Ecosyste.ms: Issues

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GitHub / BU-ISCIII/relecov-tools issues and pull requests

#176 - allow to continue uploading sample if the sample is already defined

Pull Request - State: closed - Opened by luissian over 2 years ago

#175 - Added broker_name to experiment.xml, run.xml and submission.xml

Pull Request - State: closed - Opened by ErikaKvalem over 2 years ago

#174 - Small changes in examples

Pull Request - State: closed - Opened by ErikaKvalem over 2 years ago

#173 - including schema_name and schema_version at feed_database for relecov

Pull Request - State: closed - Opened by luissian over 2 years ago

#172 - Added regex function for md5sum

Pull Request - State: closed - Opened by ErikaKvalem over 2 years ago

#171 - Include schema name and schema version in read_lab and bioinfo metadata

Pull Request - State: closed - Opened by luissian over 2 years ago

#170 - Changed names in bioinfo metadata lab

Pull Request - State: closed - Opened by ErikaKvalem over 2 years ago

#169 - Added templates folder and files

Pull Request - State: closed - Opened by ErikaKvalem over 2 years ago

#167 - Updated homogenizer, added user/passwd on sftp and fixed minor issues

Pull Request - State: closed - Opened by luissian over 2 years ago

#166 - Changes in relecov schema and ena schema

Pull Request - State: closed - Opened by ErikaKvalem over 2 years ago

#165 - Minor changes in array coordenates

Pull Request - State: closed - Opened by Alema91 over 2 years ago

#164 - Field name change

Pull Request - State: closed - Opened by ErikaKvalem over 2 years ago

#161 - Changes in format bioinfo

Pull Request - State: closed - Opened by Alema91 over 2 years ago

#160 - Adding options for sequencing instrument platform

Pull Request - State: closed - Opened by ErikaKvalem over 2 years ago

#159 - handling additional files for metadata_homogenizer module

Pull Request - State: closed - Opened by luissian over 2 years ago

#158 - Adding CHECKLIST to sample.xml

Pull Request - State: closed - Opened by ErikaKvalem over 2 years ago

#157 - Updated GISAID schema and changes in gisaid_upload

Pull Request - State: closed - Opened by mlarjim over 2 years ago

#156 - Changes for batch upload

Pull Request - State: closed - Opened by ErikaKvalem over 2 years ago

#155 - changes in read lab metadata for ENA ,and added new lab in config

Pull Request - State: closed - Opened by luissian over 2 years ago

#154 - Invalid metadata file contains all samples including valid ones

Issue - State: closed - Opened by luissian over 2 years ago
Labels: bug

#153 - implemented issue 152

Pull Request - State: closed - Opened by luissian over 2 years ago

#152 - Metadata mapping cannot field dummy info for run alias

Issue - State: closed - Opened by luissian over 2 years ago - 1 comment
Labels: bug

#151 - Update homogenizer module do not add additional fields

Issue - State: closed - Opened by luissian over 2 years ago - 1 comment
Labels: bug

#150 - Working on read_lab_metadata

Pull Request - State: closed - Opened by ErikaKvalem over 2 years ago

#149 - Added funcionality to correct R2 checksum

Pull Request - State: closed - Opened by ErikaKvalem over 2 years ago

#148 - Resolved: R1.fastq & R2.fastq had the same md5 checksum

Pull Request - State: closed - Opened by mlarjim over 2 years ago

#147 - Updated the homogenizer module and laboratories

Pull Request - State: closed - Opened by luissian over 2 years ago

#97 - upload to bioinfo analysis json to Relecov-plaform

Issue - State: closed - Opened by luissian over 2 years ago
Labels: enhancement

#96 - Upload 96 sample s to iSkyLIMS

Issue - State: closed - Opened by luissian over 2 years ago
Labels: enhancement

#93 - modify feed_database to be used for sending analysis/longtable info to relecov-platform

Issue - State: closed - Opened by luissian over 2 years ago
Labels: enhancement

#88 - Create first version of relecov-tool in oficial repo pypi.org

Issue - State: closed - Opened by luissian over 2 years ago - 1 comment

#80 - Descargar secuencias y metadata de GISAID 3800 secuencias

Issue - State: closed - Opened by ErikaKvalem almost 3 years ago - 1 comment

#69 - Upload 96 samples

Issue - State: closed - Opened by ErikaKvalem almost 3 years ago - 11 comments

#68 - Add to ena_upload.py how we introduce column names for dataframe creation

Issue - State: closed - Opened by ErikaKvalem almost 3 years ago
Labels: enhancement

#50 - Launch module

Issue - State: closed - Opened by saramonzon almost 3 years ago

#48 - Read metadata for bioinfo data

Issue - State: closed - Opened by saramonzon almost 3 years ago - 9 comments

#46 - Script to upload to gisaid

Issue - State: closed - Opened by saramonzon almost 3 years ago