Ecosyste.ms: Issues

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GitHub / BatzoglouLabSU/SIMLR issues and pull requests

#66 - Identify cluster memberships

Issue - State: closed - Opened by hajerkr over 1 year ago - 3 comments

#65 - Undefined function or variable 'projsplx_c'.

Issue - State: closed - Opened by hajerkr over 1 year ago - 1 comment

#64 - Development

Pull Request - State: closed - Opened by luca-dex over 1 year ago

#63 - cannot calculate tsne

Issue - State: closed - Opened by shizhuomu over 1 year ago - 1 comment

#62 - Development

Pull Request - State: closed - Opened by luca-dex over 2 years ago

#61 - RStudio Error in inDL(x, as.logical(local), as.logical(now), ...) :

Issue - State: closed - Opened by Jpsanm about 3 years ago - 2 comments

#60 - update to 1.19.1

Pull Request - State: closed - Opened by luca-dex about 3 years ago

#59 - Issue about compiling matlab code

Issue - State: closed - Opened by QianpengLi577 over 3 years ago - 3 comments

#57 - confusion about the implementation of Network_Diffusion

Issue - State: closed - Opened by yuxiaokang-source almost 4 years ago - 1 comment
Labels: question

#56 - applying SIMLR to pbmc3k dataset from seurat

Issue - State: closed - Opened by rojinsafavi almost 4 years ago - 3 comments

#55 - the row sum of the similarity(estimated by the SIMLR) isn't one!

Issue - State: closed - Opened by yuxiaokang-source about 4 years ago - 2 comments

#54 - Development

Pull Request - State: closed - Opened by luca-dex about 4 years ago

#53 - Development

Pull Request - State: closed - Opened by luca-dex about 4 years ago

#52 - defunct CIMLR functions

Pull Request - State: closed - Opened by luca-dex about 4 years ago

#51 - Development

Pull Request - State: closed - Opened by luca-dex about 4 years ago

#50 - check return value of fread

Pull Request - State: closed - Opened by luca-dex about 5 years ago

#49 - Error in detectCores() : could not find function "detectCores"

Issue - State: closed - Opened by TangYiChing about 5 years ago - 1 comment

#48 - how to add noises or dropout to data?

Issue - State: closed - Opened by xuebaliang over 5 years ago - 1 comment

#47 - R meet fatal error when use SILMLR package

Issue - State: closed - Opened by wwn7268 over 5 years ago - 4 comments

#45 - Error: cannot allocate vector of size 7.7 Gb

Issue - State: closed - Opened by xuebaliang over 5 years ago - 1 comment

#43 - Exection error

Issue - State: closed - Opened by jefferyUstc over 5 years ago - 1 comment

#42 - R version to 3.6

Pull Request - State: closed - Opened by luca-dex over 5 years ago

#41 - update minimum R requirement

Pull Request - State: closed - Opened by luca-dex over 5 years ago

#40 - Development

Pull Request - State: closed - Opened by luca-dex over 5 years ago

#39 - About the datasets

Issue - State: closed - Opened by ppfeng over 5 years ago - 1 comment

#38 - Simlr full

Pull Request - State: closed - Opened by andrewjgriffin over 6 years ago - 1 comment

#37 - SIMLR_Large_Scale error "double free or corruption"

Issue - State: closed - Opened by z5ouyang over 6 years ago - 5 comments

#36 - Real data

Issue - State: closed - Opened by ttgump over 6 years ago - 1 comment

#35 - sourceCpp error

Issue - State: closed - Opened by cramirezs over 6 years ago - 1 comment

#34 - question about method description

Issue - State: closed - Opened by februaryfang over 6 years ago - 5 comments

#33 - multiprocessing

Issue - State: closed - Opened by cimbusch over 6 years ago - 2 comments

#32 - Error at t-sne step

Issue - State: closed - Opened by goldenflaw almost 7 years ago - 5 comments

#31 - Dataset format

Issue - State: closed - Opened by nick-webster almost 7 years ago - 5 comments

#30 - SIMLR_Estimate_Number_of_Clusters Error

Issue - State: closed - Opened by qinzhu about 7 years ago - 8 comments
Labels: bug

#29 - cluster number estimation

Issue - State: closed - Opened by chintanparekh2301 about 7 years ago - 1 comment

#28 - Error in if (cores < 1) { : missing value where TRUE/FALSE needed

Issue - State: closed - Opened by bbimber over 7 years ago - 1 comment
Labels: bug

#27 - Estimation of the number of cluster

Issue - State: closed - Opened by charliex210 over 7 years ago - 1 comment
Labels: enhancement

#26 - Tutorial?

Issue - State: closed - Opened by royfrancis over 7 years ago - 1 comment

#25 - Error when running dyn.load("./R/projsplx_R.so")

Issue - State: closed - Opened by tom-snir over 7 years ago - 5 comments

#24 - Error in G1 + G2 - 2 * G : non-conformable arrays

Issue - State: closed - Opened by olhakholod over 7 years ago - 1 comment

#23 - Test_4_Usoskin.mat dataset has no gene names

Issue - State: closed - Opened by ahuizxc over 7 years ago - 1 comment
Labels: enhancement

#22 - Error in network.diffusion function: eigen(A, symmetric = TRUE) : infinite or missing values in 'x'

Issue - State: closed - Opened by steve2018 over 7 years ago - 6 comments
Labels: enhancement

#21 - About the dataset in data folder

Issue - State: closed - Opened by qianchenxi119 over 7 years ago - 1 comment

#20 - Description or guidelines for options

Issue - State: closed - Opened by verma014 over 7 years ago - 1 comment
Labels: enhancement

#19 - Error in sourceCpp

Issue - State: closed - Opened by qianchenxi119 over 7 years ago - 1 comment

#18 - ERROR: this R is version 3.3.1, package 'SIMLR' requires R >= 3.4

Issue - State: closed - Opened by ghost over 7 years ago - 2 comments

#17 - R crashing with large data when doing TSNE

Issue - State: closed - Opened by tjnitram over 7 years ago - 4 comments

#16 - Depends: R >= 3.3

Pull Request - State: closed - Opened by slowkow over 7 years ago - 1 comment

#15 - segfault memory not mapped

Issue - State: closed - Opened by slowkow over 7 years ago - 2 comments

#14 - List descriptions

Issue - State: closed - Opened by verma014 over 7 years ago

#13 - Large Scale SIMLR Similarity Matrix

Issue - State: closed - Opened by yanwu2014 over 7 years ago - 2 comments

#12 - C symbol name "projsplx_R" not in load table

Issue - State: closed - Opened by asmagen over 7 years ago - 9 comments

#11 - Error in dyn.load

Issue - State: closed - Opened by asmagen over 7 years ago - 3 comments

#10 - Loading count table for analysis in R

Issue - State: closed - Opened by arvindsundaram over 7 years ago - 2 comments

#9 - invalid ELF header in projsplx_R.so when trying to load with dyn.load

Issue - State: closed - Opened by yanwu2014 over 7 years ago - 2 comments

#8 - Windows test: extra characters in SIMLR.R, compilation as dll file

Issue - State: closed - Opened by SamGG over 7 years ago - 2 comments

#7 - Error when running SIMLR_LARGE in Matlab

Issue - State: closed - Opened by leshaker almost 8 years ago - 2 comments

#6 - Handle data from one other R package

Issue - State: closed - Opened by danro9685 about 8 years ago

#5 - Add files to turn into a valid R package

Pull Request - State: closed - Opened by oneillkza about 8 years ago

#4 - Example code calls a "compare" function not present in the package

Issue - State: closed - Opened by oneillkza about 8 years ago - 1 comment

#3 - Turn SIMLR into a working R package

Issue - State: closed - Opened by oneillkza about 8 years ago - 6 comments

#2 - Warning: stack imbalance in '.Call'

Issue - State: closed - Opened by danro9685 over 8 years ago

#1 - Development

Pull Request - State: closed - Opened by danro9685 over 8 years ago