BiocPy/SingleCellExperiment issues and pull requests

#49 - Raise an Exception if the `column_data` `row_names` of the `alternative_experiments` are not the same as those of the main experiment.

Issue - State: open - Opened by DiDeoxy 3 months ago

#48 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: open - Opened by pre-commit-ci[bot] 4 months ago

#47 - Enforce version of anndata compatible with mudata for python<=3.9

Pull Request - State: closed - Opened by jkanche 4 months ago

#46 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago - 1 comment

#45 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 8 months ago

#44 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 8 months ago

#43 - sync with tutorial

Pull Request - State: closed - Opened by jkanche 8 months ago

#42 - add option to realize assays

Pull Request - State: closed - Opened by jkanche 8 months ago

#41 - Compatibility with non-dict types in `uns` when reading from H5AD files.

Pull Request - State: closed - Opened by jkanche 9 months ago

#40 - `uns` may not be a dictionary when reading H5AD files

Issue - State: closed - Opened by jkanche 10 months ago

#39 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 10 months ago

#38 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago

#37 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago

#36 - Use delayed arrays when loading 10x h5 files

Pull Request - State: closed - Opened by jkanche 12 months ago

#35 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 12 months ago

#34 - better support to anndata

Pull Request - State: closed - Opened by jkanche 12 months ago

#33 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#32 - Fix bugs in accessor methods

Pull Request - State: closed - Opened by jkanche about 1 year ago

#31 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#30 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#29 - Fix subset operation on `SingleCellExperiment` slots

Pull Request - State: closed - Opened by jkanche about 1 year ago

#28 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#27 - update CHANGELOG

Pull Request - State: closed - Opened by jkanche about 1 year ago

#26 - getting started on combine ops

Pull Request - State: closed - Opened by jkanche about 1 year ago

#25 - Update GitHub action to test multiple Python versions

Pull Request - State: closed - Opened by jkanche about 1 year ago

#24 - Overhaul `SingleCellExperiment`

Pull Request - State: closed - Opened by jkanche about 1 year ago - 1 comment

#23 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#22 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#21 - alternative experiments defaults to empty dictionary

Pull Request - State: closed - Opened by jkanche over 1 year ago

#20 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#19 - Why does SCE default to `None` for the alternative experiments?

Issue - State: closed - Opened by LTLA over 1 year ago

#18 - SCE extends `RangedSummarizedExperiment`

Pull Request - State: closed - Opened by jkanche over 1 year ago

#17 - SingleCellExperiment should extend RangedSummarizedExperiment

Issue - State: closed - Opened by DiDeoxy over 1 year ago

#16 - BiocFrames should be preferred over pandas DFs during construction.

Pull Request - State: closed - Opened by LTLA over 1 year ago

#15 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#14 - decode feature and barcode information from h5 as ascii

Pull Request - State: closed - Opened by jkanche over 1 year ago

#13 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#12 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#11 - update pre-commit config

Pull Request - State: closed - Opened by jkanche over 1 year ago

#10 - Following Python's style guide

Pull Request - State: closed - Opened by jkanche over 1 year ago

#9 - Export BaseSE class

Issue - State: closed - Opened by DiDeoxy over 1 year ago - 4 comments

#8 - feat: implement concat

Pull Request - State: closed - Opened by keviny2 over 1 year ago

#7 - concat SingleCellExperiments

Issue - State: closed - Opened by keviny2 over 1 year ago - 1 comment

#6 - export sample mapping to uns

Issue - State: closed - Opened by jkanche almost 2 years ago - 1 comment

#5 - export to MuData

Issue - State: closed - Opened by jkanche almost 2 years ago - 1 comment

#4 - validate alternative experiments; must contain the same number of cells

Issue - State: closed - Opened by jkanche almost 2 years ago - 1 comment

GitHub / BiocPy/SingleCellExperiment issues and pull requests