Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / BigDataBiology/argNorm issues and pull requests
#68 - ENH update argNorm overview figure to reflect final version for publication
Pull Request -
State: closed - Opened by Vedanth-Ramji 22 days ago
#67 - DOC add link to funcscan
Pull Request -
State: closed - Opened by Vedanth-Ramji about 1 month ago
#66 - Update docs for v0.6.0
Pull Request -
State: closed - Opened by Vedanth-Ramji about 1 month ago
#65 - ADD code to give percentages & frequencies of perfect, strict, and loose hits
Pull Request -
State: closed - Opened by Vedanth-Ramji about 1 month ago
#64 - Update SARG db link in crude_db_harmonisation
Pull Request -
State: closed - Opened by Vedanth-Ramji about 1 month ago
#63 - RFCT remove groot_ref_db parameter in map_to_aro
Pull Request -
State: closed - Opened by Vedanth-Ramji about 2 months ago
#62 - ADD groot ARO mapping
Pull Request -
State: closed - Opened by Vedanth-Ramji about 2 months ago
#61 - ADD raw & hamronized example groot outputs to test groot normalizer
Pull Request -
State: closed - Opened by Vedanth-Ramji 2 months ago
- 1 comment
#60 - ADD groot normalizer
Pull Request -
State: closed - Opened by Vedanth-Ramji 2 months ago
- 5 comments
#59 - Option to summarize multiple tool outputs into a single report
Issue -
State: open - Opened by Matt-BF 2 months ago
- 1 comment
#58 - DOC add nf-core module installation
Pull Request -
State: closed - Opened by Vedanth-Ramji 3 months ago
#57 - ENH load CARD v3.2.9 when using RGI
Pull Request -
State: closed - Opened by Vedanth-Ramji 3 months ago
#56 - ENH handle AROs as string rather than int in get_aro_mapping_table()
Pull Request -
State: closed - Opened by Vedanth-Ramji 3 months ago
- 2 comments
#55 - Updated manual curation for misannotated genes
Pull Request -
State: closed - Opened by Vedanth-Ramji 3 months ago
- 1 comment
#54 - ENH Update drug categorization logic
Pull Request -
State: closed - Opened by Vedanth-Ramji 3 months ago
#53 - ADD use all parents for gene to drug mapping
Pull Request -
State: closed - Opened by Vedanth-Ramji 3 months ago
#52 - BUG manually curate misannotated gene
Pull Request -
State: closed - Opened by Vedanth-Ramji 3 months ago
#51 - ENH Update drug categorization logic
Pull Request -
State: closed - Opened by Vedanth-Ramji 4 months ago
#50 - Remove duplicate mappings & sort megares_ARO_mapping
Pull Request -
State: closed - Opened by Vedanth-Ramji 4 months ago
- 1 comment
#49 - DOC Update changelog with adding missing manual curtion & case-independent inputs on command-line
Pull Request -
State: closed - Opened by Vedanth-Ramji 4 months ago
#48 - ADD missing ARO mappings to manual curation
Pull Request -
State: closed - Opened by Vedanth-Ramji 4 months ago
- 4 comments
#47 - DOC improve index.md
Pull Request -
State: closed - Opened by Vedanth-Ramji 4 months ago
#46 - ENH specific version for NCBI in db_harmonisation & clean up harmonisation code
Pull Request -
State: closed - Opened by Vedanth-Ramji 4 months ago
#45 - ENH Improve MEGARes Mappings
Pull Request -
State: closed - Opened by Vedanth-Ramji 5 months ago
#44 - Update test_lib.py
Pull Request -
State: closed - Opened by sebastianLedzianowski 5 months ago
#43 - Update cli.py
Pull Request -
State: closed - Opened by sebastianLedzianowski 5 months ago
- 3 comments
#42 - ENH handle mapping not in ARO in map_to_aro function & simplify map_to_aro() code
Pull Request -
State: closed - Opened by Vedanth-Ramji 5 months ago
#41 - Update requirements.txt
Pull Request -
State: closed - Opened by sebastianLedzianowski 5 months ago
- 2 comments
#40 - argNorm should accept inputs in case-independent way (on command line)
Issue -
State: closed - Opened by luispedro 5 months ago
- 2 comments
Labels: enhancement, good first issue
#39 - DOC: Improve documentation for v0.3.0
Pull Request -
State: closed - Opened by Vedanth-Ramji 5 months ago
#38 - ADD: cluster and reverse complement correction for resfinder
Pull Request -
State: closed - Opened by Vedanth-Ramji 5 months ago
- 3 comments
#37 - Document argannot amino acid file update in changelog
Pull Request -
State: closed - Opened by Vedanth-Ramji 6 months ago
#36 - ENH Get amino acid file for argannot rather than nucleotide file
Pull Request -
State: closed - Opened by Vedanth-Ramji 6 months ago
- 3 comments
#35 - ENH update conda install command to make sure conda-forge is used
Pull Request -
State: closed - Opened by Vedanth-Ramji 6 months ago
#34 - AttributeError: module 'collections' has no attribute 'Mapping'
Issue -
State: open - Opened by VittoriaOssanna 6 months ago
- 6 comments
#33 - ADD docs for conda installation
Pull Request -
State: closed - Opened by Vedanth-Ramji 6 months ago
#32 - ADD resfinderfg integrated with normalizers
Pull Request -
State: closed - Opened by Vedanth-Ramji 6 months ago
#31 - ENH Update argannot to V6
Pull Request -
State: closed - Opened by Vedanth-Ramji 6 months ago
#30 - BUG duplicated resfinder fixed
Pull Request -
State: closed - Opened by Vedanth-Ramji 6 months ago
- 2 comments
#29 - DOC improve index.md
Pull Request -
State: closed - Opened by Vedanth-Ramji 6 months ago
- 1 comment
#28 - ADD lib.py to make argnorm usable as a library
Pull Request -
State: closed - Opened by Vedanth-Ramji 6 months ago
- 2 comments
#27 - ENH Remove warnings, add db validation for AbricateNormalizer, add file being normalized in CLI msg.
Pull Request -
State: closed - Opened by Vedanth-Ramji 6 months ago
#26 - DOC added argNorm workflow figure
Pull Request -
State: closed - Opened by Vedanth-Ramji 6 months ago
- 2 comments
#25 - ADD Update documentation
Pull Request -
State: closed - Opened by Vedanth-Ramji 6 months ago
#24 - ENH Update drug categorization to use drug categories of superclasses.
Pull Request -
State: closed - Opened by Vedanth-Ramji 6 months ago
#23 - ENH Updated manual curation for latest RGI
Pull Request -
State: closed - Opened by Vedanth-Ramji 6 months ago
- 1 comment
#22 - ENH Update pytest tests & add integration tests
Pull Request -
State: closed - Opened by Vedanth-Ramji 6 months ago
#21 - Improved testing
Pull Request -
State: closed - Opened by Vedanth-Ramji 7 months ago
#20 - Improved Testing
Pull Request -
State: closed - Opened by Vedanth-Ramji 7 months ago
#19 - Correct mappings
Pull Request -
State: closed - Opened by Vedanth-Ramji 7 months ago
#18 - Corrected mappings to match output of crude_db_harmonisation.py
Pull Request -
State: closed - Opened by Vedanth-Ramji 7 months ago
- 1 comment
#17 - Resfinderfg and sargfam update
Pull Request -
State: closed - Opened by Vedanth-Ramji 7 months ago
#16 - Removed python syntax in output.
Pull Request -
State: closed - Opened by Vedanth-Ramji 7 months ago
#15 - Added new column headings. Index removed in output
Pull Request -
State: closed - Opened by Vedanth-Ramji 7 months ago
#14 - manual_curation data missing in pypi v0.1.0
Issue -
State: closed - Opened by danielpodlesny 7 months ago
- 1 comment
#13 - Update manual curation
Pull Request -
State: closed - Opened by Vedanth-Ramji 8 months ago
#12 - Hamronized resfinderfg support and new outputs
Pull Request -
State: closed - Opened by Vedanth-Ramji 9 months ago
- 1 comment
#11 - Hamronized amrfinderplus support
Pull Request -
State: closed - Opened by danielpodlesny 11 months ago
- 1 comment
#10 - amrfinderplus support & conda installation
Issue -
State: closed - Opened by JFsanchezherrero 11 months ago
- 3 comments
#9 - Aro annot update
Pull Request -
State: closed - Opened by Vedanth-Ramji 11 months ago
- 1 comment
#8 - Drug Categorization Code Added
Pull Request -
State: closed - Opened by Vedanth-Ramji about 1 year ago
- 1 comment
#7 - input for argNorm for ARGs-OAP
Issue -
State: closed - Opened by ellyyuyang over 1 year ago
- 1 comment
#6 - Refactor
Pull Request -
State: closed - Opened by luispedro over 2 years ago
#5 - Better tests
Pull Request -
State: closed - Opened by luispedro over 2 years ago
#4 - Better build
Pull Request -
State: closed - Opened by luispedro over 2 years ago
#3 - ENH reimplement argnorm with subclassing
Pull Request -
State: closed - Opened by AdeBC over 2 years ago
#2 - BUG BLD Fix module name
Pull Request -
State: closed - Opened by luispedro over 2 years ago
#1 - Resfinderfg support
Issue -
State: closed - Opened by AdeBC over 2 years ago
- 1 comment
Labels: enhancement