GitHub / BioJulia/SequenceVariation.jl issues and pull requests
#44 - No error in haplotype with incompatible variations
Issue -
State: open - Opened by ljournot 6 months ago
- 2 comments
#42 - [Feature]: Add `alignment` and `cigar` getters
Pull Request -
State: open - Opened by MillironX over 2 years ago
- 1 comment
#41 - [Feature]: Add checker for contradicting `Variation`s and `Haplotype`s
Issue -
State: open - Opened by MillironX over 2 years ago
#40 - [Feature]: Add ability to `translate` from one haplotype to another
Issue -
State: open - Opened by MillironX over 2 years ago
Labels: enhancement
#39 - [Feature]: Add getter for alignment of a haplotype to its reference
Issue -
State: open - Opened by MillironX over 2 years ago
Labels: enhancement
#38 - Release v0.2.2
Pull Request -
State: closed - Opened by MillironX over 2 years ago
- 1 comment
#37 - Fix validation for Haplotypes
Pull Request -
State: closed - Opened by MillironX over 2 years ago
- 3 comments
#36 - Multiple `Substitution`s doesn't invalidate `Haplotype`
Issue -
State: closed - Opened by MillironX over 2 years ago
#35 - Release v0.2.1
Pull Request -
State: closed - Opened by MillironX over 2 years ago
- 1 comment
#34 - Better error descriptions
Pull Request -
State: closed - Opened by MillironX over 2 years ago
- 1 comment
#33 - Release v0.2.0
Pull Request -
State: closed - Opened by MillironX over 2 years ago
- 1 comment
#32 - Add `isless` for `Edit` and `Variation`
Pull Request -
State: closed - Opened by MillironX over 2 years ago
- 1 comment
#31 - Add `translate` functionality for haplotypes
Pull Request -
State: closed - Opened by MillironX over 2 years ago
- 1 comment
#30 - Refactor `reconstruct` function
Pull Request -
State: closed - Opened by MillironX over 2 years ago
- 1 comment
#29 - Rename `Variant` to `Haplotype`
Pull Request -
State: closed - Opened by MillironX over 2 years ago
- 1 comment
#28 - Organize/stylize code and docs
Pull Request -
State: closed - Opened by MillironX over 2 years ago
- 5 comments
#27 - Release v0.1.4
Pull Request -
State: closed - Opened by MillironX over 2 years ago
- 1 comment
#26 - Fix softclips causing Variant construction errors
Pull Request -
State: closed - Opened by MillironX over 2 years ago
- 1 comment
#25 - Soft clips cause invalid Variants
Issue -
State: closed - Opened by MillironX over 2 years ago
- 1 comment
#24 - Release v0.1.3
Pull Request -
State: closed - Opened by MillironX over 2 years ago
- 1 comment
#23 - Add type parameterization to variations getter
Pull Request -
State: closed - Opened by MillironX over 2 years ago
- 1 comment
#22 - Release v0.1.2
Pull Request -
State: closed - Opened by MillironX almost 3 years ago
- 1 comment
#21 - Update dependencies
Pull Request -
State: closed - Opened by MillironX almost 3 years ago
- 1 comment
#20 - Unambiguate type nomenclature
Issue -
State: closed - Opened by MillironX almost 3 years ago
- 2 comments
Labels: enhancement, help wanted, question
#19 - Release v0.1.1
Pull Request -
State: closed - Opened by MillironX about 3 years ago
- 1 comment
#18 - Add constructor for Variant based on Variations
Pull Request -
State: closed - Opened by MillironX about 3 years ago
- 1 comment
#17 - TagBot trigger issue
Issue -
State: closed - Opened by JuliaTagBot about 3 years ago
- 9 comments
#16 - Add reference and alternate base getters for Variation
Pull Request -
State: closed - Opened by MillironX about 3 years ago
- 1 comment
#15 - CompatHelper: bump compat for BioSymbols to 5, (keep existing compat)
Pull Request -
State: closed - Opened by github-actions[bot] about 3 years ago
- 2 comments
#14 - CompatHelper: bump compat for BioSequences to 3, (keep existing compat)
Pull Request -
State: closed - Opened by github-actions[bot] about 3 years ago
- 2 comments
#13 - Feature: Create functions to get reference and alternate bases from `Variation`
Issue -
State: closed - Opened by MillironX about 3 years ago
#12 - Prepare for package registration
Pull Request -
State: closed - Opened by MillironX about 3 years ago
- 3 comments
#11 - Add functions to get `Variation`s from `Variant`
Pull Request -
State: closed - Opened by MillironX about 3 years ago
#10 - Add equality functions for Variation
Pull Request -
State: closed - Opened by MillironX about 3 years ago
#9 - Feature/variations-parse
Pull Request -
State: closed - Opened by MillironX about 3 years ago
#8 - Feature request: Include in GeneticVariation or register as standalone package
Issue -
State: closed - Opened by MillironX about 3 years ago
- 10 comments
#7 - Feature request: Add a function to create `Variations` from edit strings
Issue -
State: closed - Opened by MillironX about 3 years ago
#6 - Feature request: Add equality functions for `Variation`
Issue -
State: closed - Opened by MillironX about 3 years ago
#5 - Feature request: Add method to extract `Variation`s from `Variant`s
Issue -
State: closed - Opened by MillironX about 3 years ago
#4 - Fix inconsistent Variation positions
Pull Request -
State: closed - Opened by MillironX about 3 years ago
- 1 comment
#3 - Fix show function for Variations with Insertion edits
Pull Request -
State: closed - Opened by MillironX about 3 years ago
#2 - [Bug]: `Variation`s from different starting places give incorrect positions
Issue -
State: closed - Opened by MillironX about 3 years ago
#1 - [Bug]: Cannot `show` `Variation` of `Insertion`
Issue -
State: closed - Opened by MillironX about 3 years ago