Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / Bioconductor/BBS issues and pull requests

#430 - Fix notifications

Pull Request - State: closed - Opened by jwokaty 21 days ago

#429 - fix notifications

Issue - State: closed - Opened by jwokaty 29 days ago
Labels: bug, priority-high

#428 - X11 nebbiolo2

Issue - State: closed - Opened by jwokaty 29 days ago - 5 comments

#427 - Issue/426

Pull Request - State: closed - Opened by jwokaty about 1 month ago

#426 - Flags for 3.21

Issue - State: closed - Opened by jwokaty about 2 months ago

#425 - Mac files

Pull Request - State: closed - Opened by jwokaty 3 months ago

#424 - Fix manuals path

Pull Request - State: closed - Opened by jwokaty 3 months ago - 1 comment

#423 - Add check for cross references in manual pages

Pull Request - State: closed - Opened by llrs 3 months ago - 4 comments

#422 - Document MEME suite installation

Pull Request - State: open - Opened by jwokaty 4 months ago

#421 - Install MEME suite for MotifPeeker

Issue - State: open - Opened by jwokaty 4 months ago
Labels: documentation, machine update/configuration

#420 - Add rustc, cargo for CRAN clarabel for Bioc ANCOMBC

Pull Request - State: closed - Opened by jwokaty 4 months ago

#420 - Add rustc, cargo for CRAN clarabel for Bioc ANCOMBC

Pull Request - State: closed - Opened by jwokaty 4 months ago

#419 - Cargo, rustc for clarabel

Issue - State: closed - Opened by jwokaty 4 months ago - 2 comments
Labels: dependency

#418 - Add documentation for creating a Win VM in JS2

Pull Request - State: closed - Opened by jwokaty 5 months ago

#418 - Add documentation for creating a Win VM in JS2

Pull Request - State: closed - Opened by jwokaty 5 months ago

#417 - Remove palomino3, palomino4

Pull Request - State: closed - Opened by jwokaty 5 months ago

#417 - Remove palomino3, palomino4

Pull Request - State: closed - Opened by jwokaty 5 months ago

#416 - Remove palomino4

Pull Request - State: closed - Opened by jwokaty 5 months ago

#416 - Remove palomino4

Pull Request - State: closed - Opened by jwokaty 5 months ago

#415 - Add palomino6

Pull Request - State: closed - Opened by jwokaty 5 months ago

#415 - Add palomino6

Pull Request - State: closed - Opened by jwokaty 5 months ago

#414 - Remove palomino7 from bioc propagation

Pull Request - State: closed - Opened by jwokaty 5 months ago

#414 - Remove palomino7 from bioc propagation

Pull Request - State: closed - Opened by jwokaty 5 months ago

#413 - Update windows doc

Pull Request - State: closed - Opened by jwokaty 5 months ago

#413 - Update windows doc

Pull Request - State: closed - Opened by jwokaty 5 months ago

#412 - Add palomino7

Pull Request - State: closed - Opened by jwokaty 5 months ago - 2 comments

#412 - Add palomino7

Pull Request - State: closed - Opened by jwokaty 5 months ago - 2 comments

#411 - Add kunpeng2 to 3.19 report

Pull Request - State: closed - Opened by jwokaty 5 months ago

#411 - Add kunpeng2 to 3.19 report

Pull Request - State: closed - Opened by jwokaty 5 months ago

#410 - kunpeng2: Use /home/biocbuild/R/R as BBS_R_HOME

Pull Request - State: closed - Opened by martin-g 5 months ago

#410 - kunpeng2: Use /home/biocbuild/R/R as BBS_R_HOME

Pull Request - State: closed - Opened by martin-g 5 months ago

#409 - Fix color of 3.20 reports

Issue - State: closed - Opened by jwokaty 7 months ago - 1 comment

#409 - Fix color of 3.20 reports

Issue - State: closed - Opened by jwokaty 7 months ago - 1 comment

#400 - Share basilisk's cache between the BBS and the SPB on the Linux builders

Issue - State: open - Opened by hpages 10 months ago - 8 comments
Labels: enhancement, machine update/configuration

#386 - Add note to mysql section in mac doc

Pull Request - State: closed - Opened by jwokaty 11 months ago - 1 comment

#188 - Add Rust for Bioc rd4

Pull Request - State: closed - Opened by jwokaty over 2 years ago

#188 - Add Rust for Bioc rd4

Pull Request - State: closed - Opened by jwokaty over 2 years ago

#180 - Install Rust

Issue - State: closed - Opened by jwokaty over 2 years ago - 6 comments

#102 - Add prop hack

Pull Request - State: closed - Opened by jwokaty about 3 years ago

#101 - Update Set up Propagation for 3.15

Pull Request - State: closed - Opened by jwokaty about 3 years ago

#100 - Correct 4.1 to 4.2 in Renviron.bioc

Pull Request - State: closed - Opened by jwokaty about 3 years ago

#99 - 3.15

Pull Request - State: closed - Opened by jwokaty about 3 years ago - 2 comments

#98 - Change 3.14 from master to RELEASE_3_14

Pull Request - State: closed - Opened by jwokaty about 3 years ago - 3 comments

#97 - Adding build to display_propagation_status disable propagation

Pull Request - State: closed - Opened by jwokaty about 3 years ago

#96 - Add locking mechanism to prepareRepos-data-annotation.sh

Issue - State: open - Opened by jwokaty about 3 years ago - 2 comments

#95 - Add CA bundle to mac documentation

Pull Request - State: closed - Opened by jwokaty about 3 years ago - 1 comment

#94 - Make build more robust to encoding problems

Issue - State: closed - Opened by jwokaty about 3 years ago - 1 comment
Labels: enhancement

#93 - Remove Python packages

Issue - State: closed - Opened by jwokaty about 3 years ago - 3 comments

#92 - Add configuration and documentation for 3.14 data annotation packages

Pull Request - State: closed - Opened by jwokaty about 3 years ago - 2 comments

#91 - Remove duplicates in Ubuntu Files

Issue - State: open - Opened by jwokaty about 3 years ago - 1 comment

#90 - Add instructions to install .NET runtime required for rmspc

Pull Request - State: closed - Opened by jwokaty over 3 years ago

#89 - Copy git-log into the report directory

Pull Request - State: closed - Opened by jwokaty over 3 years ago - 18 comments

#88 - Note packages in Bioconductor Docker

Pull Request - State: closed - Opened by jwokaty over 3 years ago

#87 - Add instructions to install .NET runtime in Ubuntu

Pull Request - State: closed - Opened by jwokaty over 3 years ago - 1 comment

#86 - Remove references to cwltool and Rcwl dependencies

Pull Request - State: closed - Opened by jwokaty over 3 years ago - 1 comment

#85 - Remove cwltool dependency for Rcwl

Pull Request - State: closed - Opened by jwokaty over 3 years ago - 1 comment

#84 - Move apt and pip dependencies to Ubuntu-files

Pull Request - State: closed - Opened by jwokaty over 3 years ago - 2 comments

#83 - Create Ubuntu-files

Issue - State: closed - Opened by jwokaty over 3 years ago

#82 - Add libmono-system-data4.0-cil to apt dependencies

Pull Request - State: closed - Opened by jwokaty over 3 years ago

#81 - Add docker install script

Pull Request - State: closed - Opened by jwokaty over 3 years ago - 3 comments

#80 - Add rawrr dependencies in Ubuntu

Pull Request - State: closed - Opened by jwokaty over 3 years ago - 1 comment

#79 - Update where the builds are

Pull Request - State: closed - Opened by jwokaty over 3 years ago - 1 comment

#78 - README.md "What builds where" update needed

Issue - State: closed - Opened by vjcitn over 3 years ago

#77 - Update cpus in data-experimenet config.sh

Pull Request - State: closed - Opened by jwokaty over 3 years ago - 1 comment

#76 - Add 3.14 config files and scripts

Pull Request - State: closed - Opened by jwokaty over 3 years ago

#75 - Add notes for accessing biocbuild and rsbml install

Pull Request - State: closed - Opened by jwokaty over 3 years ago

#71 - WISH: _R_CHECK_LENGTH_1_LOGIC2_=package:_R_CHECK_PACKAGE_NAME_,abort,verbose

Issue - State: closed - Opened by HenrikBengtsson almost 5 years ago - 16 comments

#70 - Minor formatting proposals

Pull Request - State: closed - Opened by kant over 5 years ago - 1 comment

#69 - Guaranteeing vignette link integrity in workflows

Issue - State: closed - Opened by LTLA over 5 years ago - 3 comments

#68 - rjava not available in merida2

Issue - State: closed - Opened by aravind-j almost 6 years ago - 1 comment

#67 - Since the location of the testing changes to "sandbox"

Pull Request - State: closed - Opened by nturaga about 6 years ago

#66 - Feature/package selection

Pull Request - State: open - Opened by sneumann over 6 years ago - 2 comments

#65 - Subsetting Multiple platform build/check report summary

Issue - State: open - Opened by sneumann over 6 years ago

#64 - Consistent use of `,` in 'stoplights'

Issue - State: closed - Opened by mtmorgan almost 7 years ago - 1 comment

#63 - Reliable timeout for computing code coverage

Issue - State: closed - Opened by aoles almost 7 years ago - 3 comments

#62 - Modifications to enable git transition

Pull Request - State: closed - Opened by aoles over 7 years ago

#61 - Improve Continuous Integration

Pull Request - State: closed - Opened by b-long about 8 years ago - 3 comments

#60 - It is not neccesary to extract HTML vignettes separately and to Stangle them

Pull Request - State: closed - Opened by aoles over 8 years ago - 1 comment

#58 - BBS should run 'svn-clean' on MEAT0 after updating, before proceeding

Issue - State: closed - Opened by dtenenba almost 9 years ago - 1 comment

#57 - 'packages with impossible dependencies' are still propagating

Issue - State: closed - Opened by dtenenba almost 9 years ago - 2 comments

#56 - show version of pandoc installed on build machines

Issue - State: closed - Opened by dtenenba almost 9 years ago - 1 comment
Labels: enhancement

#55 - biocadmin prepareRepos code is inefficient/repetitive

Issue - State: open - Opened by dtenenba almost 9 years ago
Labels: enhancement

#54 - refactor report code to use templates

Issue - State: closed - Opened by dtenenba almost 9 years ago - 2 comments
Labels: enhancement

#53 - stagger the uptime of cytoscape3 docker containers

Issue - State: closed - Opened by dtenenba almost 9 years ago - 2 comments

#52 - server.py stops responding after first message

Issue - State: closed - Opened by dtenenba almost 9 years ago - 3 comments

#51 - Merge "feature/migrate_back_to_hutch" into "master"

Pull Request - State: closed - Opened by b-long almost 9 years ago
Labels: enhancement

#50 - Shellcheck all 3.2 and 3.3 scripts.

Pull Request - State: closed - Opened by b-long almost 9 years ago

#49 - Remove unnecessary continuation characters.

Pull Request - State: closed - Opened by b-long almost 9 years ago

#48 - Every time you ssh to biocbuild@zin* it sends an email to biocbuild

Issue - State: closed - Opened by dtenenba almost 9 years ago - 5 comments
Labels: bug

#47 - Feature/add docs for updating r

Pull Request - State: closed - Opened by b-long almost 9 years ago - 2 comments

#46 - Build report should indicate package deprecation status

Issue - State: closed - Opened by dtenenba almost 9 years ago - 2 comments
Labels: enhancement

#45 - Archive all pushed package versions

Issue - State: closed - Opened by mtmorgan almost 9 years ago - 1 comment
Labels: enhancement

#44 - Allow ForceInstall in .BBSoptions

Issue - State: closed - Opened by mtmorgan almost 9 years ago - 5 comments

#43 - Awkward deployment to zin2

Issue - State: closed - Opened by b-long almost 9 years ago
Labels: wontfix

#42 - No need for continuation characters

Issue - State: closed - Opened by b-long almost 9 years ago - 3 comments
Labels: enhancement

#41 - Shellcheck

Pull Request - State: closed - Opened by jimhester almost 9 years ago - 1 comment

#40 - Changes to support running SPB locally

Pull Request - State: closed - Opened by b-long almost 9 years ago - 7 comments

#39 - Print all Rout files rather than special casing

Pull Request - State: closed - Opened by jimhester almost 9 years ago - 11 comments