BiaPyX/BiaPy issues and pull requests

#97 - Add GRN, ConvNeXtBlock_V2 and UpConvNeXtBlock_V2 blocks

Pull Request - State: closed - Opened by anepaniagua about 2 months ago

#96 - Update central point dilation to use ellipse footprint

Pull Request - State: closed - Opened by ClementCaporal 2 months ago

#95 - resunet++ issue due to layer normalization changes

Issue - State: closed - Opened by danifranco 2 months ago - 3 comments
Labels: bug

#94 - TEST.REUSE_PREDICTIONS is loading all images

Issue - State: closed - Opened by danifranco 3 months ago - 1 comment
Labels: bug

#93 - Add zoom config in preprocessing when using per_patch

Pull Request - State: closed - Opened by ClementCaporal 3 months ago - 4 comments

#92 - Avoid loading the entire data to create instance masks

Issue - State: closed - Opened by danifranco 3 months ago - 1 comment
Labels: enhancement

#91 - Speed up prediction by chunks

Issue - State: open - Opened by danifranco 3 months ago
Labels: enhancement

#90 - New super-resolution metrics (for train and test)

Pull Request - State: closed - Opened by IvanHCenalmor 3 months ago

#89 - Include new model U-NeXt.

Pull Request - State: closed - Opened by anepaniagua 3 months ago

#88 - Add indentation where needed in process sample by chunks

Pull Request - State: closed - Opened by ClementCaporal 3 months ago

#87 - Include new model U-NeXt.

Pull Request - State: closed - Opened by anepaniagua 3 months ago

#86 - Add option to choose metrics and repare some of the losses

Issue - State: closed - Opened by danifranco 3 months ago - 2 comments
Labels: enhancement

#85 - Update notebooks with visualization and inference cells.

Pull Request - State: closed - Opened by anepaniagua 3 months ago

#84 - CLI installation of Biapy (torch) for MacOS: Docs update

Issue - State: closed - Opened by Mohinta2892 4 months ago - 5 comments

#83 - Fix outdata_shape when C is not last dimension

Pull Request - State: closed - Opened by ClementCaporal 5 months ago

#82 - Support for patching over multiple datasets in Zarrs

Issue - State: closed - Opened by Mohinta2892 5 months ago - 2 comments

#81 - Memory error in UNET prediction with patches

Issue - State: closed - Opened by mcblache 5 months ago - 7 comments

#80 - Error with unet training. Capabilities problem ?

Issue - State: open - Opened by mcblache 5 months ago - 1 comment

#79 - error during TEST/INFERENCE using percentile normalization in detection workflow [bug]

Issue - State: closed - Opened by pr4deepr 6 months ago - 9 comments

#78 - documentation suggestion

Issue - State: closed - Opened by pr4deepr 6 months ago - 1 comment

#77 - bug: import error: pytorch_msssim

Issue - State: closed - Opened by pr4deepr 6 months ago - 1 comment

#76 - I2i development

Pull Request - State: closed - Opened by danifranco 6 months ago

#75 - Add more options to select patches for training

Issue - State: open - Opened by danifranco 6 months ago - 1 comment
Labels: enhancement

#74 - bug: Biapy crashes with detection workflow on latest branch

Issue - State: closed - Opened by pr4deepr 6 months ago - 1 comment

#73 - running biapy after pip install

Issue - State: closed - Opened by pr4deepr 6 months ago - 6 comments

#72 - Incorrect number of epochs on metric plot

Issue - State: closed - Opened by iarganda 6 months ago - 1 comment

#71 - C-channel-only instance segmentation

Pull Request - State: closed - Opened by iarganda 7 months ago

#70 - Notebooks update

Pull Request - State: closed - Opened by lenkaback 7 months ago

#69 - Link to templates from Docs broken for Super-resolution

Issue - State: closed - Opened by Mohinta2892 7 months ago - 1 comment

#68 - Multi thread detection

Pull Request - State: closed - Opened by ClementCaporal 7 months ago - 1 comment

#67 - Detection could be multi threaded

Issue - State: closed - Opened by ClementCaporal 7 months ago

#66 - Merge super resolution branch

Pull Request - State: closed - Opened by danifranco 7 months ago

#64 - Fix bug in base_workflow.py

Pull Request - State: closed - Opened by gnodar01 7 months ago - 2 comments

#63 - Rotation 90

Issue - State: closed - Opened by danifranco 8 months ago

#62 - Allow classes into instance segmentation workflow

Issue - State: closed - Opened by danifranco 8 months ago - 1 comment
Labels: enhancement

#61 - Remove imgaug dependency

Issue - State: open - Opened by danifranco 8 months ago - 3 comments
Labels: enhancement

#59 - Wrong net architecture in 3D Classification notebook

Issue - State: closed - Opened by iarganda 8 months ago - 2 comments

#58 - Error in 3D classification notebook

Issue - State: closed - Opened by iarganda 8 months ago - 1 comment

#57 - check in advance if df_patch is none

Pull Request - State: closed - Opened by ClementCaporal 8 months ago

#56 - check if detection is not null when creating dataframe.

Pull Request - State: closed - Opened by ClementCaporal 8 months ago

#55 - Error when first detection df_patch is null

Issue - State: closed - Opened by ClementCaporal 8 months ago

#54 - add overlap when splitting z dimension

Pull Request - State: closed - Opened by ClementCaporal 8 months ago

#53 - Fix patch position and overlap

Pull Request - State: closed - Opened by ClementCaporal 9 months ago

#52 - Merging Aitor changes (preprocessing)

Pull Request - State: closed - Opened by danifranco 9 months ago

#51 - New data preprocessing

Pull Request - State: closed - Opened by AAitorG 9 months ago

#50 - Possible Patch related errors for detection

Issue - State: closed - Opened by ClementCaporal 9 months ago - 12 comments

#46 - Add more image quality metrics

Issue - State: closed - Opened by iarganda 9 months ago - 1 comment
Labels: enhancement

#41 - Zarr/H5 post-processing for instance segmentation

Issue - State: open - Opened by danifranco 10 months ago
Labels: enhancement

#40 - Add more data pre-processing

Issue - State: closed - Opened by AAitorG 10 months ago

#39 - Add support for .nii.gz extension

Issue - State: open - Opened by danifranco 10 months ago
Labels: enhancement

#37 - Enable Bioimage Model Zoo pretrained models for training

Issue - State: closed - Opened by danifranco 10 months ago - 1 comment
Labels: enhancement

#36 - Incorporate Zarr/H5 as a source of training data

Issue - State: closed - Opened by danifranco 10 months ago - 1 comment
Labels: enhancement

GitHub / BiaPyX/BiaPy issues and pull requests