinrue 5 months ago

#42 - Fix typo

Pull Request - State: closed - Opened by kevinrue 5 months ago

#41 - loading data inside the workshop package

Issue - State: closed - Opened by drighelli about 1 year ago - 1 comment

#40 - Use binary installations

Pull Request - State: closed - Opened by LiNk-NY over 1 year ago - 1 comment

#39 - Warnings about various deprecated actions

Issue - State: closed - Opened by amcdavid over 1 year ago - 1 comment

#38 - Deploy error

Issue - State: closed - Opened by EricSDavis over 1 year ago - 1 comment

#37 - Orchestra platform/BuildABiocWorkshop website throwing 404s

Issue - State: closed - Opened by j-andrews7 over 1 year ago - 1 comment

#36 - rename branch from master to devel

Issue - State: closed - Opened by LiNk-NY over 1 year ago - 8 comments

#35 - Need to troubleshoot cosign failures reported by others

Issue - State: closed - Opened by seandavi about 2 years ago - 1 comment

#34 - Use binary repositories for CRAN package installation

Issue - State: closed - Opened by mtmorgan over 2 years ago

#33 - An error from `sysreqs` is causing the GitHub Actions workflow in this template to fail

Issue - State: closed - Opened by ChristopherEeles over 2 years ago - 1 comment

#32 - Update basic_checks.yaml

Pull Request - State: closed - Opened by seandavi over 2 years ago

#31 - Deployment workflow out of date

Issue - State: closed - Opened by ahl27 over 2 years ago - 2 comments

#30 - Update basic_checks.yaml

Pull Request - State: closed - Opened by seandavi almost 3 years ago

#29 - Create docker-publish.yml

Pull Request - State: closed - Opened by seandavi almost 3 years ago

#28 - Update basic_checks.yaml

Pull Request - State: closed - Opened by seandavi almost 3 years ago

#25 - Replace https to http

Pull Request - State: closed - Opened by kozo2 about 3 years ago

#24 - Add GITHUB_PAT env

Pull Request - State: closed - Opened by kozo2 about 3 years ago - 1 comment

#23 - Use as a template, but do not fork.

Pull Request - State: closed - Opened by kevinrue over 3 years ago

#22 - How to format DOCKER_USERNAME in secrets?

Issue - State: closed - Opened by jdrnevich over 3 years ago - 1 comment

#21 - Move docker deploy to end of workflow

Issue - State: closed - Opened by seandavi almost 4 years ago
Labels: enhancement

#20 - Allow manual cache busting

Issue - State: closed - Opened by seandavi almost 4 years ago - 1 comment
Labels: enhancement

#19 - Update HOWTO_BUILD_WORKSHOP.Rmd

Pull Request - State: closed - Opened by aedin over 4 years ago - 2 comments

#18 - Update README.md

Pull Request - State: closed - Opened by aedin over 4 years ago - 1 comment

#17 - Update Dockerfile -Install libglpk

Pull Request - State: closed - Opened by aedin over 4 years ago - 1 comment

#16 - docker run -e PASSWORD=<pwd>... exposes <pwd> to other users on the same machine

Issue - State: closed - Opened by HenrikBengtsson over 4 years ago

#15 - ERROR in docker build-push-action action step

Issue - State: closed - Opened by drighelli over 4 years ago - 4 comments

#14 - Error in Install System Dependencies actions step

Issue - State: closed - Opened by drighelli over 4 years ago - 1 comment

#13 - install only from BiocManager, update vignette

Pull Request - State: open - Opened by lwaldron over 4 years ago - 5 comments

#12 - use cran.r-project.org mirror

Pull Request - State: closed - Opened by lwaldron over 4 years ago - 1 comment

#11 - Use CRAN mirror to install deps

Pull Request - State: closed - Opened by lwaldron over 4 years ago - 1 comment

#10 - Check docker credentials and package dependencies at the beginning of the basic_checks.yaml Action

Issue - State: closed - Opened by cmirzayi over 4 years ago - 2 comments
Labels: enhancement, help wanted

#9 - getting pkgdown to work; problem for pre-existing github.io?

Issue - State: closed - Opened by vjcitn over 4 years ago - 3 comments

#8 - Revert "Revert "use GITHUB_TOKEN; update vignette""

Pull Request - State: closed - Opened by seandavi over 4 years ago - 2 comments

#7 - Revert "use GITHUB_TOKEN; update vignette"

Pull Request - State: closed - Opened by seandavi over 4 years ago - 1 comment

#6 - Provide additional fields in DESCRIPTION to capture metadata for FAIR sharing

Issue - State: open - Opened by mtmorgan over 4 years ago

#5 - Add a CONTRIBUTING.md file to make repos contribution-friendly

Issue - State: open - Opened by mtmorgan over 4 years ago

#4 - use GITHUB_TOKEN; update vignette

Pull Request - State: closed - Opened by LiNk-NY over 4 years ago - 1 comment

#3 - missing .nojekyll

Issue - State: closed - Opened by LiNk-NY over 4 years ago - 1 comment

#2 - Vignette building killed

Issue - State: closed - Opened by koenvandenberge over 4 years ago - 2 comments

#1 - Message from docker/build-push-action

Issue - State: open - Opened by jmacdon over 4 years ago - 2 comments

GitHub / Bioconductor/BuildABiocWorkshop issues and pull requests