BGI-flexlab/SOAPgaea issues and pull requests

#100 - build(deps): bump hadoop-common from 3.0.0-cdh6.2.0 to 3.2.3

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#99 - build(deps-dev): bump junit from 4.12 to 4.13.1

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#98 - 更新至cdh6.2版本后，相关类的调整

Issue - State: open - Opened by huangzhibo over 5 years ago

#97 - Huangzhibo

Pull Request - State: closed - Opened by huangzhibo over 5 years ago - 1 comment

#96 - Huangzhibo

Pull Request - State: closed - Opened by huangzhibo over 6 years ago - 2 comments

#95 - Huangzhibo

Pull Request - State: closed - Opened by huangzhibo over 6 years ago - 1 comment

#94 - Huangzhibo

Pull Request - State: closed - Opened by huangzhibo over 6 years ago - 1 comment

#93 - Huangzhibo

Pull Request - State: closed - Opened by huangzhibo over 6 years ago - 1 comment

#92 - update gitignore

Pull Request - State: closed - Opened by huangzhibo almost 7 years ago - 1 comment

#91 - Huangzhibo

Pull Request - State: closed - Opened by huangzhibo almost 7 years ago - 1 comment

#90 - Luhuifang

Pull Request - State: closed - Opened by luhuifang almost 7 years ago - 1 comment

#89 - Luhuifang

Pull Request - State: closed - Opened by luhuifang almost 7 years ago

#88 - Luhuifang

Pull Request - State: closed - Opened by luhuifang almost 7 years ago

#87 - Huangzhibo

Pull Request - State: closed - Opened by huangzhibo almost 7 years ago - 2 comments

#86 - Luhuifang

Pull Request - State: closed - Opened by luhuifang about 7 years ago - 1 comment

#85 - Huangzhibo

Pull Request - State: closed - Opened by huangzhibo about 7 years ago - 3 comments

#84 - Lishengkang

Pull Request - State: closed - Opened by lishengkang over 7 years ago - 1 comment

#83 - multiple sample annotations

Pull Request - State: closed - Opened by hkwkevin28 over 7 years ago - 4 comments

#82 - remove unuseful code

Pull Request - State: closed - Opened by huangzhibo over 7 years ago - 2 comments

#81 - Huangzhibo

Pull Request - State: closed - Opened by huangzhibo over 7 years ago - 1 comment

#80 - Huangzhibo

Pull Request - State: closed - Opened by huangzhibo over 7 years ago - 1 comment

#79 - fix SAM inputformat

Pull Request - State: closed - Opened by huangzhibo over 7 years ago

#78 - Huangzhibo

Pull Request - State: closed - Opened by huangzhibo over 7 years ago - 1 comment

#77 - Huangzhibo

Pull Request - State: closed - Opened by huangzhibo almost 8 years ago - 1 comment

#76 - hot fix window size

Pull Request - State: closed - Opened by zym1905 almost 8 years ago

#75 - pairHMM优化

Issue - State: closed - Opened by zym1905 almost 8 years ago - 2 comments
Labels: enhancement

#74 - genotyper debug final

Pull Request - State: closed - Opened by zym1905 almost 8 years ago

#73 - Huangzhibo

Pull Request - State: closed - Opened by huangzhibo almost 8 years ago - 3 comments

#72 - 去掉关于Cigar部分重复的代码

Issue - State: open - Opened by zym1905 almost 8 years ago

#71 - Huangzhibo

Pull Request - State: closed - Opened by huangzhibo almost 8 years ago - 2 comments

#70 - genotyer debug

Pull Request - State: closed - Opened by zym1905 almost 8 years ago

#69 - 如果染色体名称包含大写，在ReferenceShare中的getChromosomeInfo方法会报错

Issue - State: open - Opened by weipenegHU almost 8 years ago
Labels: bug

#68 - MarkDuplicate restruction

Pull Request - State: closed - Opened by huangzhibo almost 8 years ago - 1 comment

#67 - genotyper debug and import optimization

Pull Request - State: closed - Opened by zym1905 almost 8 years ago

#66 - add license

Pull Request - State: closed - Opened by weipenegHU almost 8 years ago - 1 comment

#65 - Lishengkang

Pull Request - State: closed - Opened by lishengkang almost 8 years ago - 1 comment

#64 - Lishengkang

Pull Request - State: closed - Opened by lishengkang almost 8 years ago

#63 - Lishengkang

Pull Request - State: closed - Opened by lishengkang almost 8 years ago

#62 - genotyer debug

Pull Request - State: closed - Opened by zym1905 almost 8 years ago

#61 - Huweipeng

Pull Request - State: closed - Opened by weipenegHU almost 8 years ago

#60 - Huweipeng

Pull Request - State: closed - Opened by weipenegHU almost 8 years ago - 2 comments

#59 - debug of genotyper

Pull Request - State: closed - Opened by zym1905 almost 8 years ago - 1 comment

#58 - realigner debug

Pull Request - State: closed - Opened by lishengkang almost 8 years ago - 1 comment

#57 - realigner debug

Pull Request - State: closed - Opened by lishengkang almost 8 years ago - 1 comment

#56 - Lishengkang

Pull Request - State: closed - Opened by lishengkang almost 8 years ago - 1 comment

#55 - Lishengkang

Pull Request - State: closed - Opened by lishengkang almost 8 years ago - 1 comment

#54 - realigner & bqsr debug

Pull Request - State: closed - Opened by lishengkang almost 8 years ago - 1 comment

#53 - Lishengkang

Pull Request - State: closed - Opened by lishengkang almost 8 years ago - 1 comment

#52 - reference name problem for reference index and share class

Issue - State: open - Opened by zym1905 almost 8 years ago
Labels: bug

#51 - bug fix

Pull Request - State: closed - Opened by zym1905 almost 8 years ago - 1 comment

#50 - Lishengkang

Pull Request - State: closed - Opened by lishengkang almost 8 years ago - 1 comment

#49 - bug fix and extend window based mapper

Pull Request - State: closed - Opened by zym1905 almost 8 years ago

#48 - License probleam

Issue - State: closed - Opened by zym1905 almost 8 years ago - 1 comment

#47 - add runner

Pull Request - State: closed - Opened by zym1905 almost 8 years ago

#46 - Zhangyong

Pull Request - State: closed - Opened by zym1905 almost 8 years ago - 1 comment

#45 - bamqc debug

Pull Request - State: closed - Opened by weipenegHU almost 8 years ago - 2 comments

#44 - Zhangyong

Pull Request - State: closed - Opened by zym1905 almost 8 years ago

#43 - bamqc debug

Pull Request - State: closed - Opened by weipenegHU almost 8 years ago - 1 comment

#42 - bamqc debug

Pull Request - State: closed - Opened by weipenegHU almost 8 years ago - 1 comment

#41 - bamqc debug

Pull Request - State: closed - Opened by weipenegHU almost 8 years ago - 1 comment

#40 - bamqc debug

Pull Request - State: closed - Opened by weipenegHU almost 8 years ago - 1 comment

#39 - Zhangyong

Pull Request - State: closed - Opened by zym1905 almost 8 years ago

#38 - Zhangyong

Pull Request - State: closed - Opened by zym1905 almost 8 years ago - 1 comment

#37 - bamqc debug

Pull Request - State: closed - Opened by weipenegHU almost 8 years ago - 1 comment

#36 - bamqc debug

Pull Request - State: closed - Opened by weipenegHU almost 8 years ago

#35 - Lishengkang

Pull Request - State: closed - Opened by lishengkang almost 8 years ago - 1 comment

#34 - Lishengkang

Pull Request - State: closed - Opened by lishengkang almost 8 years ago

#33 - pull request test

Pull Request - State: closed - Opened by lishengkang almost 8 years ago

#32 - Huweipeng

Pull Request - State: closed - Opened by huangzhibo about 8 years ago

#31 - 去重: 解决同一位置dup过多时的GC错误

Issue - State: closed - Opened by huangzhibo about 8 years ago - 1 comment
Labels: bug, enhancement

#30 - Huweipeng

Pull Request - State: closed - Opened by huangzhibo about 8 years ago

#29 - Huweipeng

Pull Request - State: closed - Opened by huangzhibo about 8 years ago

#28 - Huweipeng

Pull Request - State: closed - Opened by huangzhibo about 8 years ago - 1 comment

#27 - Huweipeng

Pull Request - State: closed - Opened by huangzhibo about 8 years ago - 1 comment

#26 - Huweipeng

Pull Request - State: closed - Opened by huangzhibo about 8 years ago - 1 comment

#25 - Huweipeng

Pull Request - State: closed - Opened by huangzhibo about 8 years ago

#24 - Huweipeng

Pull Request - State: closed - Opened by huangzhibo about 8 years ago - 1 comment

#23 - Huweipeng

Pull Request - State: closed - Opened by huangzhibo about 8 years ago - 1 comment

#22 - dbsnp共享内存

Issue - State: closed - Opened by lishengkang about 8 years ago - 2 comments
Labels: enhancement

#21 - vcf index后续开发需求

Issue - State: closed - Opened by lishengkang about 8 years ago - 1 comment
Labels: enhancement

#20 - Huweipeng

Pull Request - State: closed - Opened by huangzhibo about 8 years ago

#19 - Huweipeng

Pull Request - State: closed - Opened by huangzhibo about 8 years ago

#18 - annotator input Multi-sample vcf merge

Issue - State: closed - Opened by zym1905 about 8 years ago - 1 comment
Labels: enhancement

#17 - Huweipeng

Pull Request - State: closed - Opened by huangzhibo over 8 years ago