Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / Bioconductor/BSgenome issues and pull requests
#78 - About 'a registered NCBI assembly or UCSC genome'
Issue -
State: closed - Opened by SYSUMSD 6 months ago
- 5 comments
#76 - seqlengths issue again
Issue -
State: closed - Opened by stevenjblair 6 months ago
- 1 comment
#75 - Please help adding Xenopus tropicalis to GenomeInfoDb package
Issue -
State: closed - Opened by clarkzor 8 months ago
- 2 comments
#74 - Can't find genome in NCBI and UCSC
Issue -
State: closed - Opened by jang1563 8 months ago
- 7 comments
#73 - Issue with forgeBSgenomeDataPkg()
Issue -
State: closed - Opened by yangshichen0713 11 months ago
- 11 comments
#72 - Add rworkflows
Pull Request -
State: closed - Opened by bschilder about 1 year ago
#71 - Support for canFam4
Pull Request -
State: open - Opened by isilta about 1 year ago
- 1 comment
#70 - forgeBSgenomeDataPkg erro in Getting chrom info
Issue -
State: closed - Opened by ld9866 over 1 year ago
- 4 comments
#69 - Issue with forgeBSgenomeDataPkg()
Issue -
State: closed - Opened by criveralopez over 1 year ago
- 8 comments
#68 - Error Forging BSGenome
Issue -
State: closed - Opened by woodjosh7 over 1 year ago
- 2 comments
#67 - Overriding getSeqlengths
Issue -
State: closed - Opened by stevenjblair over 1 year ago
- 11 comments
#66 - Error reported when creating Masked BSgenome
Issue -
State: closed - Opened by Song-10-YF over 1 year ago
- 6 comments
#65 - snpsBySeqname and snpsByOverlaps does not work.
Issue -
State: closed - Opened by YingkaiSun over 1 year ago
- 14 comments
#64 - BSgenome packge for proprietary genome
Issue -
State: closed - Opened by Jka-ant over 1 year ago
- 1 comment
#63 - Forge BSgenome data package for NCBI assembly bStrHab1.2.pri
Issue -
State: closed - Opened by kakopo over 1 year ago
- 2 comments
#62 - forgeBSgenomeDataPkg: not a registered NCBI assembly or UCSC genome error
Issue -
State: closed - Opened by keroguynes over 1 year ago
- 3 comments
#61 - Conflict with rtracklayer
Issue -
State: closed - Opened by AlohaPropolis over 1 year ago
- 2 comments
#60 - `BSgenome` to failing on Bioc release and devel
Issue -
State: closed - Opened by bschilder over 1 year ago
- 2 comments
#59 - Use unpublished in-house genome fasta for creating a BSgenome object
Issue -
State: closed - Opened by alslonik over 1 year ago
- 4 comments
#58 - add new version of genome
Issue -
State: closed - Opened by AndressaOL almost 2 years ago
- 2 comments
#57 - snpsById call does not complete for dbSNP155
Issue -
State: closed - Opened by MattBrauer almost 2 years ago
- 8 comments
#56 - Error Forging BSgenome Package
Issue -
State: closed - Opened by sopeadeniji almost 2 years ago
- 8 comments
#55 - Error using forgeBSgenomeDataPkg() to forge bacterial species not included registered_NCBI_assemblies() nor registered_UCSC_genomes()
Issue -
State: closed - Opened by Guan06 almost 2 years ago
- 4 comments
#54 - Help
Issue -
State: closed - Opened by zhanglp996 almost 2 years ago
- 4 comments
#53 - Add 'replace' argument to forgeBSgenomeDataPkg()
Pull Request -
State: closed - Opened by Priceless-P almost 2 years ago
- 5 comments
#52 - Forge BSgenome data package for NCBI assembly UCB_Xtro_10.0
Pull Request -
State: closed - Opened by Simplecodez almost 2 years ago
#51 - Forge BSgenome data package for UCSC genome xenTro10
Pull Request -
State: closed - Opened by Simplecodez almost 2 years ago
#50 - Add 'replace' argument to forgeBSgenomeDataPkg()
Issue -
State: closed - Opened by hpages almost 2 years ago
- 17 comments
Labels: enhancement
#49 - Add seed file and fasta_to_sorted_2bit
Pull Request -
State: closed - Opened by Priceless-P almost 2 years ago
- 3 comments
#48 - Forge BSgenome data package for NCBI assembly Felis_catus_9.0
Pull Request -
State: closed - Opened by kakopo almost 2 years ago
- 2 comments
#47 - Forge BSgenome data package for UCSC genome felCat9
Pull Request -
State: closed - Opened by kakopo almost 2 years ago
#46 - Forge BSgenome data package for UCSC genome canFam6
Pull Request -
State: closed - Opened by Priceless-P almost 2 years ago
- 18 comments
#45 - Proposed task for Outreachy applicants: Forge BSgenome data package for NCBI assembly Kamilah_GGO_v0
Issue -
State: open - Opened by hpages almost 2 years ago
Labels: outreachy dec22
#44 - Proposed task for Outreachy applicants: Forge BSgenome data package for UCSC genome gorGor6
Issue -
State: open - Opened by hpages almost 2 years ago
Labels: outreachy dec22
#43 - Proposed task for Outreachy applicants: Forge BSgenome data package for NCBI assembly Felis_catus_9.0
Issue -
State: closed - Opened by hpages almost 2 years ago
- 10 comments
Labels: outreachy dec22
#42 - Proposed task for Outreachy applicants: Forge BSgenome data package for UCSC genome felCat9
Issue -
State: closed - Opened by hpages almost 2 years ago
- 16 comments
Labels: outreachy dec22
#41 - Proposed task for Outreachy applicants: Forge BSgenome data package for NCBI assembly UCB_Xtro_10.0
Issue -
State: closed - Opened by hpages almost 2 years ago
- 19 comments
Labels: outreachy dec22
#40 - Proposed task for Outreachy applicants: Forge BSgenome data package for UCSC genome xenTro10
Issue -
State: closed - Opened by hpages almost 2 years ago
- 5 comments
Labels: outreachy dec22
#39 - Proposed task for Outreachy applicants: Forge BSgenome data package for NCBI assembly Dog10K_Boxer_Tasha
Issue -
State: closed - Opened by hpages almost 2 years ago
- 15 comments
Labels: outreachy dec22
#38 - Proposed task for Outreachy applicants: Forge BSgenome data package for UCSC genome canFam6
Issue -
State: closed - Opened by hpages almost 2 years ago
- 7 comments
Labels: outreachy dec22
#37 - getSeq versus Views runtime
Issue -
State: open - Opened by jayoung almost 2 years ago
- 5 comments
#36 - BSgenome.Rnorvegicus.NCBI.rn6
Issue -
State: closed - Opened by Dalhte about 2 years ago
- 12 comments
#35 - error forgebsgenome
Issue -
State: closed - Opened by balathumma10 about 2 years ago
- 6 comments
#34 - no existing definition for function ‘releaseName’
Issue -
State: closed - Opened by jeroen about 2 years ago
- 14 comments
#33 - Malformed package name
Issue -
State: closed - Opened by m-waqas about 2 years ago
- 4 comments
#32 - Error occured when forge Axolotl genome by BSgenome
Issue -
State: closed - Opened by xiangyupan over 2 years ago
- 2 comments
#31 - Speeding up `BSgenome::snpsById`
Issue -
State: closed - Opened by bschilder over 2 years ago
- 4 comments
#30 - BSgenome package not available
Issue -
State: closed - Opened by prmunn over 2 years ago
- 2 comments
#29 - Unable to forge genome for EquCab
Issue -
State: closed - Opened by prmunn over 2 years ago
- 3 comments
#28 - Is there any way to circumvent the need for 2bit?
Issue -
State: closed - Opened by stevenjblair over 2 years ago
- 5 comments
#27 - Can I forge an unregistered NCBI? (Am I doing this right?)
Issue -
State: closed - Opened by stevenjblair over 2 years ago
#26 - Gallus gallus bGalGal1.mat.broiler.GRCg7b
Issue -
State: closed - Opened by AO-M-Lima over 2 years ago
- 7 comments
#25 - New BSgenome - C3H/HeJ Mus musculus
Issue -
State: closed - Opened by ghost almost 3 years ago
- 3 comments
#24 - checking DESCRIPTION meta-information ... ERROR
Issue -
State: closed - Opened by gevro almost 3 years ago
- 1 comment
#23 - Error: values for symbols PKGVERSION are not single strings
Issue -
State: closed - Opened by gevro almost 3 years ago
- 5 comments
#22 - New CHM13 genome
Issue -
State: closed - Opened by gevro almost 3 years ago
- 4 comments
#21 - [Question] Create new mask without BSgenomeForge?
Issue -
State: closed - Opened by monovich about 3 years ago
- 2 comments
#20 - forge custom BSgenome error: not a registered NCBI assembly or UCSC genome
Issue -
State: closed - Opened by santataRU about 3 years ago
- 15 comments
#19 - New BSgenome - Mycobacterium tuberculosis
Issue -
State: closed - Opened by Ellauyz about 3 years ago
- 9 comments
#18 - Errors creating BSgenome for rn7
Issue -
State: closed - Opened by zrcjessica about 3 years ago
- 6 comments
#17 - inconsistent getSeq and isCircular behavior
Issue -
State: open - Opened by Roleren over 3 years ago
- 2 comments
#16 - Forging BSgenome that is not registered
Issue -
State: closed - Opened by alutservitz over 3 years ago
- 3 comments
#15 - What is the latest version?
Issue -
State: closed - Opened by max1c almost 4 years ago
- 2 comments
#14 - propagate both genome and seqinfo information from 'subject'
Pull Request -
State: closed - Opened by LiNk-NY almost 4 years ago
- 2 comments
#13 - should matchPattern propagate subject genome?
Issue -
State: closed - Opened by vjcitn almost 4 years ago
- 1 comment
#12 - Load a genome - Chlamydomonas reinhardtii v5 genome
Issue -
State: closed - Opened by mullerbsf almost 4 years ago
- 15 comments
#11 - forge BSgenome data package from unpublished genome
Issue -
State: closed - Opened by tamaraprieto about 4 years ago
- 2 comments
#10 - create masked BSgenome with RM only
Issue -
State: closed - Opened by BingbingYuan about 4 years ago
- 7 comments
#9 - Issue with BSgenome installation
Issue -
State: closed - Opened by joseverdezoto over 4 years ago
- 3 comments
#8 - Added userMask+invertUserMask option also to the PWM and PDict matchi…
Pull Request -
State: closed - Opened by fgeier over 4 years ago
- 1 comment
#7 - GRCh37
Issue -
State: closed - Opened by hpoisner over 4 years ago
#6 - Add New Genome!
Issue -
State: closed - Opened by hyBio almost 5 years ago
- 2 comments
#5 - Disagreement between sequences and names for `getSeq,XStringSet`
Issue -
State: closed - Opened by csoneson almost 5 years ago
- 3 comments
#4 - Failed to install
Issue -
State: closed - Opened by bigguscodus almost 5 years ago
- 5 comments
#3 - Feature request: user-level BSgenome() constructor
Issue -
State: open - Opened by hpages over 5 years ago
#2 - Feature request: BSgenomeViews objects accept GPos objects in their 'granges' slot
Issue -
State: open - Opened by hpages over 5 years ago
#1 - Clarify documentation of 'exclude' slot in a BSParams
Issue -
State: closed - Opened by PeteHaitch about 6 years ago
- 1 comment