Ecosyste.ms: Issues

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GitHub / BioSystemsUM/troppo issues and pull requests

#42 - Troppo_tutorial_GIMME seem to have problems

Issue - State: open - Opened by Ananas-bio 3 months ago - 2 comments

#41 - gene level thresholding code questions

Issue - State: open - Opened by hmbaghdassarian 3 months ago

#40 - Added pyproject with minimum dependencies

Pull Request - State: open - Opened by JoshLoecker 4 months ago

#39 - Merge dev into main

Pull Request - State: closed - Opened by ao60337 4 months ago

#37 - [FIX] Hot fix on the gene level thresholding documentation.

Pull Request - State: closed - Opened by ao60337 6 months ago

#36 - Dev

Pull Request - State: closed - Opened by ao60337 7 months ago
Labels: bug, enhancement

#35 - Update dev branch

Pull Request - State: closed - Opened by ao60337 7 months ago

#34 - Merge pull request #33 from BioSystemsUM/documentation

Pull Request - State: closed - Opened by ao60337 7 months ago

#33 - Documentation

Pull Request - State: closed - Opened by ao60337 7 months ago

#32 - Revert "First finished version of the Documentation"

Pull Request - State: closed - Opened by ao60337 7 months ago

#31 - First finished version of the Documentation

Pull Request - State: closed - Opened by ao60337 7 months ago
Labels: enhancement

#30 - Dev

Pull Request - State: closed - Opened by ao60337 7 months ago

#29 - [ADD] Add readthedocs.

Pull Request - State: closed - Opened by ao60337 7 months ago
Labels: enhancement

#28 - Dev

Pull Request - State: closed - Opened by ao60337 7 months ago

#27 - Documentation

Pull Request - State: closed - Opened by ao60337 7 months ago
Labels: enhancement

#26 - Dev

Pull Request - State: closed - Opened by ao60337 7 months ago

#25 - Hot fix

Pull Request - State: closed - Opened by ao60337 8 months ago

#24 - [ADD] Added Gene Level Thresholding methods to the omics subpackage o…

Pull Request - State: closed - Opened by ao60337 8 months ago
Labels: enhancement

#23 - Package refactoring

Pull Request - State: closed - Opened by ao60337 9 months ago
Labels: enhancement

#22 - TypeError: float() argument must be a string or a number, not 'list'.

Issue - State: closed - Opened by Rohak72 about 1 year ago - 2 comments

#21 - Package Refator

Pull Request - State: closed - Opened by ao60337 over 1 year ago

#20 - Package refactoring

Pull Request - State: closed - Opened by ao60337 over 1 year ago
Labels: enhancement

#19 - GIMME doesn't work properly.

Issue - State: closed - Opened by AlirezaShokrollahi over 1 year ago

#17 - mapExpressionToReactions function

Issue - State: closed - Opened by AlirezaShokrollahi almost 2 years ago

#16 - Error in test file

Issue - State: open - Opened by newmoongod about 2 years ago

#15 - Fixes to tINIT errors and GIMME output

Pull Request - State: closed - Opened by ao60337 about 2 years ago
Labels: bug, enhancement

#14 - numpy problem in tINIT

Issue - State: closed - Opened by aschluter about 3 years ago - 1 comment

#13 - tINIT error with `essential_reactions` and `no_reverse_loops` inputs

Issue - State: closed - Opened by JonathanRob over 4 years ago - 2 comments
Labels: bug

#12 - GIMME output doesn't make sense

Issue - State: closed - Opened by bpuniya over 4 years ago - 2 comments
Labels: bug

#11 - ModuleNotFoundError: No module named 'cobamp.utilities.context'

Issue - State: closed - Opened by lokanandk over 4 years ago - 3 comments

#10 - Implement Table/Excel formatted task file reader

Issue - State: closed - Opened by skapur over 4 years ago - 3 comments

#9 - Dev

Pull Request - State: closed - Opened by jorgemlferreira over 4 years ago

#8 - Dev

Pull Request - State: closed - Opened by jorgemlferreira over 4 years ago

#7 - Add Gapfill wrapper class and new prototypes for omics data classes

Pull Request - State: closed - Opened by skapur over 4 years ago

#6 - Add TabularContainer classes

Pull Request - State: closed - Opened by skapur over 4 years ago

#5 - Refactor OmicsContainer and OmicsDataMap classes to allow multi-sample preprocessing

Issue - State: open - Opened by skapur over 4 years ago - 1 comment
Labels: enhancement, help wanted

#4 - Implement generic GapfillWrapper

Issue - State: closed - Opened by skapur almost 5 years ago - 1 comment
Labels: enhancement

#3 - Dev

Pull Request - State: closed - Opened by jorgemlferreira about 5 years ago

#2 - [ADD] utilities to be used with the models

Pull Request - State: closed - Opened by jorgemlferreira almost 6 years ago

#1 - [REFACTOR] changed the name of some packages to fit the new name, troppo

Pull Request - State: closed - Opened by skapur almost 6 years ago