Ecosyste.ms: Issues

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GitHub / BIC-MNI/minc-toolkit-v2 issues and pull requests

#166 - phantom_distortion_measure_v2 DIED

Issue - State: open - Opened by emilljungberg 8 months ago - 1 comment

#165 - add note for install on arm mac

Pull Request - State: closed - Opened by joshunrau 11 months ago - 7 comments

#164 - mnc2nii orientation incorrect?

Issue - State: closed - Opened by andrewsilberfeld about 1 year ago - 13 comments

#163 - minc_modify_header can't modify variable values

Issue - State: open - Opened by moreje about 1 year ago - 3 comments

#162 - ZLIB and GSL in release 1.9.18 and main

Issue - State: closed - Opened by psteadman over 1 year ago - 4 comments

#161 - Configuration failed at Cmake .. / step

Issue - State: closed - Opened by reneemapa over 1 year ago - 1 comment

#159 - Error Loading and Opening minc2 file

Issue - State: closed - Opened by motazalqaoud over 1 year ago - 5 comments

#158 - Cmake Errors

Issue - State: closed - Opened by motazalqaoud almost 2 years ago - 3 comments

#157 - Test/Validate OpenGL Vendor Neutral Dispatch Library (GLVND)

Issue - State: open - Opened by gdevenyi about 2 years ago - 2 comments

#156 - Time to drop LD_LIBRARY_PATH?

Issue - State: open - Opened by gdevenyi about 2 years ago - 3 comments

#155 - Make config ANTSPATH dependent on BUILD_ANTS

Issue - State: open - Opened by gdevenyi about 2 years ago

#154 - Fixes for 22.04 build

Pull Request - State: closed - Opened by gdevenyi about 2 years ago - 14 comments

#153 - patch_morphology build failure with external BLAS

Issue - State: open - Opened by bcdarwin about 2 years ago - 5 comments

#152 - develop-1.9.19 HEAD refers to an Elastix commit that doesn't exist

Issue - State: closed - Opened by gdevenyi about 2 years ago - 2 comments

#151 - Proposal: Move to develop+master branch + tags for future releases

Issue - State: open - Opened by gdevenyi about 2 years ago - 10 comments

#150 - OS X source compilation instructions

Issue - State: open - Opened by bcdarwin about 2 years ago - 2 comments

#149 - add GitHub Actions to build on various targets

Issue - State: open - Opened by bcdarwin about 2 years ago - 2 comments

#148 - build fails if spaces present in build directory

Issue - State: open - Opened by bcdarwin about 2 years ago

#147 - LIbminc compilation error introduced on develop-1.9.18

Issue - State: closed - Opened by bcdarwin about 2 years ago - 1 comment

#146 - fix zlib download url and hash due to deprecation

Pull Request - State: closed - Opened by bcdarwin about 2 years ago

#145 - cmake Error

Issue - State: open - Opened by fire9291 over 2 years ago - 2 comments

#144 - Fix MANPATH so that system man pages still work.

Pull Request - State: closed - Opened by gdevenyi over 2 years ago

#142 - Elastix commit not available when cloning branch develop-1.9.19

Issue - State: closed - Opened by antoimau over 2 years ago - 4 comments

#141 - Convert mnc to nift for fmriprep

Issue - State: closed - Opened by zhengchencai almost 3 years ago - 3 comments

#140 - Configure failed on AWS EC2

Issue - State: closed - Opened by XinQi7788 almost 3 years ago - 3 comments

#139 - Update GSL mirror path

Pull Request - State: closed - Opened by 0luhancheng0 almost 3 years ago - 1 comment

#138 - voliso error Illegal division by zero NumericUtilities.pm

Issue - State: closed - Opened by SaibotMagd almost 3 years ago - 7 comments

#137 - cmake fails on master branch

Issue - State: closed - Opened by SaibotMagd almost 3 years ago - 3 comments

#135 - cmake-modules/BuildGSL.cmake: unbreak GSL download

Pull Request - State: closed - Opened by bcdarwin about 3 years ago - 1 comment

#134 - FreeGLUT 3.2.1 changes break linking of Display/register

Issue - State: open - Opened by gdevenyi over 3 years ago - 9 comments

#133 - bic-mni-models missing pre-generated files for mritotal

Issue - State: open - Opened by SamPare over 3 years ago - 8 comments

#132 - Missing header files ?

Issue - State: closed - Opened by mboisson over 3 years ago - 38 comments

#131 - Building without downloading anything

Issue - State: closed - Opened by mboisson over 3 years ago - 15 comments

#130 - real voxel range in mincbbox

Issue - State: open - Opened by vfonov over 3 years ago

#129 - Container QoL

Issue - State: open - Opened by jordandekraker over 3 years ago - 2 comments

#128 - Using matlab and minc-toolkit in Ubuntu

Issue - State: closed - Opened by tharanic over 3 years ago - 4 comments

#127 - Cannot open files on Display

Issue - State: closed - Opened by SamPare over 3 years ago - 3 comments

#126 - 1.9.18 ABC_MINC fails on clang-12

Issue - State: closed - Opened by gdevenyi almost 4 years ago - 4 comments

#125 - Update minctools and oobicpl

Pull Request - State: closed - Opened by gdevenyi almost 4 years ago - 1 comment

#124 - Fix version and release date

Pull Request - State: closed - Opened by gdevenyi almost 4 years ago - 1 comment

#123 - Update to ITK 4.13.3

Pull Request - State: closed - Opened by gdevenyi almost 4 years ago

#122 - build fails for realease 1.9.17 but succeed on master

Issue - State: closed - Opened by vincentkersten almost 4 years ago - 1 comment

#121 - Update NetCDF version

Pull Request - State: closed - Opened by gdevenyi almost 4 years ago

#120 - audit tools for proper handling of direction cosines

Issue - State: open - Opened by gdevenyi almost 4 years ago

#119 - Update FFTW Cmake Config

Pull Request - State: closed - Opened by gdevenyi almost 4 years ago

#118 - minctracc failed -11

Issue - State: closed - Opened by charleygros about 4 years ago - 33 comments

#117 - Update conglomerate subproject

Pull Request - State: closed - Opened by gdevenyi about 4 years ago

#116 - fast_blur illegal instruction (core dumped)

Issue - State: closed - Opened by cmadjar about 4 years ago - 32 comments

#115 - register tools segmentation fault all the time

Issue - State: closed - Opened by w19787 about 4 years ago - 21 comments

#113 - Update conglomerate to fix smooth_mask datapath

Pull Request - State: closed - Opened by gdevenyi about 4 years ago - 1 comment

#112 - Patch itkv4

Pull Request - State: closed - Opened by gdevenyi about 4 years ago - 1 comment

#111 - Hdf5 update

Pull Request - State: closed - Opened by gdevenyi about 4 years ago - 1 comment

#110 - Openblas update

Pull Request - State: closed - Opened by gdevenyi about 4 years ago - 1 comment

#109 - Remove all MT_BUILD_QUIET support

Pull Request - State: closed - Opened by gdevenyi about 4 years ago

#108 - Add share path within minc-toolkit install to MNI_DATAPATH, for ILT

Pull Request - State: closed - Opened by gdevenyi about 4 years ago

#107 - Update bic-pipelines to version which uses MNI Datapath

Pull Request - State: closed - Opened by gdevenyi about 4 years ago - 1 comment

#104 - 1.9.18 release todo

Issue - State: closed - Opened by gdevenyi about 4 years ago - 7 comments

#103 - beast testing file is using old path which doesn't exist

Issue - State: closed - Opened by sebastian-burlacu about 4 years ago - 1 comment

#101 - Bad variable name for sh /opt/minc/1.9.17/minc-toolkit-config.sh

Issue - State: closed - Opened by ekuama over 4 years ago - 6 comments

#100 - CMake error

Issue - State: closed - Opened by ekuama over 4 years ago - 2 comments

#99 - Update README.md

Pull Request - State: closed - Opened by gdevenyi over 4 years ago

#98 - Installation from github - Permission denied (publickey)

Issue - State: closed - Opened by ekuama over 4 years ago - 1 comment

#97 - error: #error "Dunno about this gcc" while installing ITKv4

Issue - State: closed - Opened by pmgautam over 4 years ago - 17 comments

#96 - MincLaplace ***Error in 'usr/bin/python': double free or corruption (!prev)

Issue - State: closed - Opened by JA-Jones over 4 years ago - 1 comment

#95 - Corrupted conversion to mnic/nifti file format

Issue - State: open - Opened by sotirisnik over 4 years ago - 4 comments

#94 - Can minc-toolkit and minc-toolkit-v2 be installed on the same build?

Issue - State: closed - Opened by dorkylever over 4 years ago - 2 comments

#93 - $ANTSPATH is unset during build

Issue - State: closed - Opened by dorkylever over 4 years ago - 1 comment

#92 - Issue with xdisp

Issue - State: open - Opened by evaalonsoortiz almost 5 years ago

#91 - cmake fails with undefined reference to `fftwf_set_planner_hooks'

Issue - State: closed - Opened by ghost almost 5 years ago - 11 comments

#90 - Updated install instructions

Pull Request - State: closed - Opened by dorkylever almost 5 years ago - 3 comments

#88 - mnc2nii can't find input file

Issue - State: closed - Opened by christiantinauer almost 5 years ago - 13 comments

#87 - RPM CPACK config doesn't list dependencies

Issue - State: open - Opened by gdevenyi almost 5 years ago

#86 - cpack config overriding automatic package naming, breaking 32/64bit

Issue - State: closed - Opened by gdevenyi about 5 years ago - 4 comments

#85 - make[1]: *** [CMakeFiles/patch_morphology.dir/all] Error 2

Issue - State: closed - Opened by ekuama about 5 years ago - 2 comments

#84 - Investigate Macstadium for Open Source OSX Build Service

Issue - State: open - Opened by gdevenyi about 5 years ago

#83 - Add ILT share directory to MNI_DATAPATH

Issue - State: closed - Opened by gdevenyi over 5 years ago

#82 - Fix line endings in CMakeLists

Pull Request - State: closed - Opened by gdevenyi over 5 years ago

#81 - Make ILT depend on graphics setting

Pull Request - State: closed - Opened by gdevenyi over 5 years ago - 3 comments

#80 - develop-1.9.18 branch has minc-toolkit version 1.9.19

Issue - State: closed - Opened by gdevenyi over 5 years ago - 1 comment

#79 - upgrade to HDF5 1.10.XX

Issue - State: open - Opened by vfonov over 5 years ago - 1 comment

#78 - Enable PIC everywhere

Pull Request - State: closed - Opened by gdevenyi over 5 years ago - 1 comment

#77 - Remove patch now that submodule is updated

Pull Request - State: closed - Opened by gdevenyi over 5 years ago

#76 - Patch an ANTS build failure with modern compilers

Pull Request - State: closed - Opened by gdevenyi over 5 years ago - 1 comment

#75 - Fix OpenBLAS build on 32bit

Pull Request - State: closed - Opened by gdevenyi over 5 years ago - 2 comments

#74 - Update vfonov/ANTs for develop-1.9.18

Issue - State: closed - Opened by gdevenyi over 5 years ago - 3 comments

#72 - Bare ccmake on minc-toolkit-v2 develop-1.9.17 errors on OpenBlas

Issue - State: closed - Opened by gdevenyi over 5 years ago - 8 comments

#70 - 1.9.17 release complete?

Issue - State: closed - Opened by gdevenyi over 5 years ago - 11 comments

#65 - Can't open .obj files in meshlab

Issue - State: closed - Opened by danhps almost 6 years ago - 24 comments

#64 - Toolkit Can't seem to find ImageMath on a Mac

Issue - State: closed - Opened by danhps almost 6 years ago - 15 comments

#55 - file group ownership issue when building (umask issue?)

Issue - State: closed - Opened by bcdarwin over 6 years ago - 4 comments

#54 - MD5 hash does not match expected value

Issue - State: closed - Opened by viviansmiles over 6 years ago - 3 comments

#46 - Version of HDF5 out of date?

Issue - State: closed - Opened by tfunck about 7 years ago - 4 comments