Big-Life-Lab/PHES-ODM issues and pull requests

#272 - measures.value needs a longer max-length

Issue - State: open - Opened by zargot 15 days ago

#271 - Updating for 2.2.3

Pull Request - State: closed - Opened by mathew-thomson about 2 months ago

#270 - Addition patch issues to allow SQL automation

Pull Request - State: closed - Opened by mathew-thomson 4 months ago
Labels: bug

#269 - Additional Patch issue - Further Duplications and MissingnessSet naming

Issue - State: closed - Opened by mathew-thomson 4 months ago

#268 - v2.2.1 Patch -> Correcting Zones table issue & Duplicate partIDs in 2.2

Pull Request - State: closed - Opened by mathew-thomson 4 months ago
Labels: bug

#267 - ISO Code mistakes in the zones table of version 2.2; Repeating partIDs

Issue - State: closed - Opened by mathew-thomson 4 months ago - 1 comment

#266 - Updates for V2.2.0 Release

Pull Request - State: closed - Opened by mathew-thomson 6 months ago

#265 - Additional bio measures

Issue - State: open - Opened by DougManuel about 1 year ago
Labels: enhancement

#264 - Release Automation

Pull Request - State: open - Opened by rvyuha about 1 year ago

#263 - Release 2.1.1

Pull Request - State: open - Opened by rvyuha about 1 year ago

#262 - Mapping specs

Pull Request - State: open - Opened by mathew-thomson about 1 year ago

#261 - GitHub action integration

Pull Request - State: closed - Opened by rvyuha about 1 year ago

#260 - GitHub integration

Pull Request - State: closed - Opened by rvyuha about 1 year ago - 1 comment

#259 - [BOT] Release 2.1.1

Pull Request - State: closed - Opened by rvyuha about 1 year ago

#258 - test

Pull Request - State: closed - Opened by rvyuha about 1 year ago

#257 - File removal and introduction of logging

Pull Request - State: closed - Opened by rvyuha over 1 year ago

#256 - File Creation

Pull Request - State: closed - Opened by rvyuha over 1 year ago

#255 - File creation refactor

Pull Request - State: closed - Opened by rvyuha over 1 year ago - 1 comment

#254 - Parts Table order

Issue - State: closed - Opened by jeandavidt over 1 year ago - 3 comments
Labels: bug, V2.0

#253 - Added files validation

Pull Request - State: closed - Opened by rvyuha over 1 year ago - 1 comment

#252 - Add normalization measures

Issue - State: closed - Opened by DougManuel over 1 year ago - 1 comment
Labels: New variable request

#251 - Fixed outdated link and created png

Pull Request - State: closed - Opened by rvyuha over 1 year ago - 2 comments

#250 - Temporary dependency for old QPCR Analyzer

Pull Request - State: closed - Opened by martinwellman over 1 year ago - 1 comment

#249 - Version 2.1.0

Pull Request - State: closed - Opened by mathew-thomson over 1 year ago

#248 - Added plantuml for workflow description

Pull Request - State: closed - Opened by rvyuha over 1 year ago - 2 comments

#247 - Added the specifications for automation the ODM release process

Pull Request - State: closed - Opened by yulric over 1 year ago

#246 - V2.0.0 rc.3 - Final work for V2.0.0

Pull Request - State: closed - Opened by mathew-thomson over 1 year ago

#245 - pHDept and healthReg in table sites

Issue - State: open - Opened by wastewater-belgium over 1 year ago - 1 comment

#244 - License categories for dataset table and partID = measureLic

Issue - State: closed - Opened by DougManuel over 1 year ago - 1 comment
Labels: enhancement

#243 - Hierarchical foreign keys

Issue - State: closed - Opened by draos almost 2 years ago - 7 comments

#242 - ISO tables for region and country

Issue - State: closed - Opened by DougManuel almost 2 years ago - 1 comment

#241 - Add an indication of mandatory fields to ERD

Issue - State: closed - Opened by DougManuel almost 2 years ago - 1 comment

#240 - Review and update sequencing reporting

Issue - State: open - Opened by DougManuel almost 2 years ago

#239 - Added tutorial images and new blurb for V2

Pull Request - State: closed - Opened by mathew-thomson almost 2 years ago

#238 - V2 RC2

Pull Request - State: closed - Opened by mathew-thomson about 2 years ago - 8 comments

#237 - Clean-up Version two draft branch

Pull Request - State: closed - Opened by DougManuel about 2 years ago

#236 - `pooled` and recording pooled samples through the Parent-Child relationship

Issue - State: closed - Opened by mathew-thomson about 2 years ago - 19 comments

#235 - `hasChild` Boolean Field for Parent-Child variables?

Issue - State: closed - Opened by mathew-thomson about 2 years ago - 10 comments

#234 - Updated the Contributing MD file

Pull Request - State: closed - Opened by yulric about 2 years ago - 3 comments

#233 - Set Table - SetID is not unique

Issue - State: closed - Opened by Bahamyirou about 2 years ago - 1 comment

#232 - Recommend a site, sample and measure ID names

Issue - State: closed - Opened by DougManuel about 2 years ago - 6 comments

#231 - Separate Quality Flag columns for each quality flag or each type of quality flag

Issue - State: closed - Opened by heather-i about 2 years ago - 14 comments
Labels: V1.1, V2.0

#230 - Review approach to record time-specific measure

Issue - State: closed - Opened by DougManuel over 2 years ago
Labels: documentation, for discussion

#229 - version number for depreciated parts

Issue - State: closed - Opened by DougManuel over 2 years ago

#228 - V2.0 release candidate 1

Pull Request - State: closed - Opened by mathew-thomson over 2 years ago - 1 comment

#227 - Missing Data Category Set

Issue - State: closed - Opened by mathew-thomson over 2 years ago - 1 comment

#226 - minimal documentation example - the parts list

Pull Request - State: closed - Opened by DougManuel over 2 years ago - 3 comments

#225 - Building out sequencing metadata

Issue - State: closed - Opened by mathew-thomson over 2 years ago - 1 comment

#224 - Minimum or recommended metadata

Issue - State: closed - Opened by DougManuel over 2 years ago - 1 comment
Labels: enhancement, help wanted

#223 - V2/documentation - flesh out example

Pull Request - State: closed - Opened by mathew-thomson over 2 years ago - 1 comment

#222 - max/min value

Issue - State: closed - Opened by mathew-thomson over 2 years ago - 4 comments

#221 - Add COSCa as a Fraction Analyzed type

Issue - State: closed - Opened by Bahamyirou over 2 years ago - 5 comments

#220 - Validation specification

Pull Request - State: closed - Opened by DougManuel over 2 years ago - 1 comment

#219 - Language and Translation tables included in the parts list?

Issue - State: closed - Opened by mathew-thomson almost 3 years ago - 5 comments

#215 - Population - Site population, polygon population, and population measures

Issue - State: closed - Opened by mathew-thomson almost 3 years ago - 2 comments
Labels: enhancement, for discussion, New variable request

#214 - disambiguation: `npmmov` and `nbrsv`

Issue - State: closed - Opened by jeandavidt almost 3 years ago - 1 comment

#212 - Site type - improved description required?

Issue - State: closed - Opened by DougManuel almost 3 years ago - 4 comments
Labels: enhancement, for discussion

#211 - Date and time measures

Issue - State: closed - Opened by DougManuel almost 3 years ago - 3 comments
Labels: enhancement, for discussion

#210 - Capturing Unquatifiable & Undetermined in the ERD

Issue - State: closed - Opened by Bahamyirou almost 3 years ago - 1 comment

#209 - valueFlag results quality indicators

Issue - State: closed - Opened by vipileggi almost 3 years ago - 3 comments

#208 - Add MHV into type of measurement

Issue - State: closed - Opened by Bahamyirou almost 3 years ago - 1 comment

#205 - Acknowledgements//Citations in the ESPH-ODM

Issue - State: closed - Opened by mathew-thomson about 3 years ago - 14 comments
Labels: New variable request

#203 - Outbreak occurring or under investigation

Issue - State: closed - Opened by DougManuel about 3 years ago - 9 comments

#202 - CO2

Issue - State: closed - Opened by DougManuel about 3 years ago - 2 comments
Labels: New variable request

#201 - Sites/locations with sub-sites

Issue - State: closed - Opened by DougManuel about 3 years ago - 1 comment
Labels: New variable request

#200 - Ontology approach and model entity relationship

Issue - State: closed - Opened by DougManuel about 3 years ago - 2 comments

#199 - Data input - suggested input tables and minimal data?

Issue - State: closed - Opened by DougManuel about 3 years ago - 8 comments
Labels: enhancement, help wanted, for discussion

#198 - Review CDC NWSS

Issue - State: closed - Opened by DougManuel about 3 years ago - 1 comment

#197 - Review NCBI dictionary

Issue - State: closed - Opened by DougManuel about 3 years ago - 1 comment

#196 - Review ENA dictionary

Issue - State: closed - Opened by DougManuel about 3 years ago - 1 comment

#195 - Review existing dictionaries and ontologies for V2

Issue - State: closed - Opened by DougManuel about 3 years ago - 4 comments

#194 - Re-Structure Some Variables to be more OBO Foundry Compliant?

Issue - State: closed - Opened by mathew-thomson about 3 years ago - 1 comment
Labels: documentation, for discussion

#193 - Add Instructions Column to Documentation Tables

Issue - State: closed - Opened by mathew-thomson about 3 years ago - 1 comment

#192 - Created github action code in sharing folder

Pull Request - State: closed - Opened by GauriSaran about 3 years ago

#191 - Sharing implementation of function in code for filtering rows

Pull Request - State: closed - Opened by GauriSaran about 3 years ago - 1 comment

#185 - Variables.csv vs. dictionary_table

Issue - State: closed - Opened by DougManuel about 3 years ago - 4 comments

#182 - Improved specimen approach

Issue - State: closed - Opened by DougManuel about 3 years ago - 1 comment

#181 - Short names for measure attributes

Issue - State: closed - Opened by DougManuel about 3 years ago - 4 comments

#180 - new table request: measureSet

Issue - State: closed - Opened by DougManuel about 3 years ago - 2 comments
Labels: enhancement

#179 - Software licence

Issue - State: closed - Opened by DougManuel about 3 years ago - 10 comments
Labels: for discussion

#178 - Implement mechanism to filter end-user accessible content based on data owner's grant of license and user ID (or similar)

Issue - State: closed - Opened by sorinsion about 3 years ago - 5 comments

GitHub / Big-Life-Lab/PHES-ODM issues and pull requests