Bioconductor/BiocWorkshops issues and pull requests

#67 - Lazy representation of very large genomic resources in R/Bioconductor

Issue - State: closed - Opened by Liubuntu over 5 years ago - 1 comment

#66 - Cloud-scale genomic data science with Bioconductor

Issue - State: open - Opened by vjcitn over 5 years ago

#65 - Workflow for Multi-omics Analysis with MultiAssayExperiment and curatedTCGAData

Issue - State: open - Opened by lwaldron over 5 years ago
Labels: not started

#64 - iSEE workshop proposal

Pull Request - State: closed - Opened by kevinrue almost 6 years ago - 2 comments

#63 - Please add me as a contributor

Issue - State: closed - Opened by kevinrue almost 6 years ago - 1 comment

#62 - Hyperlink DOIs against preferred resolver

Pull Request - State: closed - Opened by katrinleinweber about 6 years ago

#61 - Small manuscript describing process of developing workshop materials and book

Issue - State: closed - Opened by seandavi about 6 years ago

#60 - Text runs off page in pdf

Issue - State: open - Opened by seandavi about 6 years ago - 1 comment
Labels: problems

#59 - Figures too large in pdf

Issue - State: closed - Opened by seandavi about 6 years ago - 1 comment

#58 - `isa` package is no longer available

Issue - State: closed - Opened by seandavi over 6 years ago - 1 comment

#57 - Move to docker for portability--for next iteration

Issue - State: open - Opened by seandavi over 6 years ago
Labels: Infrastructure

#56 - Update process

Issue - State: open - Opened by seandavi over 6 years ago - 3 comments
Labels: question, Infrastructure

#55 - Anyone averse to adding a zenodo DOI for the repository?

Issue - State: open - Opened by seandavi over 6 years ago
Labels: question, Infrastructure

#54 - In future, consider using git submodules for chapters

Issue - State: open - Opened by seandavi over 6 years ago
Labels: Infrastructure

#53 - error in epub version

Issue - State: closed - Opened by lwaldron over 6 years ago - 4 comments
Labels: problems

#52 - text and figures run off page in PDF version

Issue - State: closed - Opened by lwaldron over 6 years ago - 3 comments
Labels: problems

#51 - Using a single chapter?

Issue - State: open - Opened by mtmorgan over 6 years ago - 1 comment

#50 - Instructions for using the materials

Issue - State: open - Opened by lwaldron over 6 years ago - 2 comments
Labels: incomplete

#49 - Licensing of all material

Issue - State: closed - Opened by seandavi over 6 years ago - 7 comments

#48 - Publish book on bookdown.org?

Issue - State: closed - Opened by sa-lee over 6 years ago - 5 comments

#47 - RCy3 connection issues from amazon instance

Issue - State: closed - Opened by risserlin over 6 years ago - 12 comments

#46 - adding missing citations (closes #22) and minor formatting

Pull Request - State: closed - Opened by diyadas over 6 years ago - 2 comments

#45 - Bookdown PDF

Issue - State: closed - Opened by lwaldron over 6 years ago - 6 comments
Labels: looks OK

#44 - Add Google Analytics tracking

Issue - State: closed - Opened by seandavi over 6 years ago - 1 comment
Labels: Infrastructure

#43 - Per-chapter references?

Issue - State: open - Opened by seandavi over 6 years ago - 4 comments
Labels: Infrastructure

#42 - PDF of 500_Effectively_Using_the_DelayedArray_Framework.Rmd

Issue - State: closed - Opened by seandavi over 6 years ago
Labels: problems

#41 - Parallel builds--idea for next year

Issue - State: open - Opened by seandavi over 6 years ago - 1 comment
Labels: Infrastructure

#40 - 100_Morgan_RBiocForAll

Issue - State: closed - Opened by mtmorgan over 6 years ago
Labels: looks OK

#39 - Citations not displayed properly

Issue - State: closed - Opened by sa-lee over 6 years ago - 4 comments
Labels: question

#38 - Please add me as a contributor

Issue - State: closed - Opened by jmacdon over 6 years ago - 1 comment

#37 - Please add me as a collaborator

Issue - State: closed - Opened by diyadas over 6 years ago - 1 comment

#36 - Waldron_PublicData.Rmd

Issue - State: closed - Opened by lwaldron over 6 years ago - 15 comments
Labels: looks OK

#35 - Turaga_MaintainBioc.Rmd

Issue - State: closed - Opened by lwaldron over 6 years ago
Labels: looks OK

#34 - Safikhani_Pharmacogenomics.Rmd

Issue - State: closed - Opened by lwaldron over 6 years ago - 12 comments
Labels: looks OK

#33 - Ramos_MultiAssayExperiment.Rmd

Issue - State: closed - Opened by lwaldron over 6 years ago - 6 comments
Labels: looks OK

#32 - MacDonald_Annotation.Rmd

Issue - State: closed - Opened by lwaldron over 6 years ago - 11 comments
Labels: looks OK

#31 - Lee_Plyranges.Rmd

Issue - State: closed - Opened by lwaldron over 6 years ago - 9 comments
Labels: looks OK

#30 - Lawrence_GenomicRanges.Rmd

Issue - State: closed - Opened by lwaldron over 6 years ago - 8 comments
Labels: looks OK

#29 - Law_RNAseq123.Rmd

Issue - State: closed - Opened by lwaldron over 6 years ago - 4 comments
Labels: looks OK

#28 - 230_Isserlin_RCy3_intro.Rmd

Issue - State: closed - Opened by lwaldron over 6 years ago - 7 comments
Labels: looks OK

#27 - Geistlinger_Omics.Rmd

Issue - State: closed - Opened by lwaldron over 6 years ago
Labels: looks OK

#26 - Cooley_DECIPHER.Rmd

Issue - State: closed - Opened by lwaldron over 6 years ago - 23 comments
Labels: looks OK

#25 - Coetzee_StatePaintR.Rmd

Issue - State: closed - Opened by lwaldron over 6 years ago - 3 comments
Labels: not started

#24 - 500_Effectively_Using_the_DelayedArray_Framework.Rmd

Issue - State: closed - Opened by lwaldron over 6 years ago - 10 comments
Labels: looks OK

#23 - 230_Isserlin_RCy3_intro.Rmd

Issue - State: closed - Opened by lwaldron over 6 years ago - 1 comment
Labels: duplicate

#22 - 220_Das_SingleCellRNASeq.Rmd

Issue - State: closed - Opened by lwaldron over 6 years ago - 20 comments
Labels: looks OK

#21 - 201_Love_DESeq2.Rmd

Issue - State: closed - Opened by lwaldron over 6 years ago - 2 comments
Labels: looks OK

#20 - Using package hosted on github for helper code

Issue - State: closed - Opened by p-smirnov over 6 years ago - 2 comments
Labels: duplicate

#19 - Incomplete or Erroring Workshops

Issue - State: closed - Opened by LiNk-NY over 6 years ago - 5 comments

#18 - Please add me as a collaborator

Issue - State: closed - Opened by kstreet13 over 6 years ago - 1 comment

#17 - Please add me as a collaborator

Issue - State: closed - Opened by Simon-Coetzee over 6 years ago - 1 comment

#16 - Including data from a non-Bioc package

Issue - State: closed - Opened by lawremi over 6 years ago - 6 comments
Labels: question

#15 - Please add me as a collaborator.

Issue - State: closed - Opened by zhaleh-safikhani over 6 years ago - 1 comment

#14 - Added as collaborator for workshop

Issue - State: closed - Opened by npcooley over 6 years ago - 1 comment

#13 - Including non-package example data

Issue - State: closed - Opened by PeteHaitch over 6 years ago - 2 comments
Labels: question

#12 - Use of png images

Issue - State: closed - Opened by drisso over 6 years ago - 6 comments
Labels: question

#11 - Please add me as a collaborator

Issue - State: closed - Opened by risserlin over 6 years ago - 1 comment

#10 - Please add me as collaborator

Issue - State: closed - Opened by drisso over 6 years ago - 1 comment

#9 - Initial population of MultiAssayExperiment workshop

Pull Request - State: closed - Opened by lwaldron over 6 years ago

#8 - Citations

Issue - State: open - Opened by mikelove over 6 years ago - 2 comments
Labels: question

#7 - Please add me as collaborator

Issue - State: closed - Opened by mikelove over 6 years ago - 1 comment

#6 - please add me as a collaborator

Issue - State: closed - Opened by lwaldron over 6 years ago - 1 comment

#5 - Where and how to classify workshops within the respective RMD file?

Issue - State: closed - Opened by lgeistlinger over 6 years ago - 3 comments
Labels: question

#4 - New collaborator for workshop: functional enrichment analysis (Geistlinger)

Issue - State: closed - Opened by lgeistlinger over 6 years ago - 1 comment

#3 - Please add me as a collaborator

Issue - State: closed - Opened by sa-lee over 6 years ago

#2 - Please add me as a collaborator

Issue - State: closed - Opened by PeteHaitch over 6 years ago

#1 - Continuous Integration

Issue - State: closed - Opened by mtmorgan over 6 years ago - 9 comments

GitHub / Bioconductor/BiocWorkshops issues and pull requests