Ecosyste.ms: Issues

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GitHub / Becksteinlab/hop issues and pull requests

#35 - Walkers and gflux code

Pull Request - State: open - Opened by orbeckst almost 6 years ago - 1 comment

#34 - alpha 1 release: no transitions detected

Issue - State: closed - Opened by orbeckst almost 6 years ago - 4 comments
Labels: bug

#33 - hop-generate-hopgraph.py fails (networkx incompatibilities)

Issue - State: closed - Opened by orbeckst almost 6 years ago
Labels: bug

#32 - put docs on RTD

Issue - State: closed - Opened by orbeckst almost 6 years ago - 2 comments

#31 - user versioneer

Issue - State: closed - Opened by orbeckst almost 6 years ago

#30 - clean up hop.constants and use MDAnalysis

Issue - State: closed - Opened by orbeckst almost 6 years ago

#29 - clean up hop.density and use MDAnalysis

Issue - State: closed - Opened by orbeckst almost 6 years ago

#28 - remove external density creator

Issue - State: closed - Opened by orbeckst almost 6 years ago

#27 - Issue 23 volfix

Pull Request - State: closed - Opened by iwelland almost 8 years ago

#26 - Issue 23 volfix

Pull Request - State: closed - Opened by iwelland almost 8 years ago

#25 - Volume sorting fix

Pull Request - State: closed - Opened by iwelland almost 8 years ago

#24 - main-develop -> master

Pull Request - State: closed - Opened by iwelland almost 8 years ago - 1 comment

#23 - sites are not sorted by volume

Issue - State: closed - Opened by orbeckst almost 8 years ago - 7 comments
Labels: bug

#22 - trajectories are assumed to have skip_timestep/delta properties?

Issue - State: closed - Opened by iwelland almost 8 years ago - 2 comments

#21 - g_flux like tool

Issue - State: open - Opened by orbeckst almost 8 years ago

#20 - Develop

Pull Request - State: closed - Opened by iwelland about 8 years ago - 10 comments

#19 - Issue 12 iwelland additions

Pull Request - State: closed - Opened by iwelland about 8 years ago - 1 comment

#18 - Issue 12 iwelland

Pull Request - State: closed - Opened by iwelland about 8 years ago - 2 comments

#17 - checking calculated rates for the manual test

Issue - State: open - Opened by orbeckst about 8 years ago - 6 comments

#16 - upgrade code to work with MDAnalysis >= 0.11.0

Pull Request - State: closed - Opened by orbeckst about 8 years ago - 5 comments

#15 - use gridDataFormats

Issue - State: open - Opened by orbeckst about 8 years ago

#14 - visualization of hopping network

Issue - State: open - Opened by orbeckst over 8 years ago - 4 comments

#13 - add editor hint lines to all source files

Issue - State: open - Opened by orbeckst almost 9 years ago

#12 - merge Ian's code

Issue - State: open - Opened by orbeckst almost 9 years ago - 7 comments
Labels: enhancement, Priority-High

#11 - upgrade to work MDAnalysis 0.11.0

Issue - State: closed - Opened by orbeckst almost 9 years ago - 25 comments
Labels: Priority-Critical

#10 - documentation

Issue - State: closed - Opened by orbeckst about 9 years ago - 2 comments

#9 - Hop v0.3.3 requires MDAnalysis>0.7.4 but the present version is 0.7.4

Issue - State: closed - Opened by iorga over 12 years ago - 1 comment

#8 - easy_install from tar ball fails

Issue - State: closed - Opened by orbeckst almost 14 years ago - 1 comment

#7 - generate html documentation

Issue - State: closed - Opened by orbeckst almost 14 years ago - 2 comments

#6 - Density.export3D() broken

Issue - State: closed - Opened by orbeckst about 14 years ago - 1 comment

#5 - TAPtrajectory not working with MDAnalysis 0.6.2

Issue - State: open - Opened by orbeckst about 14 years ago - 2 comments

#4 - HeatmapAnalysis missing keys

Issue - State: open - Opened by denniej0 about 14 years ago

#3 - CombinedGraph plotting

Issue - State: closed - Opened by denniej0 about 14 years ago - 1 comment

#2 - unit tests required

Issue - State: open - Opened by orbeckst about 14 years ago - 6 comments

#1 - incompatible with networkx 1.x

Issue - State: closed - Opened by orbeckst about 14 years ago - 5 comments